data_AVV # _chem_comp.id AVV _chem_comp.name ;[(2R,3S,4R,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H22 F N5 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-fluoro-adenosine diphosphate ribose, 2F-ADPRI" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-14 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 561.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AVV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3I9J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AVV PA PA P 0 1 N N N 2.410 0.874 -19.670 -1.464 -2.810 0.408 PA AVV 1 AVV PN PN P 0 1 N N N 4.568 -0.892 -20.440 -4.093 -1.460 0.638 PN AVV 2 AVV F1A F1A F 0 1 N N N 9.182 7.421 -17.793 7.752 2.828 -2.146 F1A AVV 3 AVV N1A N1A N 0 1 Y N N 9.602 7.292 -20.148 7.246 3.349 0.038 N1A AVV 4 AVV O1A O1A O 0 1 N N N 1.250 1.008 -18.705 -1.822 -4.265 -0.182 O1A AVV 5 AVV O1N O1N O 0 1 N N N 4.600 -2.430 -20.589 -5.115 -2.630 0.215 O1N AVV 6 AVV C2A C2A C 0 1 Y N N 8.779 7.152 -19.060 7.027 2.598 -1.029 C2A AVV 7 AVV O2A O2A O 0 1 N N N 2.171 1.191 -21.140 -1.337 -2.893 1.881 O2A AVV 8 AVV O2N O2N O 0 1 N N N 4.597 -0.018 -21.728 -4.006 -1.391 2.114 O2N AVV 9 AVV O3 O3 O 0 1 N N N 3.165 -0.569 -19.657 -2.636 -1.774 0.029 O3 AVV 10 AVV N3A N3A N 0 1 Y N N 7.513 6.742 -19.221 6.128 1.634 -1.042 N3A AVV 11 AVV C4A C4A C 0 1 Y N N 7.061 6.464 -20.454 5.395 1.377 0.037 C4A AVV 12 AVV C5A C5A C 0 1 Y N N 7.852 6.587 -21.576 5.591 2.147 1.195 C5A AVV 13 AVV C6A C6A C 0 1 Y N N 9.166 7.018 -21.399 6.561 3.164 1.161 C6A AVV 14 AVV N6A N6A N 0 1 N N N 10.001 7.169 -22.446 6.797 3.953 2.273 N6A AVV 15 AVV N7A N7A N 0 1 Y N N 7.067 6.227 -22.629 4.728 1.685 2.133 N7A AVV 16 AVV C8A C8A C 0 1 Y N N 5.834 5.889 -22.158 4.033 0.704 1.635 C8A AVV 17 AVV N9A N9A N 0 1 Y N N 5.866 6.060 -20.826 4.407 0.476 0.344 N9A AVV 18 AVV "C1'A" "C1'A" C 0 0 N N R 4.868 5.831 -19.765 3.856 -0.544 -0.551 "C1'A" AVV 19 AVV "C1'N" "C1'N" C 0 0 N N N 8.966 -1.608 -17.377 -7.196 2.641 -2.102 "C1'N" AVV 20 AVV "C2'A" "C2'A" C 0 0 N N R 3.437 5.614 -20.243 4.683 -1.845 -0.458 "C2'A" AVV 21 AVV "O2'A" "O2'A" O 0 0 N N N 2.618 6.667 -19.710 5.618 -1.923 -1.536 "O2'A" AVV 22 AVV "C2'N" "C2'N" C 0 0 N N S 8.236 -1.748 -16.060 -8.203 2.774 -0.932 "C2'N" AVV 23 AVV "O2'N" "O2'N" O 0 0 N N N 9.086 -2.382 -15.110 -8.821 4.063 -0.934 "O2'N" AVV 24 AVV "C3'A" "C3'A" C 0 0 N N S 3.061 4.224 -19.719 3.629 -2.969 -0.573 "C3'A" AVV 25 AVV "O3'A" "O3'A" O 0 0 N N N 2.031 4.188 -18.702 3.881 -3.775 -1.726 "O3'A" AVV 26 AVV "C3'N" "C3'N" C 0 0 N N S 6.975 -2.523 -16.473 -7.288 2.602 0.305 "C3'N" AVV 27 AVV "O3'N" "O3'N" O 0 0 N N N 7.273 -3.912 -16.608 -6.932 3.877 0.845 "O3'N" AVV 28 AVV "C4'A" "C4'A" C 0 0 N N R 4.320 3.671 -19.080 2.290 -2.214 -0.723 "C4'A" AVV 29 AVV "O4'A" "O4'A" O 0 0 N N N 5.361 4.632 -19.152 