data_B04 # _chem_comp.id B04 _chem_comp.name "D-phenylalanyl-N-[(1-methylpyridinium-2-yl)methyl]-L-prolinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2011-06-22 _chem_comp.pdbx_modified_date 2012-06-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.465 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B04 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3SI4 _chem_comp.pdbx_subcomponent_list "DPN PRO NNZ" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B04 N4 N4 N 0 1 N N N 16.696 -15.569 23.292 3.294 -1.870 -0.897 N DPN 1 B04 C3 C3 C 0 1 N N R 17.955 -14.847 23.299 2.951 -0.581 -0.279 CA DPN 2 B04 C5 C5 C 0 1 N N N 17.707 -13.492 22.693 1.525 -0.620 0.205 C DPN 3 B04 O7 O7 O 0 1 N N N 16.781 -12.797 23.092 0.976 -1.686 0.391 O DPN 4 B04 C2 C2 C 0 1 N N N 18.440 -14.765 24.743 3.885 -0.320 0.905 CB DPN 5 B04 C1 C1 C 0 1 Y N N 19.839 -14.206 24.803 5.297 -0.159 0.405 CG DPN 6 B04 C8 C8 C 0 1 Y N N 20.913 -14.886 24.231 5.768 1.092 0.054 CD1 DPN 7 B04 C12 C12 C 0 1 Y N N 20.044 -13.002 25.460 6.124 -1.262 0.302 CD2 DPN 8 B04 C9 C9 C 0 1 Y N N 22.194 -14.348 24.312 7.064 1.240 -0.404 CE1 DPN 9 B04 C11 C11 C 0 1 Y N N 21.322 -12.466 25.534 7.418 -1.116 -0.161 CE2 DPN 10 B04 C10 C10 C 0 1 Y N N 22.397 -13.135 24.961 7.889 0.136 -0.512 CZ DPN 11 B04 N6 N6 N 0 1 N N N 18.514 -13.072 21.716 0.859 0.530 0.433 N PRO 12 B04 C13 C13 C 0 1 N N S 18.263 -11.766 21.106 -0.530 0.637 0.904 CA PRO 13 B04 C14 C14 C 0 1 N N N 16.866 -11.752 20.541 -1.456 -0.041 -0.073 C PRO 14 B04 O15 O15 O 0 1 N N N 16.459 -12.710 19.899 -1.008 -0.565 -1.070 O PRO 15 B04 C19 C19 C 0 1 N N N 19.293 -11.662 19.988 -0.868 2.140 0.993 CB PRO 16 B04 C20 C20 C 0 1 N N N 20.351 -12.694 20.315 0.160 2.786 0.027 CG PRO 17 B04 C21 C21 C 0 1 N N N 19.653 -13.779 21.124 1.404 1.888 0.256 CD PRO 18 B04 N16 N16 N 0 1 N N N 16.090 -10.693 20.780 -2.783 -0.063 0.162 N16 NNZ 19 B04 C17 C17 C 0 1 N N N 14.721 -10.533 20.295 -3.684 -0.722 -0.787 C17 NNZ 20 B04 C18 C18 C 0 1 Y N N 13.729 -10.407 21.431 -5.104 -0.606 -0.296 C18 NNZ 21 B04 C22 C22 C 0 1 Y N N 13.517 -9.173 22.041 -5.658 -1.638 0.438 C22 NNZ 22 B04 C23 C23 C 0 1 Y N N 12.609 -9.077 23.086 -6.965 -1.521 0.886 C23 NNZ 23 B04 C24 C24 C 0 1 Y N N 11.920 -10.216 23.487 -7.668 -0.367 0.578 C24 NNZ 24 B04 C25 C25 C 0 1 Y N N 12.169 -11.419 22.838 -7.048 0.623 -0.161 C25 