data_AYU # _chem_comp.id AYU _chem_comp.name "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4S,5S,6R)-6-[(1S)-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N5 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-11 _chem_comp.pdbx_modified_date 2018-08-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 619.368 _chem_comp.one_letter_code ? _chem_comp.three_letter_code AYU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5Z2C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal AYU N01 N1 N 0 1 N N N 307.475 -56.552 547.310 -8.050 4.398 -1.342 N01 AYU 1 AYU C02 C1 C 0 1 Y N N 307.741 -55.515 548.211 -7.822 3.428 -0.382 C02 AYU 2 AYU N03 N2 N 0 1 Y N N 308.774 -55.667 549.110 -8.517 3.417 0.751 N03 AYU 3 AYU C04 C2 C 0 1 Y N N 309.042 -54.636 549.999 -8.307 2.495 1.673 C04 AYU 4 AYU N05 N3 N 0 1 Y N N 308.413 -53.452 550.131 -7.409 1.543 1.529 N05 AYU 5 AYU C06 C3 C 0 1 Y N N 307.372 -53.270 549.252 -6.666 1.474 0.429 C06 AYU 6 AYU C07 C4 C 0 1 Y N N 307.006 -54.261 548.284 -6.856 2.428 -0.585 C07 AYU 7 AYU N08 N4 N 0 1 Y N N 305.915 -53.748 547.557 -5.990 2.129 -1.582 N08 AYU 8 AYU C09 C5 C 0 1 Y N N 305.640 -52.527 548.051 -5.301 1.074 -1.256 C09 AYU 9 AYU N10 N5 N 0 1 Y N N 306.511 -52.159 549.122 -5.675 0.637 -0.020 N10 AYU 10 AYU C11 C6 C 0 1 N N R 306.487 -50.840 549.899 -5.131 -0.522 0.692 C11 AYU 11 AYU O12 O1 O 0 1 N N N 305.319 -50.785 550.644 -3.806 -0.832 0.208 O12 AYU 12 AYU C13 C7 C 0 1 N N R 304.719 -49.477 550.658 -3.577 -2.208 0.579 C13 AYU 13 AYU C14 C8 C 0 1 N N N 303.264 -49.432 550.044 -2.469 -2.816 -0.283 C14 AYU 14 AYU O15 O2 O 0 1 N N N 303.296 -50.038 548.840 -1.228 -2.174 0.015 O15 AYU 15 AYU P16 P1 P 0 1 N N N 302.289 -49.522 547.460 0.157 -2.564 -0.709 P16 AYU 16 AYU O17 O3 O 0 1 N N N 302.742 -50.345 546.313 -0.008 -2.461 -2.176 O17 AYU 17 AYU O18 O4 O 0 1 N N N 302.545 -48.068 547.431 0.560 -4.073 -0.319 O18 AYU 18 AYU O19 O5 O 0 1 N N N 300.706 -49.736 547.840 1.316 -1.556 -0.227 O19 AYU 19 AYU P20 P2 P 0 1 N N N 299.436 -49.765 546.800 2.750 -1.132 -0.826 P20 AYU 20 AYU O21 O6 O 0 1 N N N 298.119 -49.692 547.481 3.806 -2.322 -0.581 O21 AYU 21 AYU O22 O7 O 0 1 N N N 299.686 -48.801 545.705 2.622 -0.877 -2.278 O22 AYU 22 AYU O23 O8 O 0 1 N N N 299.408 -51.393 545.951 3.265 0.203 -0.089 O23 AYU 23 AYU C24 C9 C 0 1 N N S 299.029 -52.484 546.600 4.459 0.891 -0.469 C24 AYU 24 AYU O25 O9 O 0 1 N N N 300.022 -52.928 547.574 5.565 0.369 0.270 O25 AYU 25 AYU C26 C10 C 0 1 N N R 299.786 -54.096 548.302 6.819 0.972 -0.054 C26 AYU 26 AYU C27 C11 C 0 1 N N S 301.066 -54.473 549.251 7.928 0.319 0.773 C27 AYU 27 AYU O28 O10 O 0 1 N N N 302.062 -54.928 548.431 7.719 0.602 2.158 O28 AYU 28 AYU C29 C12 C 0 1 N N N 301.616 -53.178 550.037 7.905 -1.195 0.553 C29 AYU 29 AYU O30 O11 O 0 1 N N N 300.669 -52.763 550.976 9.010 -1.793 1.232 O30 AYU 30 AYU C31 C13 C 0 1 N N S 299.538 -55.339 547.315 6.761 2.469 0.262 C31 AYU 31 AYU O32 O12 O 0 1 N N N 299.175 -56.479 548.053 7.994 3.085 -0.114 O32 AYU 32 AYU C33 C14 C 0 1 N N S 298.373 -54.982 546.349 5.610 3.104 -0.524 C33 AYU 33 AYU O34 O13 O 0 1 N N N 298.183 -56.020 545.436 5.503 4.487 -0.180 O34 AYU 34 AYU C35 C15 C 0 1 N N S 298.745 -53.662 545.560 4.305 2.384 -0.169 C35 AYU 35 AYU O36 O14 O 0 1 N N N 299.855 -53.862 544.763 4.021 2.566 1.219 O36 AYU 36 AYU C37 C16 C 0 1 N N S 305.620 -48.547 549.842 -4.923 -2.918 0.310 C37 AYU 37 AYU O38 O15 O 0 1 N N N 306.458 -47.863 550.722 -5.179 -3.903 1.313 O38 AYU 38 AYU C39 C17 C 0 1 N N R 306.333 -49.589 548.960 -5.968 -1.783 0.385 C39 AYU 39 AYU O40 O16 O 0 1 N N N 307.562 -49.072 548.595 -6.902 -2.032 1.438 O40 AYU 40 AYU H1 H1 H 0 1 N N N 308.119 -57.301 547.464 -7.539 4.393 -2.167 H1 AYU 41 AYU H2 H2 H 0 1 N N N 306.541 -56.882 547.448 -8.722 5.081 -1.192 H2 AYU 42 AYU H3 H3 H 0 1 N N N 309.866 -54.806 550.677 -8.893 2.523 2.579 H3 AYU 43 AYU H4 H4 H 0 1 N N N 304.848 -51.894 547.679 -4.539 0.617 -1.870 H4 AYU 44 AYU H5 H5 H 0 1 N N N 307.392 -50.738 550.516 -5.108 -0.331 1.765 H5 AYU 45 AYU H6 H6 H 0 1 N N N 304.666 -49.100 551.690 -3.316 -2.278 1.635 H6 AYU 46 AYU H7 H7 H 0 1 N N N 302.942 -48.387 549.926 -2.387 -3.882 -0.071 H7 AYU 47 AYU H8 H8 H 0 1 N N N 302.563 -49.959 550.708 -2.709 -2.672 -1.337 H8 AYU 48 AYU H9 H9 H 0 1 N N N 302.996 -47.841 546.626 0.685 -4.214 0.629 H9 AYU 49 AYU H10 H10 H 0 1 N N N 297.599 -48.998 547.093 3.941 -2.544 0.350 H10 AYU 50 AYU H11 H11 H 0 1 N N N 298.084 -52.300 547.132 4.635 0.750 -1.536 H11 AYU 51 AYU H12 H12 H 0 1 N N N 298.904 -53.989 548.950 7.027 0.832 -1.115 H12 AYU 52 AYU H13 H13 H 0 1 N N N 300.748 -55.228 549.985 8.895 0.716 0.463 H13 AYU 53 AYU H14 H14 H 0 1 N N N 302.823 -55.156 548.953 6.876 0.276 2.503 H14 AYU 54 AYU H15 H15 H 0 1 N N N 302.554 -53.433 550.551 6.973 -1.605 0.944 H15 AYU 55 AYU H16 H16 H 0 1 N N N 301.801 -52.365 549.319 7.975 -1.408 -0.514 H16 AYU 56 AYU H17 H17 H 0 1 N N N 300.994 -52.000 551.439 9.059 -2.754 1.135 H17 AYU 57 AYU H18 H18 H 0 1 N N N 300.454 -55.513 546.731 6.595 2.609 1.331 H18 AYU 58 AYU H19 H19 H 0 1 N N N 299.879 -56.709 548.648 8.027 4.036 0.058 H19 AYU 59 AYU H20 H20 H 0 1 N N N 297.463 -54.796 546.938 5.801 3.008 -1.592 H20 AYU 60 AYU H21 H21 H 0 1 N N N 297.959 -56.816 545.903 4.793 4.953 -0.642 H21 AYU 61 AYU H22 H22 H 0 1 N N N 297.875 -53.373 544.952 3.490 2.793 -0.766 H22 AYU 62 AYU H23 H23 H 0 1 N N N 300.061 -53.059 544.299 3.207 2.135 1.514 H23 AYU 63 AYU H24 H24 H 0 1 N N N 305.014 -47.870 549.222 -4.922 -3.375 -0.680 H24 AYU 64 AYU H25 H25 H 0 1 N N N 305.947 -47.242 551.228 -6.012 -4.380 1.192 H25 AYU 65 AYU H26 H26 H 0 1 N N N 305.707 -49.847 548.093 -6.485 -1.676 -0.568 