data_AT4 # _chem_comp.id AT4 _chem_comp.name "5'-O-[(R)-HYDROXY(THIOPHOSPHONOOXY)PHOSPHORYL]ADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N5 O9 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ADENOSINE 5'-O-(2-THIODIPHOSPHATE)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-01-23 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 443.267 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AT4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AT4 "O5'" O5* O 0 1 N N N 36.995 -50.729 25.885 -2.013 2.885 2.340 "O5'" AT4 1 AT4 "C5'" C5* C 0 1 N N N 36.974 -52.028 26.483 -0.881 2.428 1.621 "C5'" AT4 2 AT4 "C4'" C4* C 0 1 N N R 35.616 -52.713 26.317 -0.199 1.333 2.429 "C4'" AT4 3 AT4 "O4'" O4* O 0 1 N N N 34.632 -51.898 26.983 -1.128 0.236 2.584 "O4'" AT4 4 AT4 "C3'" C3* C 0 1 N N S 35.205 -52.744 24.844 1.032 0.761 1.734 "C3'" AT4 5 AT4 "O3'" O3* O 0 1 N N N 34.219 -53.752 24.609 1.918 0.238 2.725 "O3'" AT4 6 AT4 "C2'" C2* C 0 1 N N R 34.563 -51.367 24.703 0.447 -0.380 0.926 "C2'" AT4 7 AT4 "C1'" C1* C 0 1 N N R 33.731 -51.388 25.984 -0.616 -0.910 1.877 "C1'" AT4 8 AT4 N1 N1 N 0 1 Y N N 29.538 -48.649 27.199 -2.532 -5.444 0.316 N1 AT4 9 AT4 C2 C2 C 0 1 Y N N 29.633 -49.933 26.899 -1.384 -5.125 0.960 C2 AT4 10 AT4 N3 N3 N 0 1 Y N N 30.790 -50.495 26.598 -0.937 -3.909 1.343 N3 AT4 11 AT4 C4 C4 C 0 1 Y N N 31.916 -49.770 26.590 -1.815 -2.957 0.996 C4 AT4 12 AT4 C5 C5 C 0 1 Y N N 31.857 -48.418 26.899 -3.023 -3.129 0.339 C5 AT4 13 AT4 C6 C6 C 0 1 Y N N 30.623 -47.863 27.208 -3.373 -4.431 -0.004 C6 AT4 14 AT4 N6 N6 N 0 1 N N N 30.517 -46.571 27.510 -4.580 -4.698 -0.672 N6 AT4 15 AT4 N7 N7 N 0 1 Y N N 33.096 -47.939 26.824 -3.651 -1.923 0.154 N7 AT4 16 AT4 C8 C8 C 0 1 Y N N 33.902 -48.942 26.485 -2.841 -1.034 0.689 C8 AT4 17 AT4 N9 N9 N 0 1 Y N N 33.191 -50.057 26.342 -1.713 -1.611 1.213 N9 AT4 18 AT4 "O2'" O2* O 0 1 N N N 33.691 -51.314 23.570 1.399 -1.370 0.596 "O2'" AT4 19 AT4 PA PA P 0 1 N N R 38.352 -49.863 25.906 -2.943 4.058 1.724 PA AT4 20 AT4 O2A O2A O 0 1 N N N 38.147 -48.703 24.808 -4.113 4.459 2.575 O2A AT4 21 AT4 O1A O1A O 0 1 N N N 38.675 -49.337 27.250 -1.916 5.264 1.393 O1A AT4 22 AT4 O3A O3A O 0 1 N N N 39.489 -50.839 25.315 -3.338 3.483 0.265 O3A AT4 23 AT4 PB PB P 0 1 N N R 40.911 -50.275 24.810 -4.142 4.155 -0.971 PB AT4 24 AT4 O1B O1B O 0 1 N N N 40.993 -48.842 25.170 -5.546 4.564 -0.613 O1B AT4 25 AT4 O2B O2B O 0 1 N N N 41.963 -51.186 25.315 -3.205 5.432 -1.324 O2B AT4 26 AT4 S3B S3B S 0 1 N N N 40.793 -50.448 22.887 -4.134 2.828 -2.594 S3B AT4 27 AT4 "H5'1" 1H5* H 0 0 N N N 37.743 -52.650 26.001 -1.204 2.036 0.655 "H5'1" AT4 28 AT4 "H5'2" 2H5* H 0 0 N N N 37.168 -51.911 27.559 -0.195 3.262 1.465 "H5'2" AT4 29 AT4 "H4'" H4* H 0 1 N N N 35.682 -53.734 26.720 0.033 1.713 3.429 "H4'" AT4 30 AT4 "H3'" H3* H 0 1 N N N 36.032 -52.958 24.150 1.592 1.484 1.136 "H3'" AT4 31 AT4 "HO3'" HO3* H 0 0 N N N 34.000 -53.772 23.685 1.488 0.385 3.581 "HO3'" AT4 32 AT4 "H2'" H2* H 0 1 N N N 35.262 -50.528 24.570 -0.005 0.000 0.002 "H2'" AT4 33 AT4 "H1'" H1* H 0 1 N N N 32.831 -52.011 25.875 -0.213 -1.625 2.603 "H1'" AT4 34 AT4 H2 H2 H 0 1 N N N 28.739 -50.540 26.900 -0.735 -5.961 1.201 H2 AT4 35 AT4 HN61 1HN6 H 0 0 N N N 30.490 -46.462 28.504 -5.208 -3.943 -0.874 HN61 AT4 36 AT4 HN62 2HN6 H 0 0 N N N 31.304 -46.077 27.141 -4.843 -5.648 -0.854 HN62 AT4 37 AT4 H8 H8 H 0 1 N N N 34.970 -48.863 26.347 -3.013 0.033 0.727 H8 AT4 38 AT4 "HO2'" HO2* H 0 0 N N N 32.788 -51.302 23.865 2.249 -0.917 0.452 "HO2'" AT4 39 AT4 HO1A HO1A H 0 0 N N N 38.744 -50.058 27.865 -2.277 6.128 1.102 HO1A AT4 40 AT4 HO2B HO2B H 0 0 N N N 42.576 -51.381 24.616 -3.549 6.114 -1.939 HO2B AT4 41 AT4 HS3B HS3B H 0 0 N N N 40.767 -49.266 22.346 -5.445 2.869 -2.876 HS3B AT4 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AT4 "O5'" PA SING N N 1 AT4 "O5'" "C5'" SING N N 2 AT4 "C5'" "C4'" SING N N 3 AT4 "C5'" "H5'1" SING N N 4 AT4 "C5'" "H5'2" SING N N 5 AT4 "C4'" "C3'" SING N N 6 AT4 "C4'" "O4'" SING N N 7 AT4 "C4'" "H4'" SING N N 8 AT4 "O4'" "C1'" SING N N 9 AT4 "C3'" "O3'" SING N N 10 AT4 "C3'" "C2'" SING N N 11 AT4 "C3'" "H3'" SING N N 12 AT4 "O3'" "HO3'" SING N N 13 AT4 "C2'" "O2'" SING N N 14 AT4 "C2'" "C1'" SING N N 15 AT4 "C2'" "H2'" SING N N 16 AT4 "C1'" N9 SING N N 17 AT4 "C1'" "H1'" SING N N 18 AT4 N1 C2 DOUB Y N 19 AT4 N1 C6 SING Y N 20 AT4 C2 N3 SING Y N 21 AT4 C2 H2 SING N N 22 AT4 N3 C4 DOUB Y N 23 AT4 C4 N9 SING Y N 24 AT4 C4 C5 SING Y N 25 AT4 C5 N7 SING Y N 26 AT4 C5 C6 DOUB Y N 27 AT4 C6 N6 SING N N 28 AT4 N6 HN61 SING N N 29 AT4 N6 HN62 SING N N 30 AT4 N7 C8 DOUB Y N 31 AT4 C8 N9 SING Y N 32 AT4 C8 H8 SING N N 33 AT4 "O2'" "HO2'" SING N N 34 AT4 PA O2A DOUB N N 35 AT4 PA O3A SING N N 36 AT4 PA O1A SING N N 37 AT4 O1A HO1A SING N N 38 AT4 O3A PB SING N N 39 AT4 PB S3B SING N N 40 AT4 PB O1B DOUB N N 41 AT4 PB O2B SING N N 42 AT4 O2B HO2B SING N N 43 AT4 S3B HS3B SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AT4 SMILES ACDLabs 10.04 "O=P(O)(S)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" AT4 SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(S)=O)[C@@H](O)[C@H]3O" AT4 SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(S)=O)[CH](O)[CH]3O" AT4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)S)O)O)N" AT4 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)S)O)O)N" AT4 InChI InChI 1.03 "InChI=1S/C10H15N5O9P2S/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(23-10)1-22-25(18,19)24-26(20,21)27/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H2,11,12,13)(H2,20,21,27)/t4-,6-,7-,10-/m1/s1" AT4 InChIKey InChI 1.03 HCIKUKNAJRJFOW-KQYNXXCUSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AT4 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(R)-hydroxy(thiophosphonooxy)phosphoryl]adenosine" AT4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-sulfanyl-phosphinic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AT4 "Create component" 2007-01-23 EBI AT4 "Modify descriptor" 2011-06-04 RCSB AT4 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AT4 _pdbx_chem_comp_synonyms.name "ADENOSINE 5'-O-(2-THIODIPHOSPHATE)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##