NNZ 25 B04 N26 N26 N 1 1 Y N N 13.057 -11.494 21.838 -5.801 0.480 -0.566 N26 NNZ 26 B04 C27 C27 C 0 1 N N N 13.292 -12.783 21.179 -5.175 1.554 -1.341 C27 NNZ 27 B04 HN4 HN4 H 0 1 N N N 16.355 -15.637 22.354 3.197 -2.625 -0.235 H DPN 28 B04 HN4A HN4A H 0 0 N N N 16.836 -16.487 23.663 2.734 -2.036 -1.720 H2 DPN 29 B04 H3 H3 H 0 1 N N N 18.737 -15.347 22.709 3.064 0.215 -1.014 HA DPN 30 B04 H2 H2 H 0 1 N N N 18.437 -15.774 25.181 3.838 -1.160 1.597 HB2 DPN 31 B04 H2A H2A H 0 1 N N N 17.766 -14.108 25.312 3.575 0.591 1.417 HB3 DPN 32 B04 H8 H8 H 0 1 N N N 20.752 -15.827 23.727 5.124 1.955 0.139 HD1 DPN 33 B04 H12 H12 H 0 1 N N N 19.212 -12.483 25.913 5.757 -2.239 0.580 HD2 DPN 34 B04 H9 H9 H 0 1 N N N 23.029 -14.872 23.871 7.432 2.217 -0.679 HE1 DPN 35 B04 H11 H11 H 0 1 N N N 21.482 -11.525 26.039 8.062 -1.978 -0.245 HE2 DPN 36 B04 H10 H10 H 0 1 N N N 23.389 -12.713 25.020 8.901 0.251 -0.871 HZ DPN 37 B04 H13 H13 H 0 1 N N N 18.345 -10.930 21.816 -0.624 0.174 1.886 HA PRO 38 B04 H19 H19 H 0 1 N N N 18.832 -11.871 19.011 -1.887 2.326 0.652 HB2 PRO 39 B04 H19A H19A H 0 0 N N N 19.729 -10.653 19.951 -0.727 2.507 2.009 HB3 PRO 40 B04 H20 H20 H 0 1 N N N 20.778 -13.115 19.393 -0.184 2.727 -1.005 HG2 PRO 41 B04 H20A H20A H 0 0 N N N 21.165 -12.240 20.899 0.368 3.817 0.311 HG3 PRO 42 B04 H21 H21 H 0 1 N N N 20.315 -14.199 21.895 1.941 2.200 1.151 HD2 PRO 43 B04 H21A H21A H 0 0 N N N 19.326 -14.613 20.486 2.061 1.923 -0.613 HD3 PRO 44 B04 HN16 HN16 H 0 0 N N N 16.474 -9.953 21.333 -3.142 0.357 0.960 HN16 NNZ 45 B04 H17 H17 H 0 1 N N N 14.670 -9.622 19.681 -3.597 -0.243 -1.763 H17 NNZ 46 B04 H17A H17A H 0 0 N N N 14.456 -11.414 19.693 -3.414 -1.774 -0.874 H17A NNZ 47 B04 H22 H22 H 0 1 N N N 14.054 -8.299 21.704 -5.081 -2.523 0.660 H22 NNZ 48 B04 H23 H23 H 0 1 N N N 12.440 -8.132 23.580 -7.425 -2.312 1.462 H23 NNZ 49 B04 H24 H24 H 0 1 N N N 11.201 -10.166 24.292 -8.689 -0.243 0.910 H24 NNZ 50 B04 H25 H25 H 0 1 N N N 11.638 -12.308 23.145 -7.589 1.525 -0.406 H25 NNZ 51 B04 H27 H27 H 0 1 N N N 12.658 -13.553 21.642 -5.271 1.338 -2.405 H27 NNZ 52 B04 H27A H27A H 0 0 N N N 13.045 -12.699 20.110 -5.670 2.500 -1.117 H27A NNZ 53 B04 H27B H27B H 0 0 N N N 14.350 -13.064 21.290 -4.120 1.625 -1.078 H27B NNZ 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B04 C1 C2 SING N N 1 B04 C1 C8 DOUB Y N 2 B04 C1 C12 SING Y N 3 B04 C2 C3 SING N N 4 B04 C3 N4 SING N N 5 B04 C3 C5 SING N N 6 B04 C5 N6 SING N N 7 B04 C5 O7 DOUB N N 8 B04 N6 C13 SING N N 9 B04 N6 C21 SING N N 10 B04 C8 C9 SING Y N 11 B04 C9 C10 DOUB Y N 12 B04 C10 C11 SING Y N 13 B04 C11 C12 DOUB Y N 14 B04 C13 C14 SING N N 15 B04 C13 C19 SING N N 16 B04 C14 O15 DOUB N N 17 B04 C14 N16 SING N N 18 B04 N16 C17 SING N N 19 B04 C17 C18 SING N N 20 B04 C18 C22 DOUB Y N 21 B04 C18 N26 SING Y N 22 B04 C19 C20 SING N N 23 B04 C20 C21 SING N N 24 B04 C22 C23 SING Y N 25 B04 C23 C24 DOUB Y N 26 B04 C24 C25 SING Y N 27 B04 C25 N26 DOUB Y N 28 B04 N26 C27 SING N N 29 B04 C2 H2 SING N N 30 B04 C2 H2A SING N N 31 B04 C3 H3 SING N N 32 B04 N4 HN4 SING N N 33 B04 N4 HN4A SING N N 34 B04 C8 H8 SING N N 35 B04 C9 H9 SING N N 36 B04 C10 H10 SING N N 37 B04 C11 H11 SING N N 38 B04 C12 H12 SING N N 39 B04 C13 H13 SING N N 40 B04 N16 HN16 SING N N 41 B04 C17 H17 SING N N 42 B04 C17 H17A SING N N 43 B04 C19 H19 SING N N 44 B04 C19 H19A SING N N 45 B04 C20 H20 SING N N 46 B04 C20 H20A SING N N 47 B04 C21 H21 SING N N 48 B04 C21 H21A SING N N 49 B04 C22 H22 SING N N 50 B04 C23 H23 SING N N 51 B04 C24 H24 SING N N 52 B04 C25 H25 SING N N 53 B04 C27 H27 SING N N 54 B04 C27 H27A SING N N 55 B04 C27 H27B SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B04 SMILES ACDLabs 12.01 "O=C(NCc1[n+](cccc1)C)C3N(C(=O)C(N)Cc2ccccc2)CCC3" B04 InChI InChI 1.03 "InChI=1S/C21H26N4O2/c1-24-12-6-5-10-17(24)15-23-20(26)19-11-7-13-25(19)21(27)18(22)14-16-8-3-2-4-9-16/h2-6,8-10,12,18-19H,7,11,13-15,22H2,1H3/p+1/t18-,19+/m1/s1" B04 InChIKey InChI 1.03 GWFYERFSYVJQNW-MOPGFXCFSA-O B04 SMILES_CANONICAL CACTVS 3.370 "C[n+]1ccccc1CNC(=O)[C@@H]2CCCN2C(=O)[C@H](N)Cc3ccccc3" B04 SMILES CACTVS 3.370 "C[n+]1ccccc1CNC(=O)[CH]2CCCN2C(=O)[CH](N)Cc3ccccc3" B04 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[n+]1ccccc1CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc3ccccc3)N" B04 SMILES "OpenEye OEToolkits" 1.7.2 "C[n+]1ccccc1CNC(=O)C2CCCN2C(=O)C(Cc3ccccc3)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B04 "SYSTEMATIC NAME" ACDLabs 12.01 "D-phenylalanyl-N-[(1-methylpyridinium-2-yl)methyl]-L-prolinamide" B04 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]-N-[(1-methylpyridin-1-ium-2-yl)methyl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B04 "Create component" 2011-06-22 PDBJ #