data_AT9 # _chem_comp.id AT9 _chem_comp.name "[[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H17 F N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms AT-9010 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-16 _chem_comp.pdbx_modified_date 2022-02-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.198 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AT9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ED5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AT9 "C1'" C1 C 0 1 N N R 131.308 131.776 129.694 -3.118 -0.363 0.677 "C1'" AT9 1 AT9 C2 C2 C 0 1 N N N 133.789 130.779 133.046 -7.061 1.679 1.258 C2 AT9 2 AT9 "C2'" C3 C 0 1 N N R 131.727 131.246 128.311 -3.536 -1.828 0.912 "C2'" AT9 3 AT9 C3 C4 C 0 1 N N N 131.754 129.728 128.208 -4.755 -2.181 0.057 C3 AT9 4 AT9 "C3'" C5 C 0 1 N N R 130.771 131.918 127.321 -2.304 -2.651 0.464 "C3'" AT9 5 AT9 C4 C6 C 0 1 Y N N 131.968 130.580 131.798 -5.243 0.872 0.084 C4 AT9 6 AT9 "C4'" C7 C 0 1 N N R 129.649 132.515 128.152 -1.166 -1.602 0.546 "C4'" AT9 7 AT9 C5 C8 C 0 1 Y N N 131.396 129.609 132.584 -5.789 1.346 -1.114 C5 AT9 8 AT9 "C5'" C9 C 0 1 N N N 128.316 131.812 128.070 -0.016 -1.980 -0.390 "C5'" AT9 9 AT9 C6 C10 C 0 1 N N N 132.083 129.158 133.735 -7.038 2.008 -1.074 C6 AT9 10 AT9 C8 C11 C 0 1 Y N N 130.023 129.960 130.986 -3.901 0.398 -1.599 C8 AT9 11 AT9 F4 F1 F 0 1 N N N 132.981 131.681 128.053 -3.809 -2.049 2.266 F4 AT9 12 AT9 N1 N1 N 0 1 N N N 133.297 129.818 133.890 -7.646 2.159 0.123 N1 AT9 13 AT9 N2 N2 N 0 1 N N N 134.978 131.295 133.368 -7.702 1.846 2.459 N2 AT9 14 AT9 N3 N3 N 0 1 N N N 133.153 131.210 131.960 -5.903 1.058 1.233 N3 AT9 15 AT9 N7 N4 N 0 1 Y N N 130.166 129.224 132.064 -4.922 1.025 -2.106 N7 AT9 16 AT9 N9 N5 N 0 1 Y N N 131.097 130.794 130.767 -4.055 0.279 -0.248 N9 AT9 17 AT9 O1A O1 O 0 1 N N N 126.340 129.922 128.445 2.155 -0.896 -2.597 O1A AT9 18 AT9 O1B O2 O 0 1 N N N 127.015 126.525 126.088 5.364 0.864 -2.071 O1B AT9 19 AT9 O1G O3 O 0 1 N N N 124.287 126.932 122.434 7.880 0.252 1.155 O1G AT9 20 AT9 O2A O4 O 0 1 N N N 128.292 128.317 128.080 3.027 -2.510 -0.864 O2A AT9 21 AT9 O2B O5 O 0 1 N N N 128.224 127.980 124.340 5.758 -1.134 -0.580 O2B AT9 22 AT9 O2G O6 O 0 1 N N N 125.951 125.388 123.479 7.758 2.572 0.170 O2G AT9 23 AT9 "O3'" O7 O 0 1 N N N 131.426 132.964 126.619 -2.061 -3.737 1.359 "O3'" AT9 24 AT9 O3A O8 O 0 1 N N N 126.830 129.030 126.144 3.478 -0.056 -0.487 O3A AT9 25 AT9 O3B O9 O 0 1 N N N 125.729 127.723 124.319 5.594 1.124 0.535 O3B AT9 26 AT9 O3G O10 O 0 1 N N N 123.911 126.088 124.759 6.906 2.073 2.606 O3G AT9 27 AT9 "O4'" O11 O 0 1 N N N 130.112 132.525 129.521 -1.799 -0.379 0.106 "O4'" AT9 28 AT9 "O5'" O12 O 0 1 N N N 128.394 130.668 127.188 1.066 -1.063 -0.210 "O5'" AT9 29 AT9 O6 O13 O 0 1 N N N 131.730 128.308 134.560 -7.550 2.438 -2.093 O6 AT9 30 AT9 PA P1 P 0 1 N N N 127.445 129.434 127.570 2.444 -1.161 -1.036 PA AT9 31 AT9 PB P2 P 0 1 N N N 127.048 127.738 125.224 5.064 0.171 -0.649 PB AT9 32 AT9 PG P3 P 0 1 N N N 124.924 126.465 123.711 7.052 1.478 1.117 PG AT9 33 AT9 H1 H1 H 0 1 N N N 132.100 132.464 130.024 -3.106 0.175 1.625 H1 AT9 34 AT9 H2 H2 H 0 1 N N N 132.460 129.322 128.947 -4.511 -2.047 -0.997 H2 AT9 35 AT9 H3 H3 H 0 1 N N N 130.748 129.329 128.405 -5.036 -3.219 0.235 H3 AT9 36 AT9 H4 H4 H 0 1 N N N 132.073 129.435 127.197 -5.587 -1.528 0.323 H4 AT9 37 AT9 H5 