data_ATY # _chem_comp.id ATY _chem_comp.name "3'-O-ACETYLTHYMIDINE-5'-DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 N2 O12 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-03-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 444.225 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ATY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DZT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ATY PA PA P 0 1 N N R 14.108 54.273 43.068 -0.164 0.079 -3.060 PA ATY 1 ATY O1A O1A O 0 1 N N N 14.054 55.072 41.815 1.128 0.085 -3.779 O1A ATY 2 ATY O2A O2A O 0 1 N N N 12.780 54.242 43.746 -0.638 -1.440 -2.820 O2A ATY 3 ATY O3A O3A O 0 1 N N N 15.255 54.922 44.074 -1.270 0.854 -3.937 O3A ATY 4 ATY PB PB P 0 1 N N N 16.800 55.237 43.989 -1.391 0.066 -5.336 PB ATY 5 ATY O1B O1B O 0 1 N N N 17.113 54.674 42.520 -1.807 -1.330 -5.080 O1B ATY 6 ATY O2B O2B O 0 1 N N N 17.096 56.700 44.055 -2.485 0.791 -6.267 O2B ATY 7 ATY O3B O3B O 0 1 N N N 17.600 54.491 45.032 0.036 0.072 -6.080 O3B ATY 8 ATY "O5'" O5* O 0 1 N N N 14.620 52.781 42.795 0.007 0.817 -1.640 "O5'" ATY 9 ATY "C5'" C5* C 0 1 N N N 14.781 51.752 43.812 0.996 0.086 -0.912 "C5'" ATY 10 ATY "C4'" C4* C 0 1 N N R 14.804 50.408 43.075 1.209 0.739 0.455 "C4'" ATY 11 ATY "O4'" O4* O 0 1 N N N 13.452 50.083 42.562 -0.015 0.712 1.222 "O4'" ATY 12 ATY "C3'" C3* C 0 1 N N S 15.742 50.411 41.845 2.217 -0.074 1.296 "C3'" ATY 13 ATY "O3'" O3* O 0 1 N N N 16.410 49.133 41.638 3.540 0.518 1.220 "O3'" ATY 14 ATY CR CR C 0 1 N N N 17.631 49.176 40.896 4.630 -0.251 1.364 CR ATY 15 ATY OR OR O 0 1 N N N 18.405 48.192 40.722 4.510 -1.437 1.559 OR ATY 16 ATY CHR CHR C 0 1 N N N 18.090 50.445 40.204 6.003 0.364 1.285 CHR ATY 17 ATY "C2'" C2* C 0 1 N N N 14.723 50.683 40.728 1.666 0.015 2.737 "C2'" ATY 18 ATY "C1'" C1* C 0 1 N N R 13.509 49.885 41.150 0.390 0.874 2.599 "C1'" ATY 19 ATY N1 N1 N 0 1 N N N 12.253 50.246 40.386 -0.653 0.386 3.502 N1 ATY 20 ATY C2 C2 C 0 1 N N N 11.400 49.247 39.907 -1.111 -0.872 3.374 C2 ATY 21 ATY O2 O2 O 0 1 N N N 11.593 48.047 40.066 -0.647 -1.593 2.511 O2 ATY 22 ATY N3 N3 N 0 1 N N N 10.297 49.737 39.217 -2.066 -1.348 4.194 N3 ATY 23 ATY C4 C4 C 0 1 N N N 9.945 51.077 38.942 -2.590 -0.562 5.155 C4 ATY 24 ATY O4 O4 O 0 1 N N N 8.926 51.337 38.310 -3.458 -0.990 5.894 O4 ATY 25 ATY C5 C5 C 0 1 N N N 10.889 52.023 39.468 -2.122 0.766 5.298 C5 ATY 26 ATY C5M C5M C 0 1 N N N 10.737 53.486 39.266 -2.691 1.666 6.364 C5M ATY 27 ATY C6 C6 C 0 1 N N N 11.952 51.602 40.140 -1.159 1.216 4.465 C6 ATY 28 ATY HPA2 2HPA H 0 0 N N N 12.814 53.731 44.546 -1.482 -1.399 -2.350 HPA2 ATY 29 ATY HPB2 2HPB H 0 0 N N N 18.025 56.889 44.003 -2.526 0.289 -7.093 HPB2 ATY 30 ATY HPB3 3HPB H 0 0 N N N 18.529 54.680 44.980 0.270 0.999 -6.227 HPB3 ATY 31 ATY "H5'2" 2H5* H 0 0 N N N 15.670 51.912 44.464 1.934 0.092 -1.467 "H5'2" ATY 32 ATY "H5'1" 1H5* H 0 0 N N N 14.009 51.801 44.615 0.661 -0.941 -0.775 "H5'1" ATY 33 ATY "H4'" H4* H 0 1 N N N 15.166 49.663 43.821 1.559 1.765 0.334 "H4'" ATY 34 ATY "H3'" H3* H 0 1 N N N 16.583 51.139 41.921 2.244 -1.111 0.962 "H3'" ATY 35 ATY HHR3 3HHR H 0 0 N N N 19.042 50.478 39.625 6.757 -0.409 1.425 HHR3 ATY 