data_ATF
#
_chem_comp.id ATF
_chem_comp.name "PHOSPHODIFLUOROMETHYLPHOSPHONIC ACID-ADENYLATE ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H16 F2 N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 541.189
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ATF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DVR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ATF PG PG P 0 1 N N N 23.657 33.684 14.857 0.998 0.087 -6.846 PG ATF 1
ATF O1G O1G O 0 1 N N N 23.600 33.294 13.438 1.468 1.482 -6.686 O1G ATF 2
ATF O2G O2G O 0 1 N N N 24.646 34.781 15.177 1.953 -0.683 -7.888 O2G ATF 3
ATF O3G O3G O 0 1 N N N 22.222 34.328 15.212 -0.511 0.090 -7.403 O3G ATF 4
ATF PB PB P 0 1 N N R 23.392 31.842 17.406 -0.031 0.113 -4.053 PB ATF 5
ATF O1B O1B O 0 1 N N N 24.126 32.861 18.167 0.438 1.507 -3.893 O1B ATF 6
ATF O2B O2B O 0 1 N N N 21.953 31.702 17.846 -1.541 0.116 -4.610 O2B ATF 7
ATF C3B C3B C 0 1 N N N 23.512 32.127 15.673 1.049 -0.759 -5.233 C3B ATF 8
ATF F1B F1B F 0 1 N N N 24.290 31.285 14.941 2.362 -0.762 -4.749 F1B ATF 9
ATF F2B F2B F 0 1 N N N 22.536 31.292 15.219 0.606 -2.078 -5.385 F2B ATF 10
ATF PA PA P 0 1 N N R 25.504 29.801 18.254 -0.957 0.184 -1.641 PA ATF 11
ATF O1A O1A O 0 1 N N N 26.736 30.348 17.755 -2.332 0.186 -2.190 O1A ATF 12
ATF O2A O2A O 0 1 N N N 25.500 28.303 18.242 -0.431 1.700 -1.507 O2A ATF 13
ATF O3A O3A O 0 1 N N N 24.038 30.359 17.748 0.013 -0.635 -2.629 O3A ATF 14
ATF "O5'" O5* O 0 1 N N N 25.577 30.398 19.740 -0.960 -0.512 -0.190 "O5'" ATF 15
ATF "C5'" C5* C 0 1 N N N 26.093 31.682 20.084 -1.836 0.257 0.636 "C5'" ATF 16
ATF "C4'" C4* C 0 1 N N R 27.221 31.548 21.113 -1.884 -0.355 2.037 "C4'" ATF 17
ATF "O4'" O4* O 0 1 N N N 26.861 31.160 22.486 -0.572 -0.332 2.641 "O4'" ATF 18
ATF "C3'" C3* C 0 1 N N S 28.318 30.519 20.741 -2.764 0.504 2.972 "C3'" ATF 19
ATF "O3'" O3* O 0 1 N N N 29.528 30.977 21.288 -4.077 -0.051 3.074 "O3'" ATF 20
ATF "C2'" C2* C 0 1 N N R 27.875 29.224 21.404 -2.039 0.437 4.336 "C2'" ATF 21
ATF "O2'" O2* O 0 1 N N N 29.025 28.463 21.781 -2.883 -0.157 5.324 "O2'" ATF 22
ATF "C1'" C1* C 0 1 N N R 27.003 29.764 22.562 -0.806 -0.450 4.061 "C1'" ATF 23
ATF N9 N9 N 0 1 Y N N 26.112 28.926 23.376 0.353 0.039 4.811 N9 ATF 24
ATF C8 C8 C 0 1 Y N N 25.238 28.031 22.817 1.250 0.975 4.388 C8 ATF 25
ATF N7 N7 N 0 1 Y N N 24.458 27.460 23.635 2.152 1.172 5.305 N7 ATF 26
ATF C5 C5 C 0 1 Y N N 24.791 28.003 24.869 1.890 0.381 6.373 C5 ATF 27
ATF C6 C6 C 0 1 Y N N 24.265 27.833 26.175 2.506 0.164 7.617 C6 ATF 28
ATF N6 N6 N 0 1 N N N 23.156 27.110 26.411 3.649 0.859 7.972 N6 ATF 29
ATF N1 N1 N 0 1 Y N N 24.882 28.504 27.137 1.964 -0.721 8.447 N1 ATF 30
ATF C2 C2 C 0 1 Y N N 25.914 29.306 26.843 0.874 -1.389 8.116 C2 ATF 31
ATF N3 N3 N 0 1 Y N N 26.499 29.600 25.691 0.266 -1.222 6.961 N3 ATF 32
ATF C4 C4 C 0 1 Y N N 25.887 28.912 24.703 0.735 -0.358 6.067 C4 ATF 33
ATF HOG2 2HOG H 0 0 N N N 24.682 35.032 16.092 1.897 -0.204 -8.726 HOG2 ATF 34
ATF HOG3 3HOG H 0 0 N N N 22.258 34.579 16.127 -0.778 -0.834 -7.493 HOG3 ATF 35
ATF HOB2 2HOB H 0 0 N N N 21.478 31.042 17.353 -1.808 -0.809 -4.700 HOB2 ATF 36
ATF HOA2 2HOA H 0 0 N N N 24.685 27.941 18.571 0.464 1.654 -1.147 HOA2 ATF 37
ATF "H5'1" 1H5* H 0 0 N N N 26.418 32.253 19.183 -2.837 0.256 0.204 "H5'1" ATF 38
ATF "H5'2" 2H5* H 0 0 N N N 25.290 32.371 20.435 -1.468 1.281 0.699 "H5'2" ATF 39
