data_AVW # _chem_comp.id AVW _chem_comp.name "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4S)-4-fluoro-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H22 F N5 O12 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ribosyl-2-fluoro-deoxy-adenosine diphosphate ribose; ribo-2'F-ADPR" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-14 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 545.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AVW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3I9N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AVW PA AP P 0 1 N N N 4.402 3.645 6.515 1.013 -2.171 -0.768 AP AVW 1 AVW PN NP P 0 1 N N N 3.717 4.600 4.000 3.791 -1.203 -1.132 NP AVW 2 AVW N1A AN1 N 0 1 Y N N 11.026 2.470 7.547 -8.254 2.900 -0.043 AN1 AVW 3 AVW O1A AO1 O 0 1 N N N 3.912 2.234 6.801 1.465 -3.471 -0.223 AO1 AVW 4 AVW O1N NO1 O 0 1 N N N 3.490 6.018 3.637 4.341 -2.511 -0.710 NO1 AVW 5 AVW C2A AC2 C 0 1 Y N N 9.687 2.484 7.326 -7.903 2.339 1.100 AC2 AVW 6 AVW O2A AO2 O 0 1 N N N 4.567 4.455 7.773 0.519 -2.368 -2.287 AO2 AVW 7 AVW O2N NO2 O 0 1 N N N 5.089 4.003 3.722 3.944 -1.045 -2.727 NO2 AVW 8 AVW O3 O3 O 0 1 N N N 3.362 4.489 5.550 2.234 -1.122 -0.732 O3 AVW 9 AVW N3A AN3 N 0 1 Y N N 9.170 2.144 6.111 -6.833 1.581 1.216 AN3 AVW 10 AVW C4A AC4 C 0 1 Y N N 9.975 1.761 5.054 -6.051 1.348 0.166 AC4 AVW 11 AVW C5A AC5 C 0 1 Y N N 11.361 1.742 5.270 -6.382 1.921 -1.073 AC5 AVW 12 AVW C6A AC6 C 0 1 Y N N 11.883 2.099 6.532 -7.535 2.723 -1.146 AC6 AVW 13 AVW N6A AN6 N 0 1 N N N 13.236 2.077 6.713 -7.910 3.315 -2.339 AN6 AVW 14 AVW N7A AN7 N 0 1 Y N N 11.935 1.350 4.114 -5.436 1.531 -1.959 AN7 AVW 15 AVW C8A AC8 C 0 1 Y N N 10.947 1.141 3.204 -4.566 0.772 -1.358 AC8 AVW 16 AVW N9A AN9 N 0 1 Y N N 9.736 1.375 3.760 -4.902 0.629 -0.045 AN9 AVW 17 AVW "C1'A" AC1* C 0 0 N N R 8.392 1.225 3.056 -4.170 -0.149 0.958 AC1* AVW 18 AVW "C1'N" NC1* C 0 0 N N N 0.880 2.985 0.080 7.164 2.022 2.437 NC1* AVW 19 AVW "C2'A" AC2* C 0 0 N N R 7.669 -0.130 3.330 -4.771 -1.571 1.091 AC2* AVW 20 AVW "O2'A" AO2* O 0 0 N N N 7.340 -0.924 2.162 -5.857 -1.582 2.020 AO2* AVW 21 AVW "C2'N" NC2* C 0 0 N N S -0.550 3.054 0.526 8.317 2.365 1.474 NC2* AVW 22 AVW "F2'N" NF2* F 0 0 N N N -1.295 3.363 -0.584 8.350 3.741 1.222 NF2* AVW 23 AVW "C3'A" AC3* C 0 0 N N S 6.371 0.187 4.056 -3.569 -2.381 1.636 AC3* AVW 24 AVW "O3'A" AO3* O 0 0 N N N 5.255 -0.409 3.357 -3.661 -2.518 3.056 AO3* AVW 25 AVW "C3'N" NC3* C 0 0 N N R -0.571 4.120 1.611 7.976 1.585 0.181 NC3* AVW 26 AVW "O3'N" NO3* O 0 0 N N N -1.276 5.213 1.208 8.246 2.376 -0.978 NO3* AVW 27 AVW "C4'A" AC4* C 0 0 N N R 6.315 1.720 4.106 -2.339 -1.536 1.254 AC4* AVW 28 AVW "O4'A" AO4* O 0 0 N N N 7.494 2.267 3.486 -2.816 -0.395 0.521 AO4* AVW 29 AVW "C4'N" NC4* C 0 0 N N R 0.854 4.601 1.830 6.454 1.340 0.341 NC4* AVW 30 AVW "O4'N" NO4* O 0 0 N N N 1.599 4.026 0.737 6.299 1.098 1.756 NO4* AVW 31 AVW "C5'A" AC5* C 0 0 N N N 6.332 2.248 5.534 -1.394 -2.360 0.377 AC5* AVW 32 AVW "O5'A" AO5* O 0 0 N N N 5.814 3.581 5.637 -0.204 -1.610 0.124 AO5* AVW 33 AVW "C5'N" NC5* C 0 0 N N N 1.316 3.952 3.127 6.017 0.116 -0.466 NC5* AVW 34 AVW "O5'N" NO5* O 0 0 N N N 2.727 3.652 3.143 4.597 -0.019 -0.396 NO5* AVW 35 AVW HC2 HC2 H 0 1 N N N 9.020 2.769 8.126 -8.517 2.509 1.972 HC2 AVW 36 AVW HAO2 HAO2 H 0 0 N N N 4.330 3.925 8.525 0.208 -1.555 -2.708 HAO2 AVW 37 AVW HNO2 HNO2 H 0 0 N N N 5.648 4.663 3.329 3.603 -0.209 -3.074 HNO2 AVW 38 AVW HAN6 HAN6 H 0 0 N N N 13.452 2.360 7.647 -7.377 3.178 -3.138 HAN6 AVW 39 AVW HANA HANA H 0 0 N N N 13.578 1.150 6.558 -8.708 3.866 -2.377 HANA AVW 40 AVW HC8 HC8 H 0 1 N N N 11.106 0.832 2.182 -3.705 0.322 -1.830 HC8 AVW 41 AVW "HC1'" HC1* H 0 0 N N N 8.627 1.279 1.983 -4.178 0.363 1.920 HC1* AVW 42 AVW HC1A HC1A H 0 0 N N N 1.309 2.007 0.345 7.562 1.559 3.341 HC1A AVW 43 AVW HC1B HC1B H 0 0 N N N 0.940 3.118 -1.010 6.612 2.926 2.693 HC1B AVW 44 AVW "HC2'" HC2* H 0 0 N N N 8.379 -0.739 3.909 -5.088 -1.952 0.120 HC2* AVW 45 AVW "HO2'" HO2* H 0 0 N N N 6.905 -1.724 2.434 -6.266 -2.450 2.137 HO2* AVW 46 AVW HC2A HC2A H 0 0 N N N -0.969 2.125 0.941 9.269 2.028 1.883 HC2A AVW 47 AVW "HC3'" HC3* H 0 0 N N N 6.322 -0.227 5.074 -3.522 -3.361 1.160 HC3* AVW 48 AVW "HO3'" HO3* H 0 0 N N N 4.448 -0.207 3.816 -4.449 -2.992 3.355 HO3* AVW 49 AVW HC3A HC3A H 0 0 N N N -1.023 3.683 2.514 8.520 0.641 0.141 HC3A AVW 50 AVW HO3A HO3A H 0 0 N N N -1.275 5.864 1.900 9.174 2.632 -1.072 HO3A AVW 51 AVW "HC4'" HC4* H 0 0 N N N 5.385 2.012 3.596 -1.819 -1.210 2.155 HC4* AVW 52 AVW HC4A HC4A H 0 0 N N N 0.967 5.694 1.878 5.889 2.221 0.036 HC4A AVW 53 AVW "HC5'" HC5* H 0 0 N N N 5.713 1.586 6.157 -1.137 -3.286 0.890 HC5* AVW 54 AVW HC5A HC5A H 0 0 N N N 7.372 2.251 5.891 -1.885 -2.592 -0.568 HC5A AVW 55 AVW HC5B HC5B H 0 0 N N N 1.102 4.645 3.954 6.319 0.240 -1.506 HC5B AVW 56 AVW HC5C HC5C H 0 0 N N N 0.763 3.010 3.257 6.488 -0.777 -0.055 HC5C AVW 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AVW O3 PA SING N N 1 AVW "O5'A" PA SING N N 2 AVW PA O1A DOUB N N 3 AVW PA O2A SING N N 4 AVW "O5'N" PN SING N N 5 AVW O1N PN DOUB N N 6 AVW O2N PN SING N N 7 AVW PN O3 SING N N 8 AVW C6A N1A DOUB Y N 9 AVW C2A N1A SING Y N 10 AVW N3A C2A DOUB Y N 11 AVW C2A HC2 SING N N 12 AVW O2A HAO2 SING N N 13 AVW O2N HNO2 SING N N 14 AVW C4A N3A SING Y N 15 AVW N9A C4A SING Y N 16 AVW C4A C5A DOUB Y N 17 AVW