2.527 -0.920 -0.127 "O4'A" AVV 30 AVV "C4'N" "C4'N" C 0 0 N N R 6.658 -1.984 -17.872 -6.043 1.879 -0.244 "C4'N" AVV 31 AVV "O4'N" "O4'N" O 0 0 N N N 7.899 -1.492 -18.352 -6.275 1.629 -1.640 "O4'N" AVV 32 AVV "C5'A" "C5'A" C 0 0 N N N 4.653 2.366 -19.750 1.176 -2.951 0.024 "C5'A" AVV 33 AVV "O5'A" "O5'A" O 0 0 N N N 3.695 1.616 -19.030 -0.073 -2.302 -0.222 "O5'A" AVV 34 AVV "C5'N" "C5'N" C 0 0 N N N 5.754 -0.772 -17.970 -5.842 0.556 0.498 "C5'N" AVV 35 AVV "O5'N" "O5'N" O 0 0 N N N 5.702 -0.408 -19.344 -4.623 -0.052 0.065 "O5'N" AVV 36 AVV HAO1 HAO1 H 0 0 N N N 0.476 1.291 -19.177 -1.920 -4.285 -1.144 HAO1 AVV 37 AVV HNO1 HNO1 H 0 0 N N N 4.636 -2.659 -21.510 -5.221 -2.733 -0.741 HNO1 AVV 38 AVV HAN6 HAN6 H 0 0 N N N 10.891 7.487 -22.120 6.291 3.808 3.087 HAN6 AVV 39 AVV HANA HANA H 0 0 N N N 10.111 6.292 -22.914 7.470 4.652 2.237 HANA AVV 40 AVV HC8 HC8 H 0 1 N N N 4.992 5.549 -22.743 3.272 0.152 2.166 HC8 AVV 41 AVV "HC1'" "HC1'" H 0 0 N N N 4.780 6.714 -19.115 3.837 -0.177 -1.578 "HC1'" AVV 42 AVV HC1A HC1A H 0 0 N N N 9.602 -2.483 -17.579 -7.703 2.313 -3.009 HC1A AVV 43 AVV HC1B HC1B H 0 0 N N N 9.615 -0.720 -17.384 -6.679 3.585 -2.272 HC1B AVV 44 AVV "HC2'" "HC2'" H 0 0 N N N 3.306 5.648 -21.335 5.198 -1.902 0.501 "HC2'" AVV 45 AVV "HO2'" "HO2'" H 0 0 N N N 1.721 6.548 -19.998 6.164 -2.721 -1.526 "HO2'" AVV 46 AVV HC2A HC2A H 0 0 N N N 7.954 -0.817 -15.547 -8.954 1.985 -0.973 HC2A AVV 47 AVV HO2A HO2A H 0 0 N N N 8.627 -2.470 -14.283 -9.333 4.252 -1.733 HO2A AVV 48 AVV "HC3'" "HC3'" H 0 0 N N N 2.663 3.658 -20.574 3.623 -3.582 0.328 "HC3'" AVV 49 AVV "HO3'" "HO3'" H 0 0 N N N 1.871 3.288 -18.445 4.737 -4.225 -1.712 "HO3'" AVV 50 AVV HC3A HC3A H 0 0 N N N 6.161 -2.407 -15.742 -7.781 1.992 1.063 HC3A AVV 51 AVV HO3A HO3A H 0 0 N N N 6.488 -4.381 -16.863 -7.686 4.398 1.152 HO3A AVV 52 AVV "HC4'" "HC4'" H 0 0 N N N 4.174 3.467 -18.009 2.031 -2.105 -1.776 "HC4'" AVV 53 AVV HC4A HC4A H 0 0 N N N 6.155 -2.808 -18.400 -5.164 2.510 -0.121 HC4A AVV 54 AVV "HC5'" "HC5'" H 0 0 N N N 4.515 2.361 -20.841 1.125 -3.982 -0.325 "HC5'" AVV 55 AVV HC5A HC5A H 0 0 N N N 5.693 2.033 -19.616 1.387 -2.939 1.094 HC5A AVV 56 AVV HC5B HC5B H 0 0 N N N 4.747 -1.014 -17.600 -5.793 0.744 1.570 HC5B AVV 57 AVV HC5C HC5C H 0 0 N N N 6.158 0.056 -17.369 -6.676 -0.112 0.284 HC5C AVV 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AVV O2A PA DOUB N N 1 AVV PA O3 SING N N 2 AVV PA "O5'A" SING N N 3 AVV PA O1A SING N N 4 AVV O2N PN DOUB N N 5 AVV O1N PN SING N N 6 AVV PN O3 SING N N 7 AVV PN "O5'N" SING N N 8 AVV C2A F1A SING N N 9 AVV C6A N1A DOUB Y N 10 AVV N1A C2A SING Y N 11 AVV O1A HAO1 SING N N 12 AVV O1N HNO1 SING N N 13 AVV N3A C2A DOUB Y N 14 AVV C4A N3A SING Y N 15 AVV C5A C4A DOUB Y N 16 AVV N9A C4A SING Y N 17 AVV N7A C5A SING Y N 18 AVV C5A C6A SING Y N 19 AVV