H5 H 0 1 N N N 130.364 131.166 126.629 -2.428 -3.011 -0.558 H5 AT9 38 AT9 H6 H6 H 0 1 N N N 129.503 133.554 127.822 -0.810 -1.500 1.571 H6 AT9 39 AT9 H7 H7 H 0 1 N N N 127.561 132.513 127.685 0.322 -2.990 -0.161 H7 AT9 40 AT9 H8 H8 H 0 1 N N N 128.024 131.474 129.075 -0.360 -1.938 -1.424 H8 AT9 41 AT9 H9 H9 H 0 1 N N N 129.158 129.916 130.341 -3.058 0.026 -2.163 H9 AT9 42 AT9 H10 H10 H 0 1 N N N 133.856 129.571 134.681 -8.503 2.609 0.176 H10 AT9 43 AT9 H11 H11 H 0 1 N N N 135.388 132.003 132.793 -8.559 2.299 2.493 H11 AT9 44 AT9 H12 H12 H 0 1 N N N 135.458 130.973 134.184 -7.299 1.511 3.275 H12 AT9 45 AT9 H13 H13 H 0 1 N N N 126.331 129.422 129.253 1.771 -0.028 -2.784 H13 AT9 46 AT9 H14 H14 H 0 1 N N N 127.809 126.020 125.956 4.939 1.725 -2.187 H14 AT9 47 AT9 H15 H15 H 0 1 N N N 126.008 125.199 122.550 7.269 3.404 0.098 H15 AT9 48 AT9 H16 H16 H 0 1 N N N 132.131 132.602 126.095 -1.249 -4.228 1.172 H16 AT9 49 AT9 H17 H17 H 0 1 N N N 123.035 126.217 124.414 7.747 2.309 3.020 H17 AT9 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AT9 O1G PG DOUB N N 1 AT9 O2G PG SING N N 2 AT9 PG O3B SING N N 3 AT9 PG O3G SING N N 4 AT9 O3B PB SING N N 5 AT9 O2B PB DOUB N N 6 AT9 PB O1B SING N N 7 AT9 PB O3A SING N N 8 AT9 O3A PA SING N N 9 AT9 "O3'" "C3'" SING N N 10 AT9 "O5'" PA SING N N 11 AT9 "O5'" "C5'" SING N N 12 AT9 "C3'" "C4'" SING N N 13 AT9 "C3'" "C2'" SING N N 14 AT9 PA O2A DOUB N N 15 AT9 PA O1A SING N N 16 AT9 F4 "C2'" SING N N 17 AT9 "C5'" "C4'" SING N N 18 AT9 "C4'" "O4'" SING N N 19 AT9 C3 "C2'" SING N N 20 AT9 "C2'" "C1'" SING N N 21 AT9 "O4'" "C1'" SING N N 22 AT9 "C1'" N9 SING N N 23 AT9 N9 C8 SING Y N 24 AT9 N9 C4 SING Y N 25 AT9 C8 N7 DOUB Y N 26 AT9 C4 N3 SING N N 27 AT9 C4 C5 DOUB Y N 28 AT9 N3 C2 DOUB N N 29 AT9 N7 C5 SING Y N 30 AT9 C5 C6 SING N N 31 AT9 C2 N2 SING N N 32 AT9 C2 N1 SING N N 33 AT9 C6 N1 SING N N 34 AT9 C6 O6 DOUB N N 35 AT9 "C1'" H1 SING N N 36 AT9 C3 H2 SING N N 37 AT9 C3 H3 SING N N 38 AT9 C3 H4 SING N N 39 AT9 "C3'" H5 SING N N 40 AT9 "C4'" H6 SING N N 41 AT9 "C5'" H7 SING N N 42 AT9 "C5'" H8 SING N N 43 AT9 C8 H9 SING N N 44 AT9 N1 H10 SING N N 45 AT9 N2 H11 SING N N 46 AT9 N2 H12 SING N N 47 AT9 O1A H13 SING N N 48 AT9 O1B H14 SING N N 49 AT9 O2G H15 SING N N 50 AT9 "O3'" H16 SING N N 51 AT9 O3G H17 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AT9 InChI InChI 1.03 "InChI=1S/C11H17FN5O13P3/c1-11(12)6(18)4(2-27-32(23,24)30-33(25,26)29-31(20,21)22)28-9(11)17-3-14-5-7(17)15-10(13)16-8(5)19/h3-4,6,9,18H,2H2,1H3,(H,23,24)(H,25,26)(H2,20,21,22)(H3,13,15,16,19)/t4-,6-,9-,11-/m1/s1" AT9 InChIKey InChI 1.03 GFEXCNGIPRYQFE-GITKWUPZSA-N AT9 SMILES_CANONICAL CACTVS 3.385 "C[C@@]1(F)[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[C@H]1n2cnc3C(=O)NC(=Nc23)N" AT9 SMILES CACTVS 3.385 "C[C]1(F)[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]1n2cnc3C(=O)NC(=Nc23)N" AT9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1([C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)F" AT9 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(C(OC1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)F" # _pdbx_chem_comp_identifier.comp_id AT9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AT9 _pdbx_chem_comp_synonyms.name AT-9010 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AT9 "Create component" 2021-03-16 PDBJ AT9 "Initial release" 2022-02-16 RCSB ##