data_AU1 # _chem_comp.id AU1 _chem_comp.name "5'-O-[(R)-hydroxy(phosphonoamino)phosphoryl]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N6 O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Adenosine 5-(alpha,beta-imido)diphosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-05-03 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.216 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AU1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4KH5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AU1 O1A O1A O 0 1 N N N -5.590 14.726 -26.560 -4.253 -0.282 -2.135 O1A AU1 1 AU1 PA PA P 0 1 N N N -4.733 13.483 -26.466 -3.638 -0.496 -0.662 PA AU1 2 AU1 O2A O2A O 0 1 N N N -4.092 12.963 -27.730 -4.401 -1.550 0.043 O2A AU1 3 AU1 N3A N3A N 0 1 N N N -5.722 12.227 -25.748 -3.741 0.945 0.203 N3A AU1 4 AU1 PB PB P 0 1 N N N -6.199 10.737 -26.537 -5.341 1.445 0.353 PB AU1 5 AU1 O2B O2B O 0 1 N N N -5.050 10.316 -27.422 -5.920 1.657 -0.993 O2B AU1 6 AU1 O1B O1B O 0 1 N N N -7.456 11.093 -27.294 -6.186 0.316 1.129 O1B AU1 7 AU1 O3B O3B O 0 1 N N N -6.423 9.799 -25.375 -5.396 2.823 1.184 O3B AU1 8 AU1 "O5'" O5* O 0 1 N N N -3.525 13.771 -25.436 -2.096 -0.940 -0.784 "O5'" AU1 9 AU1 "C5'" C5* C 0 1 N N N -3.006 15.080 -25.205 -1.360 -1.503 0.305 "C5'" AU1 10 AU1 "C4'" C4* C 0 1 N N R -1.945 15.023 -24.113 0.069 -1.809 -0.150 "C4'" AU1 11 AU1 "C3'" C3* C 0 1 N N S -2.482 15.484 -22.759 0.846 -2.533 0.971 "C3'" AU1 12 AU1 "O3'" O3* O 0 1 N N N -2.395 14.396 -21.826 0.857 -3.943 0.744 "O3'" AU1 13 AU1 "C2'" C2* C 0 1 N N R -1.585 16.640 -22.330 2.276 -1.957 0.868 "C2'" AU1 14 AU1 "O2'" O2* O 0 1 N N N -1.072 16.457 -21.001 3.214 -2.994 0.574 "O2'" AU1 15 AU1 "C1'" C1* C 0 1 N N R -0.438 16.646 -23.337 2.193 -0.953 -0.303 "C1'" AU1 16 AU1 "O4'" O4* O 0 1 N N N -0.857 15.880 -24.466 0.799 -0.584 -0.375 "O4'" AU1 17 AU1 N9 N9 N 0 1 Y N N 0.007 18.002 -23.771 3.022 0.223 -0.027 N9 AU1 18 AU1 C4 C4 C 0 1 Y N N 1.201 18.264 -24.314 4.365 0.347 -0.276 C4 AU1 19 AU1 C5 C5 C 0 1 Y N N 1.227 19.715 -24.591 4.720 1.640 0.144 C5 AU1 20 AU1 N7 N7 N 0 1 Y N N 0.035 20.201 -24.196 3.595 2.228 0.619 N7 AU1 21 AU1 C8 C8 C 0 1 Y N N -0.689 19.158 -23.715 2.598 1.398 0.520 C8 AU1 22 AU1 N3 N3 N 0 1 Y N N 2.304 17.522 -24.618 5.301 -0.445 -0.789 N3 AU1 23 AU1 C2 C2 C 0 1 Y N N 3.405 18.088 -25.163 6.544 -0.028 -0.904 C2 AU1 24 AU1 N1 N1 N 0 1 Y N N 3.494 19.408 -25.447 6.925 1.178 -0.523 N1 AU1 25 AU1 C6 C6 C 0 1 Y N N 2.473 20.266 -25.195 6.059 2.040 0.002 C6 AU1 26 AU1 N6 N6 N 0 1 N N N 2.588 21.584 -25.490 6.468 3.301 0.397 N6 AU1 27 AU1 H1 H1 H 0 1 N N N -5.610 15.030 -27.460 -3.801 0.396 -2.655 H1 AU1 28 AU1 H2 H2 H 0 1 N N N -6.578 12.677 -25.492 -3.176 1.663 -0.224 H2 AU1 29 AU1 H3 H3 H 0 1 N N N -7.305 10.988 -28.226 -5.862 0.125 2.020 H3 AU1 30 AU1 H4 H4 H 0 1 N N N -5.786 9.095 -25.409 -6.290 3.171 1.309 H4 AU1 31 AU1 H5 H5 H 0 1 N N N -2.557 15.465 -26.132 -1.333 -0.792 1.131 H5 AU1 32 AU1 H6 H6 H 0 1 N N N -3.822 15.747 -24.889 -1.842 -2.423 0.632 H6 AU1 33 AU1 H7 H7 H 0 1 N N N -1.592 13.986 -24.017 0.056 -2.416 -1.055 H7 AU1 34 AU1 H8 H8 H 0 1 N N N -3.519 15.834 -22.867 0.412 -2.305 1.945 H8 AU1 35 AU1 H9 H9 H 0 1 N N N -2.727 14.675 -20.981 1.333 -4.447 1.418 H9 AU1 36 AU1 H10 H10 H 0 1 N N N -2.143 17.585 -22.405 2.550 -1.446 1.792 H10 AU1 37 AU1 H11 H11 H 0 1 N N N -1.792 16.454 -20.381 3.262 -3.684 1.250 H11 AU1 38 AU1 H12 H12 H 0 1 N N N 0.419 16.143 -22.866 2.508 -1.428 -1.232 H12 AU1 39 AU1 H13 H13 H 0 1 N N N -1.696 19.242 -23.335 1.583 1.610 0.822 H13 AU1 40 AU1 H14 H14 H 0 1 N N N 4.253 17.456 -25.382 7.280 -0.696 -1.324 H14 AU1 41 AU1 H15 H15 H 0 1 N N N 3.488 21.760 -25.888 7.395 3.566 0.293 H15 AU1 42 AU1 H16 H16 H 0 1 N N N 1.878 21.842 -26.145 5.826 3.921 0.779 H16 AU1 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AU1 O2A PA DOUB N N 1 AU1 O2B PB DOUB N N 2 AU1 O1B PB SING N N 3 AU1 O1A PA SING N N 4 AU1 PB N3A SING N N 5 AU1 PB O3B SING N N 6 AU1 PA N3A SING N N 7 AU1 PA "O5'" SING N N 8 AU1 N6 C6 SING N N 9 AU1 N1 C6 DOUB Y N 10 AU1 N1 C2 SING Y N 11 AU1 "O5'" "C5'" SING N N 12 AU1 "C5'" "C4'" SING N N 13 AU1 C6 C5 SING Y N 14 AU1 C2 N3 DOUB Y N 15 AU1 N3 C4 SING Y N 16 AU1 C5 C4 DOUB Y N 17 AU1 C5 N7 SING Y N 18 AU1 "O4'" "C4'" SING N N 19 AU1 "O4'" "C1'" SING N N 20 AU1 C4 N9 SING Y N 21 AU1 N7 C8 DOUB Y N 22 AU1 "C4'" "C3'" SING N N 23 AU1 N9 C8 SING Y N 24 AU1 N9 "C1'" SING N N 25 AU1 "C1'" "C2'" SING N N 26 AU1 "C3'" "C2'" SING N N 27 AU1 "C3'" "O3'" SING N N 28 AU1 "C2'" "O2'" SING N N 29 AU1 O1A H1 SING N N 30 AU1 N3A H2 SING N N 31 AU1 O1B H3 SING N N 32 AU1 O3B H4 SING N N 33 AU1 "C5'" H5 SING N N 34 AU1 "C5'" H6 SING N N 35 AU1 "C4'" H7 SING N N 36 AU1 "C3'" H8 SING N N 37 AU1 "O3'" H9 SING N N 38 AU1 "C2'" H10 SING N N 39 AU1 "O2'" H11 SING N N 40 AU1 "C1'" H12 SING N N 41 AU1 C8 H13 SING N N 42 AU1 C2 H14 SING N N 43 AU1 N6 H15 SING N N 44 AU1 N6 H16 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AU1 SMILES ACDLabs 12.01 "O=P(O)(O)NP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" AU1 InChI InChI 1.03 "InChI=1S/C10H16N6O9P2/c11-8-5-9(13-2-12-8)16(3-14-5)10-7(18)6(17)4(25-10)1-24-27(22,23)15-26(19,20)21/h2-4,6-7,10,17-18H,1H2,(H2,11,12,13)(H4,15,19,20,21,22,23)/t4-,6-,7-,10-/m1/s1" AU1 InChIKey InChI 1.03 FJNYKURUYWTJIG-KQYNXXCUSA-N AU1 SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3O" AU1 SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3O" AU1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(NP(=O)(O)O)O)O)O)N" AU1 SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(NP(=O)(O)O)O)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AU1 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-hydroxy(phosphonoamino)phosphoryl]adenosine" AU1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AU1 "Create component" 2013-05-03 RCSB AU1 "Modify atom id" 2013-06-04 RCSB AU1 "Initial release" 2013-07-17 RCSB AU1 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AU1 _pdbx_chem_comp_synonyms.name "Adenosine 5-(alpha,beta-imido)diphosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##