N6A C6A SING N N 20 AVV N6A HAN6 SING N N 21 AVV N6A HANA SING N N 22 AVV N7A C8A DOUB Y N 23 AVV C8A N9A SING Y N 24 AVV C8A HC8 SING N N 25 AVV N9A "C1'A" SING N N 26 AVV "C2'A" "C1'A" SING N N 27 AVV "C1'A" "O4'A" SING N N 28 AVV "C1'A" "HC1'" SING N N 29 AVV "O4'N" "C1'N" SING N N 30 AVV "C1'N" "C2'N" SING N N 31 AVV "C1'N" HC1A SING N N 32 AVV "C1'N" HC1B SING N N 33 AVV "C2'A" "C3'A" SING N N 34 AVV "C2'A" "O2'A" SING N N 35 AVV "C2'A" "HC2'" SING N N 36 AVV "O2'A" "HO2'" SING N N 37 AVV "C3'N" "C2'N" SING N N 38 AVV "C2'N" "O2'N" SING N N 39 AVV "C2'N" HC2A SING N N 40 AVV "O2'N" HO2A SING N N 41 AVV "C3'A" "C4'A" SING N N 42 AVV "C3'A" "O3'A" SING N N 43 AVV "C3'A" "HC3'" SING N N 44 AVV "O3'A" "HO3'" SING N N 45 AVV "C4'N" "C3'N" SING N N 46 AVV "O3'N" "C3'N" SING N N 47 AVV "C3'N" HC3A SING N N 48 AVV "O3'N" HO3A SING N N 49 AVV "C5'A" "C4'A" SING N N 50 AVV "O4'A" "C4'A" SING N N 51 AVV "C4'A" "HC4'" SING N N 52 AVV "O4'N" "C4'N" SING N N 53 AVV "C5'N" "C4'N" SING N N 54 AVV "C4'N" HC4A SING N N 55 AVV "C5'A" "O5'A" SING N N 56 AVV "C5'A" "HC5'" SING N N 57 AVV "C5'A" HC5A SING N N 58 AVV "O5'N" "C5'N" SING N N 59 AVV "C5'N" HC5B SING N N 60 AVV "C5'N" HC5C SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AVV SMILES ACDLabs 11.02 "O=P(OCC1OCC(O)C1O)(O)OP(=O)(O)OCC4OC(n3cnc2c(nc(F)nc23)N)C(O)C4O" AVV SMILES_CANONICAL CACTVS 3.352 "Nc1nc(F)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4OC[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O" AVV SMILES CACTVS 3.352 "Nc1nc(F)nc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4OC[CH](O)[CH]4O)[CH](O)[CH]3O" AVV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H](CO4)O)O)O)O)F)N" AVV SMILES "OpenEye OEToolkits" 1.7.0 "c1nc2c(nc(nc2n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(CO4)O)O)O)O)F)N" AVV InChI InChI 1.03 "InChI=1S/C15H22FN5O13P2/c16-15-19-12(17)8-13(20-15)21(4-18-8)14-11(25)10(24)7(33-14)3-32-36(28,29)34-35(26,27)31-2-6-9(23)5(22)1-30-6/h4-7,9-11,14,22-25H,1-3H2,(H,26,27)(H,28,29)(H2,17,19,20)/t5-,6+,7+,9-,10+,11+,14+/m0/s1" AVV InChIKey InChI 1.03 INVLSELIWGCOEO-ZVIMGNLFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AVV "SYSTEMATIC NAME" ACDLabs 11.02 "[(2R,3S,4R,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" AVV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[[(2R,3S,4R,5R)-5-(6-azanyl-2-fluoro-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4S)-3,4-dihydroxyoxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AVV "Create component" 2009-07-14 PDBJ AVV "Modify aromatic_flag" 2011-06-04 RCSB AVV "Modify descriptor" 2011-06-04 RCSB AVV "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id AVV _pdbx_chem_comp_synonyms.name "2-fluoro-adenosine diphosphate ribose, 2F-ADPRI" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##