data_ATR # _chem_comp.id ATR _chem_comp.name "2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.181 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ATR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AFL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ATR PB PB P 0 1 N N N 9.209 7.097 2.633 0.821 -0.010 -6.586 PB ATR 1 ATR O1B O1B O 0 1 N N N 8.783 7.302 4.022 1.170 1.416 -6.406 O1B ATR 2 ATR O2B O2B O 0 1 N N N 10.027 5.875 2.468 1.852 -0.690 -7.619 O2B ATR 3 ATR O3B O3B O 0 1 N N N 8.084 7.266 1.680 -0.675 -0.127 -7.167 O3B ATR 4 ATR PA PA P 0 1 N N R 10.591 9.841 2.298 -0.145 -0.039 -4.188 PA ATR 5 ATR O1A O1A O 0 1 N N N 12.076 10.063 2.321 -1.506 -0.146 -4.760 O1A ATR 6 ATR O2A O2A O 0 1 N N N 9.764 10.523 3.361 0.251 1.513 -4.033 O2A ATR 7 ATR O3A O3A O 0 1 N N N 10.265 8.188 2.075 0.906 -0.766 -5.167 O3A ATR 8 ATR "O5'" O5* O 0 1 N N N 10.047 10.373 0.789 -0.112 -0.748 -2.743 "O5'" ATR 9 ATR "C5'" C5* C 0 1 N N N 10.741 9.732 -0.232 -1.061 -0.062 -1.925 "C5'" ATR 10 ATR "C4'" C4* C 0 1 N N R 11.808 10.475 -0.781 -1.080 -0.690 -0.530 "C4'" ATR 11 ATR "O4'" O4* O 0 1 N N N 12.092 9.601 -1.852 0.215 -0.564 0.095 "O4'" ATR 12 ATR "C3'" C3* C 0 1 N N R 11.437 11.823 -1.499 -2.042 0.084 0.397 "C3'" ATR 13 ATR "O3'" O3* O 0 1 N N N 11.368 13.033 -0.650 -3.306 -0.578 0.474 "O3'" ATR 14 ATR "C2'" C2* C 0 1 N N R 12.582 11.954 -2.560 -1.335 0.065 1.773 "C2'" ATR 15 ATR "O2'" O2* O 0 1 N N N 13.981 12.121 -2.135 -2.142 -0.608 2.741 "O2'" ATR 16 ATR "P2'" P2* P 0 1 N N N 15.194 12.393 -3.346 -2.419 0.443 3.928 "P2'" ATR 17 ATR O1P O1P O 0 1 N N N 15.792 11.054 -3.772 -3.126 1.625 3.386 O1P ATR 18 ATR O2P O2P O 0 1 N N N 14.400 13.137 -4.438 -3.328 -0.252 5.061 O2P ATR 19 ATR O3P O3P O 0 1 N N N 16.076 13.234 -2.440 -1.018 0.905 4.573 O3P ATR 20 ATR "C1'" C1* C 0 1 N N R 12.590 10.463 -2.923 -0.028 -0.715 1.510 "C1'" ATR 21 ATR N9 N9 N 0 1 Y N N 11.833 10.231 -4.171 1.074 -0.138 2.282 N9 ATR 22 ATR C8 C8 C 0 1 Y N N 12.415 10.092 -5.415 1.896 0.872 1.882 C8 ATR 23 ATR N7 N7 N 0 1 Y N N 11.582 9.664 -6.303 2.765 1.134 2.815 N7 ATR 24 ATR C5 C5 C 0 1 Y N N 10.351 9.510 -5.612 2.553 0.314 3.872 C5 ATR 25 ATR C6 C6 C 0 1 Y N N 9.068 9.036 -6.005 3.166 0.136 5.124 C6 ATR 26 ATR N6 N6 N 0 1 N N N 8.860 8.633 -7.262 4.241 0.920 5.503 N6 ATR 27 ATR N1 N1 N 0 1 Y N N 8.077 9.000 -5.051 2.686 -0.798 5.937 N1 ATR 28 ATR C2 C2 C 0 1 Y N N 8.334 9.413 -3.808 1.660 -1.551 5.584 C2 ATR 29 ATR N3 N3 N 0 1 Y N N 9.474 9.870 -3.314 1.058 -1.424 4.420 N3 ATR 30 ATR C4 C4 C 0 1 Y N N 10.473 9.883 -4.286 1.468 -0.516 3.541 C4 ATR 31 ATR HOB2 2HOB H 0 0 N N N 10.302 5.742 1.568 1.769 -0.208 -8.454 HOB2 ATR 32 ATR HOB3 3HOB H 0 0 N N N 8.359 7.133 0.780 -0.863 -1.070 -7.269 HOB3 ATR 33 ATR HOA2 2HOA H 0 0 N N N 8.824 10.382 3.346 1.142 1.538 -3.659 HOA2 ATR 34 ATR "H5'1" 1H5* H 0 0 N N N 11.102 8.735 0.113 -2.052 -0.141 -2.373 "H5'1" ATR 35 ATR "H5'2" 2H5* H 0 0 N N N 10.037 9.414 -1.036 -0.781 0.988 -1.847 "H5'2" ATR 36 ATR "H4'" H4* H 0 1 N N N 12.555 10.747 0.000 -1.373 -1.738 -0.590 "H4'" ATR 37 ATR "H3'" H3* H 0 1 N N N 10.397 11.773 -1.898 -2.170 1.108 0.046 "H3'" ATR 38 ATR "HO3'" *HO3 H 0 0 N N N 11.143 13.847 -1.084 -3.670 -0.589 -0.421 "HO3'" ATR 39 ATR "H2'" H2* H 0 1 N N N 12.375 12.820 -3.231 -1.113 1.080 2.102 "H2'" ATR 40 ATR HOP2 2HOP H 0 0 N N N 15.064 13.285 -5.100 -3.469 0.410 5.751 HOP2 ATR 41 ATR HOP3 3HOP H 0 0 N N N 16.740 13.382 -3.102 -0.591 0.108 4.914 HOP3 ATR 42 ATR "H1'" H1* H 0 1 N N N 13.658 10.182 -3.078 -0.158 -1.767 1.763 "H1'" ATR 43 ATR H8 H8 H 0 1 N N N 13.464 10.306 -5.679 1.836 1.380 0.931 H8 ATR 44 ATR HN61 1HN6 H 0 0 N N N 7.940 8.293 -7.543 4.654 0.791 6.371 HN61 ATR 45 ATR HN62 2HN6 H 0 0 N N N 9.551 7.918 -7.490 4.585 1.597 4.899 HN62 ATR 46 ATR H2 H2 H 0 1 N N N 7.493 9.371 -3.095 1.302 -2.299 6.275 H2 ATR 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ATR PB O1B DOUB N N 1 ATR PB O2B SING N N 2 ATR PB O3B SING N N 3 ATR PB O3A SING N N 4 ATR O2B HOB2 SING N N 5 ATR O3B HOB3 SING N N 6 ATR PA O1A DOUB N N 7 ATR PA O2A SING N N 8 ATR PA O3A SING N N 9 ATR PA "O5'" SING N N 10 ATR O2A HOA2 SING N N 11 ATR "O5'" "C5'" SING N N 12 ATR "C5'" "C4'" SING N N 13 ATR "C5'" "H5'1" SING N N 14 ATR "C5'" "H5'2" SING N N 15 ATR "C4'" "O4'" SING N N 16 ATR "C4'" "C3'" SING N N 17 ATR "C4'" "H4'" SING N N 18 ATR "O4'" "C1'" SING N N 19 ATR "C3'" "O3'" SING N N 20 ATR "C3'" "C2'" SING N N 21 ATR "C3'" "H3'" SING N N 22 ATR "O3'" "HO3'" SING N N 23 ATR "C2'" "O2'" SING N N 24 ATR "C2'" "C1'" SING N N 25 ATR "C2'" "H2'" SING N N 26 ATR "O2'" "P2'" SING N N 27 ATR "P2'" O1P DOUB N N 28 ATR "P2'" O2P SING N N 29 ATR "P2'" O3P SING N N 30 ATR O2P HOP2 SING N N 31 ATR O3P HOP3 SING N N 32 ATR "C1'" N9 SING N N 33 ATR "C1'" "H1'" SING N N 34 ATR N9 C8 SING Y N 35 ATR N9 C4 SING Y N 36 ATR C8 N7 DOUB Y N 37 ATR C8 H8 SING N N 38 ATR N7 C5 SING Y N 39 ATR C5 C6 SING Y N 40 ATR C5 C4 DOUB Y N 41 ATR C6 N6 SING N N 42 ATR C6 N1 DOUB Y N 43 ATR N6 HN61 SING N N 44 ATR N6 HN62 SING N N 45 ATR N1 C2 SING Y N 46 ATR C2 N3 DOUB Y N 47 ATR C2 H2 SING N N 48 ATR N3 C4 SING Y N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ATR SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(OP(=O)(O)O)C3O" ATR SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O[P](O)(O)=O" ATR SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O[P](O)(O)=O" ATR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O)O)OP(=O)(O)O)N" ATR SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)OP(=O)(O)O)N" ATR InChI InChI 1.03 "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(27-29(17,18)19)6(16)4(26-10)1-25-31(23,24)28-30(20,21)22/h2-4,6-7,10,16H,1H2,(H,23,24)(H2,11,12,13)(H2,17,18,19)(H2,20,21,22)/t4-,6-,7-,10-/m1/s1" ATR InChIKey InChI 1.03 YPTPYQSAVGGMFN-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ATR "SYSTEMATIC NAME" ACDLabs 10.04 ;adenosine 2'-(dihydrogen phosphate) 5'-(trihydrogen diphosphate) ; ATR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ATR "Create component" 1999-07-08 EBI ATR "Modify descriptor" 2011-06-04 RCSB #