data_AYC
# 
_chem_comp.id                                    AYC 
_chem_comp.name                                  "ALAREMYCIN 2" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H13 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(5R)-5-ACETAMIDO-4-OXO-HEXANOIC ACID" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-07-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        187.193 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AYC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2WOQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AYC OAD  OAD  O 0 1 N N N N N N -21.720 23.384 17.529 3.650  -1.105 0.815  OAD  AYC 1  
AYC CAQ  CAQ  C 0 1 N N N N N N -22.637 23.380 18.355 3.540  0.036  0.418  CAQ  AYC 2  
AYC CAB  CAB  C 0 1 N N N N N N -22.751 24.475 19.368 4.702  0.988  0.532  CAB  AYC 3  
AYC NAP  NAP  N 0 1 N N N N N N -23.538 22.410 18.532 2.381  0.450  -0.130 NAP  AYC 4  
AYC CAR  CAR  C 0 1 N N R N N N -23.749 21.206 17.717 1.253  -0.478 -0.246 CAR  AYC 5  
AYC CAA  CAA  C 0 1 N N N N N N -23.444 19.911 18.434 1.397  -1.298 -1.530 CAA  AYC 6  
AYC CAU  CAU  C 0 1 N N N N N N -23.260 21.283 16.273 -0.036 0.302  -0.290 CAU  AYC 7  
AYC CAM  CAM  C 0 1 N N N N N N -23.949 22.277 15.387 -1.339 -0.378 0.042  CAM  AYC 8  
AYC CAL  CAL  C 0 1 N N N N N N -25.088 21.570 14.593 -2.485 0.629  -0.078 CAL  AYC 9  
AYC CAS  CAS  C 0 1 N N N N N N -25.684 22.495 13.536 -3.788 -0.051 0.255  CAS  AYC 10 
AYC OAG  OAG  O 0 1 N N N N N N -25.165 23.595 13.236 -4.936 0.643  0.215  OAG  AYC 11 
AYC OAE  OAE  O 0 1 N N N N N N -26.702 22.090 12.995 -3.800 -1.221 0.556  OAE  AYC 12 
AYC OXT  OXT  O 0 1 N Y N N N N -22.340 20.489 15.838 -0.025 1.471  -0.592 OXT  AYC 13 
AYC HAB1 HAB1 H 0 0 N N N N N N -22.779 24.040 20.378 5.313  0.927  -0.369 HAB1 AYC 14 
AYC HAB2 HAB2 H 0 0 N N N N N N -21.883 25.146 19.282 4.328  2.006  0.649  HAB2 AYC 15 
AYC HAB3 HAB3 H 0 0 N N N N N N -23.675 25.045 19.189 5.307  0.722  1.399  HAB3 AYC 16 
AYC HAP  HAP  H 0 1 N N N N N N -24.146 22.517 19.319 2.293  1.362  -0.448 HAP  AYC 17 
AYC HAR  HAR  H 0 1 N N N N N N -24.840 21.185 17.581 1.243  -1.148 0.613  HAR  AYC 18 
AYC HAA1 HAA1 H 0 0 N N N N N N -23.370 19.094 17.701 0.558  -1.988 -1.617 HAA1 AYC 19 
AYC HAA2 HAA2 H 0 0 N N N N N N -22.490 20.007 18.974 1.407  -0.627 -2.390 HAA2 AYC 20 
AYC HAA3 HAA3 H 0 0 N N N N N N -24.250 19.690 19.149 2.330  -1.861 -1.498 HAA3 AYC 21 
AYC HAM1 HAM1 H 0 0 N N N N N N -24.378 23.081 16.004 -1.506 -1.202 -0.651 HAM1 AYC 22 
AYC HAM2 HAM2 H 0 0 N N N N N N -23.221 22.702 14.680 -1.299 -0.763 1.061  HAM2 AYC 23 
AYC HAL1 HAL1 H 0 0 N N N N N N -24.675 20.680 14.095 -2.318 1.453  0.616  HAL1 AYC 24 
AYC HAL2 HAL2 H 0 0 N N N N N N -25.883 21.291 15.300 -2.525 1.014  -1.097 HAL2 AYC 25 
AYC HAG  HAG  H 0 1 N N N N N N -25.682 24.015 12.558 -5.747 0.164  0.437  HAG  AYC 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AYC OAD CAQ  DOUB N N 1  
AYC CAQ CAB  SING N N 2  
AYC CAQ NAP  SING N N 3  
AYC NAP CAR  SING N N 4  
AYC CAR CAA  SING N N 5  
AYC CAR CAU  SING N N 6  
AYC CAU CAM  SING N N 7  
AYC CAU OXT  DOUB N N 8  
AYC CAM CAL  SING N N 9  
AYC CAL CAS  SING N N 10 
AYC CAS OAG  SING N N 11 
AYC CAS OAE  DOUB N N 12 
AYC CAB HAB1 SING N N 13 
AYC CAB HAB2 SING N N 14 
AYC CAB HAB3 SING N N 15 
AYC NAP HAP  SING N N 16 
AYC CAR HAR  SING N N 17 
AYC CAA HAA1 SING N N 18 
AYC CAA HAA2 SING N N 19 
AYC CAA HAA3 SING N N 20 
AYC CAM HAM1 SING N N 21 
AYC CAM HAM2 SING N N 22 
AYC CAL HAL1 SING N N 23 
AYC CAL HAL2 SING N N 24 
AYC OAG HAG  SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AYC SMILES           ACDLabs              10.04 "O=C(C(NC(=O)C)C)CCC(=O)O"                                                                     
AYC SMILES_CANONICAL CACTVS               3.352 "C[C@@H](NC(C)=O)C(=O)CCC(O)=O"                                                                
AYC SMILES           CACTVS               3.352 "C[CH](NC(C)=O)C(=O)CCC(O)=O"                                                                  
AYC SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[C@H](C(=O)CCC(=O)O)NC(=O)C"                                                                 
AYC SMILES           "OpenEye OEToolkits" 1.6.1 "CC(C(=O)CCC(=O)O)NC(=O)C"                                                                     
AYC InChI            InChI                1.03  "InChI=1S/C8H13NO4/c1-5(9-6(2)10)7(11)3-4-8(12)13/h5H,3-4H2,1-2H3,(H,9,10)(H,12,13)/t5-/m1/s1" 
AYC InChIKey         InChI                1.03  QSRUAKBTZTXXLM-RXMQYKEDSA-N                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AYC "SYSTEMATIC NAME" ACDLabs              10.04 "(5R)-5-(acetylamino)-4-oxohexanoic acid" 
AYC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(5R)-5-acetamido-4-oxo-hexanoic acid"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AYC "Create component"  2009-07-27 EBI  
AYC "Modify descriptor" 2011-06-04 RCSB 
AYC "Modify synonyms"   2020-06-05 PDBE 
AYC "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      AYC 
_pdbx_chem_comp_synonyms.name         "(5R)-5-ACETAMIDO-4-OXO-HEXANOIC ACID" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            AYC 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAU 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#