36 ATY HHR2 2HHR H 0 0 N N N 17.267 50.787 39.533 6.137 0.829 0.308 HHR2 ATY 37 ATY HHR1 1HHR H 0 0 N N N 18.121 51.259 40.964 6.109 1.119 2.064 HHR1 ATY 38 ATY "H2'2" 2H2* H 0 0 N N N 14.521 51.763 40.540 1.419 -0.977 3.114 "H2'2" ATY 39 ATY "H2'1" 1H2* H 0 0 N N N 15.092 50.452 39.701 2.387 0.504 3.392 "H2'1" ATY 40 ATY "H1'" H1* H 0 1 N N N 13.589 48.800 40.903 0.613 1.920 2.808 "H1'" ATY 41 ATY H3 H3 H 0 1 N N N 9.662 49.019 38.866 -2.382 -2.259 4.090 H3 ATY 42 ATY H5M3 3H5M H 0 0 N N N 11.469 54.220 39.674 -3.450 1.125 6.929 H5M3 ATY 43 ATY H5M2 2H5M H 0 0 N N N 10.648 53.669 38.169 -1.894 1.981 7.037 H5M2 ATY 44 ATY H5M1 1H5M H 0 0 N N N 9.725 53.775 39.634 -3.141 2.542 5.898 H5M1 ATY 45 ATY H6 H6 H 0 1 N N N 12.609 52.408 40.507 -0.789 2.226 4.559 H6 ATY 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ATY PA O1A DOUB N N 1 ATY PA O2A SING N N 2 ATY PA O3A SING N N 3 ATY PA "O5'" SING N N 4 ATY O2A HPA2 SING N N 5 ATY O3A PB SING N N 6 ATY PB O1B DOUB N N 7 ATY PB O2B SING N N 8 ATY PB O3B SING N N 9 ATY O2B HPB2 SING N N 10 ATY O3B HPB3 SING N N 11 ATY "O5'" "C5'" SING N N 12 ATY "C5'" "C4'" SING N N 13 ATY "C5'" "H5'2" SING N N 14 ATY "C5'" "H5'1" SING N N 15 ATY "C4'" "O4'" SING N N 16 ATY "C4'" "C3'" SING N N 17 ATY "C4'" "H4'" SING N N 18 ATY "O4'" "C1'" SING N N 19 ATY "C3'" "O3'" SING N N 20 ATY "C3'" "C2'" SING N N 21 ATY "C3'" "H3'" SING N N 22 ATY "O3'" CR SING N N 23 ATY CR OR DOUB N N 24 ATY CR CHR SING N N 25 ATY CHR HHR3 SING N N 26 ATY CHR HHR2 SING N N 27 ATY CHR HHR1 SING N N 28 ATY "C2'" "C1'" SING N N 29 ATY "C2'" "H2'2" SING N N 30 ATY "C2'" "H2'1" SING N N 31 ATY "C1'" N1 SING N N 32 ATY "C1'" "H1'" SING N N 33 ATY N1 C2 SING N N 34 ATY N1 C6 SING N N 35 ATY C2 O2 DOUB N N 36 ATY C2 N3 SING N N 37 ATY N3 C4 SING N N 38 ATY N3 H3 SING N N 39 ATY C4 O4 DOUB N N 40 ATY C4 C5 SING N N 41 ATY C5 C5M SING N N 42 ATY C5 C6 DOUB N N 43 ATY C5M H5M3 SING N N 44 ATY C5M H5M2 SING N N 45 ATY C5M H5M1 SING N N 46 ATY C6 H6 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ATY SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(=C1)C)CC2OC(=O)C" ATY SMILES_CANONICAL CACTVS 3.341 "CC(=O)O[C@H]1C[C@@H](O[C@@H]1CO[P@](O)(=O)O[P](O)(O)=O)N2C=C(C)C(=O)NC2=O" ATY SMILES CACTVS 3.341 "CC(=O)O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=C(C)C(=O)NC2=O" ATY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)OC(=O)C" ATY SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)O)OC(=O)C" ATY InChI InChI 1.03 "InChI=1S/C12H18N2O12P2/c1-6-4-14(12(17)13-11(6)16)10-3-8(24-7(2)15)9(25-10)5-23-28(21,22)26-27(18,19)20/h4,8-10H,3,5H2,1-2H3,(H,21,22)(H,13,16,17)(H2,18,19,20)/t8-,9+,10+/m0/s1" ATY InChIKey InChI 1.03 UWSIAAWKEICIJY-IVZWLZJFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ATY "SYSTEMATIC NAME" ACDLabs 10.04 ;3'-O-acetylthymidine 5'-(trihydrogen diphosphate) ; ATY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-2-[(hydroxy-phosphonooxy-phosphoryl)oxymethyl]-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-3-yl] ethanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ATY "Create component" 2000-03-09 EBI ATY "Modify descriptor" 2011-06-04 RCSB #