data_AV2
#
_chem_comp.id AV2
_chem_comp.name "ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H14 N5 O12 P2 V"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-08-05
_chem_comp.pdbx_modified_date 2012-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 509.133
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AV2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1M7G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AV2 PB PB P 0 1 N N N 69.407 41.232 12.433 -6.204 -1.265 0.546 PB AV2 1
AV2 O1B O1B O 0 1 N N N 70.384 40.441 13.256 -7.163 -0.550 -0.326 O1B AV2 2
AV2 O2B O2B O 0 1 N N N 67.936 40.766 12.521 -6.813 -1.381 2.032 O2B AV2 3
AV2 O3B O3B O 0 1 N N N 69.541 42.731 12.663 -5.939 -2.740 -0.042 O3B AV2 4
AV2 PA PA P 0 1 N N S 69.100 40.791 9.527 -3.944 0.344 -0.498 PA AV2 5
AV2 O1A O1A O 0 1 N N N 68.319 39.573 9.509 -3.949 -0.409 -1.772 O1A AV2 6
AV2 O2A O2A O 0 1 N N N 68.392 42.041 9.251 -4.580 1.804 -0.735 O2A AV2 7
AV2 O3A O3A O 0 1 N N N 69.903 40.952 10.923 -4.816 -0.450 0.598 O3A AV2 8
AV2 "O5'" O5* O 0 1 N N N 70.236 40.479 8.537 -2.430 0.497 0.029 "O5'" AV2 9
AV2 "C5'" C5* C 0 1 N N N 71.241 41.431 8.202 -1.384 1.064 -0.762 "C5'" AV2 10
AV2 "C4'" C4* C 0 1 N N R 71.812 41.065 6.838 -0.080 1.058 0.037 "C4'" AV2 11
AV2 "O4'" O4* O 0 1 N N N 72.655 39.888 6.900 0.369 -0.296 0.271 "O4'" AV2 12
AV2 "C3'" C3* C 0 1 N N R 70.865 40.772 5.725 1.072 1.670 -0.793 "C3'" AV2 13
AV2 "O3'" O3* O 0 1 N N N 71.211 41.506 4.524 0.987 3.103 -0.778 "O3'" AV2 14
AV2 "C2'" C2* C 0 1 N N R 70.968 39.298 5.472 2.321 1.042 -0.153 "C2'" AV2 15
AV2 "O2'" O2* O 0 1 N N N 70.611 39.048 4.105 2.891 1.873 0.902 "O2'" AV2 16
AV2 "C1'" C1* C 0 1 N N R 72.374 38.981 5.802 1.781 -0.234 0.534 "C1'" AV2 17
AV2 N9 N9 N 0 1 Y N N 72.593 37.646 6.257 2.444 -1.417 -0.021 N9 AV2 18
AV2 C8 C8 C 0 1 Y N N 71.955 36.942 7.218 1.983 -2.196 -1.039 C8 AV2 19
AV2 N7 N7 N 0 1 Y N N 72.493 35.738 7.344 2.822 -3.162 -1.276 N7 AV2 20
AV2 C5 C5 C 0 1 Y N N 73.491 35.647 6.468 3.873 -3.064 -0.425 C5 AV2 21
AV2 C6 C6 C 0 1 Y N N 74.419 34.663 6.131 5.049 -3.804 -0.219 C6 AV2 22
AV2 N6 N6 N 0 1 N N N 74.439 33.467 6.751 5.330 -4.917 -0.991 N6 AV2 23
AV2 N1 N1 N 0 1 Y N N 75.336 34.927 5.132 5.886 -3.410 0.736 N1 AV2 24
AV2 C2 C2 C 0 1 Y N N 75.374 36.126 4.451 5.626 -2.349 1.477 C2 AV2 25
AV2 N3 N3 N 0 1 Y N N 74.508 37.082 4.754 4.537 -1.626 1.320 N3 AV2 26
AV2 C4 C4 C 0 1 Y N N 73.549 36.888 5.754 3.645 -1.940 0.386 C4 AV2 27
AV2 V V V 0 1 N N N 71.231 40.419 2.851 2.541 3.558 0.160 V AV2 28
AV2 O1V O1V O 0 1 N N N 72.748 39.991 2.486 2.254 4.643 1.277 O1V AV2 29
AV2 O2V O2V O 0 1 N N N 70.185 40.024 1.714 3.887 4.097 -0.973 O2V AV2 30
AV2 HOB2 2HOB H 0 0 N N N 67.318 41.266 12.000 -7.652 -1.861 2.076 HOB2 AV2 31
AV2 HOB3 3HOB H 0 0 N N N 68.923 43.231 12.142 -5.319 -3.266 0.480 HOB3 AV2 32
AV2 HOA2 2HOA H 0 0 N N N 68.904 42.840 9.262 -4.608 2.354 0.060 HOA2 AV2 33
AV2 "H5'1" 1H5* H 0 0 N N N 70.868 42.481 8.243 -1.257 0.477 -1.671 "H5'1" AV2 34
AV2 "H5'2" 2H5* H 0 0 N N N 72.027 41.518 8.987 -1.644 2.089 -1.026 "H5'2" AV2 35
AV2 "H4'" H4* H 0 1 N N N 72.342 42.016 6.601 -0.204 1.591 0.979 "H4'" AV2 36
AV2 "H3'" H3* H 0 1 N N N 69.829 41.079 6.000 0.993 1.318 -1.821 "H3'" AV2 37
AV2 "H2'" H2* H 0 1 N N N 70.285 38.656 6.076 3.070 0.808 -0.910 "H2'" AV2 38
AV2 "H1'" H1* H 0 1 N N N 73.016 39.083 4.896 1.956 -0.178 1.609 "H1'" AV2 39
AV2 H8 H8 H 0 1 N N N 71.105 37.303 7.821 1.057 -2.036 -1.572 H8 AV2 40
AV2 HN61 1HN6 H 0 0 N N N 75.118 32.747 6.504 4.712 -5.195 -1.685 HN61 AV2 41
AV2 HN62 2HN6 H 0 0 N N N 73.507 33.058 6.672 6.146 -5.420 -0.839 HN62 AV2 42
AV2 H2 H2 H 0 1 N N N 76.108 36.323 3.651 6.333 -2.064 2.243 H2 AV2 43
AV2 HV HV H 0 1 N N N 70.195 39.506 0.917 4.707 4.340 -0.522 HV AV2 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AV2 PB O1B DOUB N N 1
AV2 PB O2B SING N N 2
AV2 PB O3B SING N N 3
AV2 PB O3A SING N N 4
AV2 O2B HOB2 SING N N 5
AV2 O3B HOB3 SING N N 6
AV2 PA O1A DOUB N N 7
AV2 PA O2A SING N N 8
AV2 PA O3A SING N N 9
AV2 PA "O5'" SING N N 10
AV2 O2A HOA2 SING N N 11
AV2 "O5'" "C5'" SING N N 12
AV2 "C5'" "C4'" SING N N 13
AV2 "C5'" "H5'1" SING N N 14
AV2 "C5'" "H5'2" SING N N 15
AV2 "C4'" "O4'" SING N N 16
AV2 "C4'" "C3'" SING N N 17
AV2 "C4'" "H4'" SING N N 18
AV2 "O4'" "C1'" SING N N 19
AV2 "C3'" "O3'" SING N N 20
AV2 "C3'" "C2'" SING N N 21
AV2 "C3'" "H3'" SING N N 22
AV2 "O3'" V SING N N 23
AV2 "C2'" "O2'" SING N N 24
AV2 "C2'" "C1'" SING N N 25
AV2 "C2'" "H2'" SING N N 26
AV2 "O2'" V SING N N 27
AV2 "C1'" N9 SING N N 28
AV2 "C1'" "H1'" SING N N 29
AV2 N9 C8 SING Y N 30
AV2 N9 C4 SING Y N 31
AV2 C8 N7 DOUB Y N 32
AV2 C8 H8 SING N N 33
AV2 N7 C5 SING Y N 34
AV2 C5 C6 DOUB Y N 35
AV2 C5 C4 SING Y N 36
AV2 C6 N6 SING N N 37
AV2 C6 N1 SING Y N 38
AV2 N6 HN61 SING N N 39
AV2 N6 HN62 SING N N 40
AV2 N1 C2 DOUB Y N 41
AV2 C2 N3 SING Y N 42
AV2 C2 H2 SING N N 43
AV2 N3 C4 DOUB Y N 44
AV2 V O1V DOUB N N 45
AV2 V O2V SING N N 46
AV2 O2V HV SING N N 47
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AV2 SMILES ACDLabs 10.04 "O=[V]1(OC2C(OC(C2O1)COP(=O)(O)OP(=O)(O)O)n3c4ncnc(N)c4nc3)O"
AV2 InChI InChI 1.03
"InChI=1S/C10H13N5O10P2.H2O.O.V/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20;;;/h2-4,6-7,10H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20);1H2;;/q-2;;;+3/p-1/t4-,6-,7-,10-;;;/m1.../s1"
AV2 InChIKey InChI 1.03 PCCLXHWRDHBBRF-MSQVLRTGSA-M
AV2 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@H]4O[V](O)(=O)O[C@@H]34"
AV2 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH]4O[V](O)(=O)O[CH]34"
AV2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O[V](=O)(O4)O)N"
AV2 SMILES "OpenEye OEToolkits" 1.7.5 "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(O)OP(=O)(O)O)O[V](=O)(O4)O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AV2 "SYSTEMATIC NAME" ACDLabs 10.04 "[adenosinato(2-)-kappa~2~O~2'~,O~3'~](hydroxy)oxovanadium"
AV2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,3S,5R,6R,8R)-6-(6-aminopurin-9-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-vanadabicyclo[3.3.0]octan-8-yl]methyl phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AV2 "Create component" 2002-08-05 RCSB
AV2 "Modify descriptor" 2011-06-04 RCSB
AV2 "Modify descriptor" 2012-01-05 RCSB
AV2 "Modify coordinates" 2012-01-05 RCSB
#