H26 AYU 66 AYU H27 H27 H 0 1 N N N 308.021 -49.700 548.049 -7.413 -2.846 1.326 H27 AYU 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AYU O36 C35 SING N N 1 AYU O34 C33 SING N N 2 AYU C35 C33 SING N N 3 AYU C35 C24 SING N N 4 AYU O22 P20 DOUB N N 5 AYU O23 C24 SING N N 6 AYU O23 P20 SING N N 7 AYU O17 P16 DOUB N N 8 AYU C33 C31 SING N N 9 AYU C24 O25 SING N N 10 AYU P20 O21 SING N N 11 AYU P20 O19 SING N N 12 AYU N01 C02 SING N N 13 AYU C31 O32 SING N N 14 AYU C31 C26 SING N N 15 AYU O18 P16 SING N N 16 AYU P16 O19 SING N N 17 AYU P16 O15 SING N N 18 AYU N08 C09 DOUB Y N 19 AYU N08 C07 SING Y N 20 AYU O25 C26 SING N N 21 AYU C09 N10 SING Y N 22 AYU C02 C07 DOUB Y N 23 AYU C02 N03 SING Y N 24 AYU C07 C06 SING Y N 25 AYU C26 C27 SING N N 26 AYU O28 C27 SING N N 27 AYU O40 C39 SING N N 28 AYU O15 C14 SING N N 29 AYU C39 C37 SING N N 30 AYU C39 C11 SING N N 31 AYU N03 C04 DOUB Y N 32 AYU N10 C06 SING Y N 33 AYU N10 C11 SING N N 34 AYU C27 C29 SING N N 35 AYU C06 N05 DOUB Y N 36 AYU C37 C13 SING N N 37 AYU C37 O38 SING N N 38 AYU C11 O12 SING N N 39 AYU C04 N05 SING Y N 40 AYU C29 O30 SING N N 41 AYU C14 C13 SING N N 42 AYU O12 C13 SING N N 43 AYU N01 H1 SING N N 44 AYU N01 H2 SING N N 45 AYU C04 H3 SING N N 46 AYU C09 H4 SING N N 47 AYU C11 H5 SING N N 48 AYU C13 H6 SING N N 49 AYU C14 H7 SING N N 50 AYU C14 H8 SING N N 51 AYU O18 H9 SING N N 52 AYU O21 H10 SING N N 53 AYU C24 H11 SING N N 54 AYU C26 H12 SING N N 55 AYU C27 H13 SING N N 56 AYU O28 H14 SING N N 57 AYU C29 H15 SING N N 58 AYU C29 H16 SING N N 59 AYU O30 H17 SING N N 60 AYU C31 H18 SING N N 61 AYU O32 H19 SING N N 62 AYU C33 H20 SING N N 63 AYU O34 H21 SING N N 64 AYU C35 H22 SING N N 65 AYU O36 H23 SING N N 66 AYU C37 H24 SING N N 67 AYU O38 H25 SING N N 68 AYU C39 H26 SING N N 69 AYU O40 H27 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor AYU InChI InChI 1.03 "InChI=1S/C17H27N5O16P2/c18-14-7-15(20-3-19-14)22(4-21-7)16-11(28)8(25)6(35-16)2-34-39(30,31)38-40(32,33)37-17-12(29)9(26)10(27)13(36-17)5(24)1-23/h3-6,8-13,16-17,23-29H,1-2H2,(H,30,31)(H,32,33)(H2,18,19,20)/t5-,6+,8+,9-,10-,11+,12-,13+,16+,17-/m0/s1" AYU InChIKey InChI 1.03 KMSFWBYFWSKGGR-DTBZDYEHSA-N AYU SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[C@@H]4O[C@H]([C@@H](O)CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O" AYU SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4O[CH]([CH](O)CO)[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O" AYU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)[C@H](CO)O)O)O)O)O)O)N" AYU SMILES "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4C(C(C(C(O4)C(CO)O)O)O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AYU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site AYU "Create component" 2018-01-11 RCSB AYU "Initial release" 2018-08-22 RCSB #