ATF "H4'" H4* H 0 1 N N N 27.564 32.608 21.085 -2.263 -1.376 1.991 "H4'" ATF 40
ATF "H3'" H3* H 0 1 N N N 28.459 30.376 19.644 -2.812 1.532 2.613 "H3'" ATF 41
ATF "HO3'" *HO3 H 0 0 N N N 30.200 30.346 21.059 -4.578 0.524 3.667 "HO3'" ATF 42
ATF "H2'" H2* H 0 1 N N N 27.299 28.500 20.780 -1.728 1.433 4.652 "H2'" ATF 43
ATF "HO2'" *HO2 H 0 0 N N N 28.748 27.654 22.195 -3.661 0.410 5.406 "HO2'" ATF 44
ATF "H1'" H1* H 0 1 N N N 27.543 29.485 23.496 -1.017 -1.486 4.326 "H1'" ATF 45
ATF H8 H8 H 0 1 N N N 25.164 27.778 21.745 1.216 1.478 3.433 H8 ATF 46
ATF HN61 1HN6 H 0 0 N N N 22.777 26.987 27.350 4.063 0.703 8.835 HN61 ATF 47
ATF HN62 2HN6 H 0 0 N N N 23.299 26.182 26.011 4.038 1.500 7.356 HN62 ATF 48
ATF H2 H2 H 0 1 N N N 26.365 29.818 27.709 0.466 -2.099 8.821 H2 ATF 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ATF PG O1G DOUB N N 1
ATF PG O2G SING N N 2
ATF PG O3G SING N N 3
ATF PG C3B SING N N 4
ATF O2G HOG2 SING N N 5
ATF O3G HOG3 SING N N 6
ATF PB O1B DOUB N N 7
ATF PB O2B SING N N 8
ATF PB C3B SING N N 9
ATF PB O3A SING N N 10
ATF O2B HOB2 SING N N 11
ATF C3B F1B SING N N 12
ATF C3B F2B SING N N 13
ATF PA O1A DOUB N N 14
ATF PA O2A SING N N 15
ATF PA O3A SING N N 16
ATF PA "O5'" SING N N 17
ATF O2A HOA2 SING N N 18
ATF "O5'" "C5'" SING N N 19
ATF "C5'" "C4'" SING N N 20
ATF "C5'" "H5'1" SING N N 21
ATF "C5'" "H5'2" SING N N 22
ATF "C4'" "O4'" SING N N 23
ATF "C4'" "C3'" SING N N 24
ATF "C4'" "H4'" SING N N 25
ATF "O4'" "C1'" SING N N 26
ATF "C3'" "O3'" SING N N 27
ATF "C3'" "C2'" SING N N 28
ATF "C3'" "H3'" SING N N 29
ATF "O3'" "HO3'" SING N N 30
ATF "C2'" "O2'" SING N N 31
ATF "C2'" "C1'" SING N N 32
ATF "C2'" "H2'" SING N N 33
ATF "O2'" "HO2'" SING N N 34
ATF "C1'" N9 SING N N 35
ATF "C1'" "H1'" SING N N 36
ATF N9 C8 SING Y N 37
ATF N9 C4 SING Y N 38
ATF C8 N7 DOUB Y N 39
ATF C8 H8 SING N N 40
ATF N7 C5 SING Y N 41
ATF C5 C6 SING Y N 42
ATF C5 C4 DOUB Y N 43
ATF C6 N6 SING N N 44
ATF C6 N1 DOUB Y N 45
ATF N6 HN61 SING N N 46
ATF N6 HN62 SING N N 47
ATF N1 C2 SING Y N 48
ATF C2 N3 DOUB Y N 49
ATF C2 H2 SING N N 50
ATF N3 C4 SING Y N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ATF SMILES ACDLabs 10.04 "FC(F)(P(=O)(O)O)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"
ATF SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)C(F)(F)[P](O)(O)=O)[C@@H](O)[C@H]3O"
ATF SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C(F)(F)[P](O)(O)=O)[CH](O)[CH]3O"
ATF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(C(F)(F)P(=O)(O)O)O)O)O)N"
ATF SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(C(F)(F)P(=O)(O)O)O)O)O)N"
ATF InChI InChI 1.03
"InChI=1S/C11H16F2N5O12P3/c12-11(13,31(21,22)23)32(24,25)30-33(26,27)28-1-4-6(19)7(20)10(29-4)18-3-17-5-8(14)15-2-16-9(5)18/h2-4,6-7,10,19-20H,1H2,(H,24,25)(H,26,27)(H2,14,15,16)(H2,21,22,23)/t4-,6-,7-,10-/m1/s1"
ATF InChIKey InChI 1.03 ODWAWOIUPXBZKQ-KQYNXXCUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ATF "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(R)-{[(R)-[difluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine"
ATF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-difluoro-methyl]phosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ATF "Create component" 1999-07-08 RCSB
ATF "Modify descriptor" 2011-06-04 RCSB
#