N7A C5A SING Y N 18 AVW C5A C6A SING Y N 19 AVW C6A N6A SING N N 20 AVW N6A HAN6 SING N N 21 AVW N6A HANA SING N N 22 AVW C8A N7A DOUB Y N 23 AVW C8A N9A SING Y N 24 AVW C8A HC8 SING N N 25 AVW "C1'A" N9A SING N N 26 AVW "C1'A" "C2'A" SING N N 27 AVW "C1'A" "O4'A" SING N N 28 AVW "C1'A" "HC1'" SING N N 29 AVW "C1'N" "C2'N" SING N N 30 AVW "C1'N" "O4'N" SING N N 31 AVW "C1'N" HC1A SING N N 32 AVW "C1'N" HC1B SING N N 33 AVW "O2'A" "C2'A" SING N N 34 AVW "C2'A" "C3'A" SING N N 35 AVW "C2'A" "HC2'" SING N N 36 AVW "O2'A" "HO2'" SING N N 37 AVW "F2'N" "C2'N" SING N N 38 AVW "C2'N" "C3'N" SING N N 39 AVW "C2'N" HC2A SING N N 40 AVW "O3'A" "C3'A" SING N N 41 AVW "C3'A" "C4'A" SING N N 42 AVW "C3'A" "HC3'" SING N N 43 AVW "O3'A" "HO3'" SING N N 44 AVW "O3'N" "C3'N" SING N N 45 AVW "C3'N" "C4'N" SING N N 46 AVW "C3'N" HC3A SING N N 47 AVW "O3'N" HO3A SING N N 48 AVW "O4'A" "C4'A" SING N N 49 AVW "C4'A" "C5'A" SING N N 50 AVW "C4'A" "HC4'" SING N N 51 AVW "O4'N" "C4'N" SING N N 52 AVW "C4'N" "C5'N" SING N N 53 AVW "C4'N" HC4A SING N N 54 AVW "C5'A" "O5'A" SING N N 55 AVW "C5'A" "HC5'" SING N N 56 AVW "C5'A" HC5A SING N N 57 AVW "C5'N" "O5'N" SING N N 58 AVW "C5'N" HC5B SING N N 59 AVW "C5'N" HC5C SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AVW SMILES ACDLabs 11.02 "FC1C(O)C(OC1)COP(=O)(O)OP(=O)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O" AVW SMILES_CANONICAL CACTVS 3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4OC[C@H](F)[C@@H]4O)[C@@H](O)[C@H]3O" AVW SMILES CACTVS 3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4OC[CH](F)[CH]4O)[CH](O)[CH]3O" AVW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H](CO4)F)O)O)O)N" AVW SMILES "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(CO4)F)O)O)O)N" AVW InChI InChI 1.03 "InChI=1S/C15H22FN5O12P2/c16-6-1-29-7(10(6)22)2-30-34(25,26)33-35(27,28)31-3-8-11(23)12(24)15(32-8)21-5-20-9-13(17)18-4-19-14(9)21/h4-8,10-12,15,22-24H,1-3H2,(H,25,26)(H,27,28)(H2,17,18,19)/t6-,7+,8+,10-,11+,12+,15+/m0/s1" AVW InChIKey InChI 1.03 GOCJJDZHXMDJEZ-AOOZFPJJSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AVW "SYSTEMATIC NAME" ACDLabs 11.02 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4S)-4-fluoro-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" AVW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4S)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AVW "Create component" 2009-07-14 PDBJ AVW "Modify aromatic_flag" 2011-06-04 RCSB AVW "Modify descriptor" 2011-06-04 RCSB AVW "Modify synonyms" 2021-03-13 RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 AVW "ribosyl-2-fluoro-deoxy-adenosine diphosphate ribose" PDB ? 2 AVW "ribo-2'F-ADPR" PDB ? ##