data_B05 # _chem_comp.id B05 _chem_comp.name "N-[2-(benzyloxy)phenyl]-3-nitrobenzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H16 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.352 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B05 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DV3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B05 OAB O1 O 0 1 N N N N N N -18.063 19.116 -28.469 -6.392 -0.152 0.845 OAB B05 1 B05 OAC O2 O -1 1 N N N N N N -18.533 18.201 -26.313 -6.757 1.812 0.167 OAC B05 2 B05 CAZ C1 C 0 1 Y N N N N N -21.496 20.940 -25.814 -2.355 0.089 -0.195 CAZ B05 3 B05 CAK C2 C 0 1 Y N N N N N -24.244 26.411 -24.360 4.444 1.710 1.372 CAK B05 4 B05 CAJ C3 C 0 1 Y N N N N N -25.875 24.876 -25.185 4.704 1.704 -1.008 CAJ B05 5 B05 CAI C4 C 0 1 Y N N N N N -22.373 22.604 -19.718 2.441 -4.184 -0.035 CAI B05 6 B05 NBA N1 N 1 1 N N N N N N -18.809 19.091 -27.326 -5.989 0.884 0.347 NBA B05 7 B05 CAY C5 C 0 1 Y N N N N N -22.817 23.378 -21.929 2.109 -1.810 -0.077 CAY B05 8 B05 CAX C6 C 0 1 Y N N N N N -22.281 22.208 -22.434 0.738 -2.007 -0.227 CAX B05 9 B05 CAW C7 C 0 1 Y N N N N N -19.852 19.958 -27.193 -4.566 1.016 -0.037 CAW B05 10 B05 CAV C8 C 0 1 Y N N N N N -21.980 21.681 -26.878 -1.900 1.282 -0.758 CAV B05 11 B05 CAU C9 C 0 1 Y N N N N N -24.948 25.235 -24.228 4.403 1.037 0.165 CAU B05 12 B05 CAT C10 C 0 1 N N N N N N -22.019 20.963 -24.427 -1.419 -1.034 0.023 CAT B05 13 B05 CAQ C11 C 0 1 N N N N N N -24.688 24.357 -23.040 4.030 -0.422 0.128 CAQ B05 14 B05 CAP C12 C 0 1 Y N N N N N -20.447 20.081 -25.981 -3.697 -0.036 0.168 CAP B05 15 B05 CAO C13 C 0 1 Y N N N N N -22.861 23.567 -20.571 2.957 -2.902 0.018 CAO B05 16 B05 CAN C14 C 0 1 Y N N N N N -20.296 20.681 -28.256 -4.109 2.194 -0.602 CAN B05 17 B05 CAM C15 C 0 1 Y N N N N N -21.359 21.543 -28.094 -2.779 2.327 -0.959 CAM B05 18 B05 CAL C16 C 0 1 Y N N N N N -21.751 21.265 -21.603 0.229 -3.297 -0.285 CAL B05 19 B05 OAA O3 O 0 1 N N N N N N -22.217 19.918 -23.905 -1.819 -2.072 0.514 OAA B05 20 B05 NAR N2 N 0 1 N N N N N N -22.209 22.084 -23.783 -0.123 -0.907 -0.324 NAR B05 21 B05 CAH C17 C 0 1 Y N N N N N -21.818 21.462 -20.240 1.082 -4.380 -0.189 CAH B05 22 B05 OAS O4 O 0 1 N N N N N N -23.278 24.342 -22.777 2.615 -0.548 -0.025 OAS B05 23 B05 CAF C18 C 0 1 Y N N N N N -26.086 25.701 -26.267 5.047 3.042 -0.974 CAF B05 24 B05 CAE C19 C 0 1 Y N N N N N -25.379 26.876 -26.392 5.077 3.718 0.232 CAE B05 25 B05 CAG C20 C 0 1 Y N N N N N -24.454 27.242 -25.443 4.781 3.050 1.406 CAG B05 26 B05 H1 H1 H 0 1 N N N N N N -23.519 26.687 -23.608 4.209 1.189 2.289 H1 B05 27 B05 H2 H2 H 0 1 N N N N N N -26.431 23.955 -25.086 4.672 1.178 -1.951 H2 B05 28 B05 H3 H3 H 0 1 N N N N N N -22.426 22.745 -18.649 3.104 -5.034 0.039 H3 B05 29 B05 H4 H4 H 0 1 N N N N N N -22.821 22.348 -26.755 -0.862 1.388 -1.037 H4 B05 30 B05 H5 H5 H 0 1 N N N N N N -25.223 24.752 -22.164 4.531 -0.904 -0.711 H5 B05 31 B05 H6 H6 H 0 1 N N N N N N -25.036 23.335 -23.252 4.338 -0.900 1.059 H6 B05 32 B05 H7 H7 H 0 1 N N N N N N -20.090 19.498 -25.145 -4.055 -0.955 0.609 H7 B05 33 B05 H8 H8 H 0 1 N N N N N N -23.281 24.477 -20.169 4.020 -2.752 0.135 H8 B05 34 B05 H9 H9 H 0 1 N N N N N N -19.819 20.580 -29.220 -4.793 3.014 -0.761 H9 B05 35 B05 H10 H10 H 0 1 N N N N N N -21.709 22.119 -28.938 -2.429 3.249 -1.399 H10 B05 36 B05 H11 H11 H 0 1 N N N N N N -21.286 20.378 -22.007 -0.833 -3.453 -0.401 H11 B05 37 B05 H12 H12 H 0 1 N N N N N N -22.309 22.917 -24.328 0.213 -0.054 -0.641 H12 B05 38 B05 H13 H13 H 0 1 N N N N N N -21.428 20.707 -19.573 0.684 -5.384 -0.234 H13 B05 39 B05 H14 H14 H 0 1 N N N N N N -26.809 25.425 -27.021 5.282 3.563 -1.891 H14 B05 40 B05 H15 H15 H 0 1 N N N N N N -25.553 27.516 -27.244 5.344 4.764 0.258 H15 B05 41 B05 H16 H16 H 0 1 N N N N N N -23.901 28.164 -25.543 4.814 3.576 2.349 H16 B05 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B05 OAB NBA DOUB N N 1 B05 CAN CAM DOUB Y N 2 B05 CAN CAW SING Y N 3 B05 CAM CAV SING Y N 4 B05 NBA CAW SING N N 5 B05 NBA OAC SING N N 6 B05 CAW CAP DOUB Y N 7 B05 CAV CAZ DOUB Y N 8 B05 CAE CAF DOUB Y N 9 B05 CAE CAG SING Y N 10 B05 CAF CAJ SING Y N 11 B05 CAP CAZ SING Y N 12 B05 CAZ CAT SING N N 13 B05 CAG CAK DOUB Y N 14 B05 CAJ CAU DOUB Y N 15 B05 CAT OAA DOUB N N 16 B05 CAT NAR SING N N 17 B05 CAK CAU SING Y N 18 B05 CAU CAQ SING N N 19 B05 NAR CAX SING N N 20 B05 CAQ OAS SING N N 21 B05 OAS CAY SING N N 22 B05 CAX CAY DOUB Y N 23 B05 CAX CAL SING Y N 24 B05 CAY CAO SING Y N 25 B05 CAL CAH DOUB Y N 26 B05 CAO CAI DOUB Y N 27 B05 CAH CAI SING Y N 28 B05 CAK H1 SING N N 29 B05 CAJ H2 SING N N 30 B05 CAI H3 SING N N 31 B05 CAV H4 SING N N 32 B05 CAQ H5 SING N N 33 B05 CAQ H6 SING N N 34 B05 CAP H7 SING N N 35 B05 CAO H8 SING N N 36 B05 CAN H9 SING N N 37 B05 CAM H10 SING N N 38 B05 CAL H11 SING N N 39 B05 NAR H12 SING N N 40 B05 CAH H13 SING N N 41 B05 CAF H14 SING N N 42 B05 CAE H15 SING N N 43 B05 CAG H16 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B05 SMILES ACDLabs 12.01 "O=[N+]([O-])c3cc(C(=O)Nc1c(cccc1)OCc2ccccc2)ccc3" B05 InChI InChI 1.03 "InChI=1S/C20H16N2O4/c23-20(16-9-6-10-17(13-16)22(24)25)21-18-11-4-5-12-19(18)26-14-15-7-2-1-3-8-15/h1-13H,14H2,(H,21,23)" B05 InChIKey InChI 1.03 LWRSEQLBQHKFTL-UHFFFAOYSA-N B05 SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)c1cccc(c1)C(=O)Nc2ccccc2OCc3ccccc3" B05 SMILES CACTVS 3.385 "[O-][N+](=O)c1cccc(c1)C(=O)Nc2ccccc2OCc3ccccc3" B05 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)COc2ccccc2NC(=O)c3cccc(c3)[N+](=O)[O-]" B05 SMILES "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)COc2ccccc2NC(=O)c3cccc(c3)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B05 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-(benzyloxy)phenyl]-3-nitrobenzamide" B05 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "3-nitro-N-(2-phenylmethoxyphenyl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B05 "Create component" 2015-09-29 PDBJ B05 "Initial release" 2016-09-21 RCSB B05 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id B05 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAV _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #