data_B0D # _chem_comp.id B0D _chem_comp.name "(2R,3S,4R,5R,6R)-2,6-difluoro-2-(hydroxymethyl)tetrahydro-2H-pyran-3,4,5-triol" _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 F2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-08-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 200.137 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B0D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3IJ8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B0D F1 F1 F 0 1 N N N 2.957 -0.207 55.116 -2.430 -1.712 -0.130 F1 B0D 1 B0D F2 F2 F 0 1 N N N 5.331 2.970 56.709 1.156 -0.655 1.451 F2 B0D 2 B0D C1 CX1 C 0 1 N N R 3.670 0.697 54.317 -1.395 -0.895 0.339 C1 B0D 3 B0D C2 CX2 C 0 1 N N R 4.957 0.050 53.712 -1.744 0.572 0.075 C2 B0D 4 B0D O2 OX2 O 0 1 N N N 4.627 -1.150 53.022 -1.967 0.767 -1.322 O2 B0D 5 B0D C3 CX3 C 0 1 N N R 6.014 -0.213 54.830 -0.581 1.457 0.536 C3 B0D 6 B0D O3 OX3 O 0 1 N N N 7.209 -0.800 54.269 -0.399 1.311 1.946 O3 B0D 7 B0D C4 CX4 C 0 1 N N S 6.351 1.130 55.531 0.695 1.023 -0.192 C4 B0D 8 B0D O4 OX4 O 0 1 N N N 7.344 0.942 56.571 0.536 1.229 -1.597 O4 B0D 9 B0D C5 CX5 C 0 1 N N R 5.060 1.763 56.133 0.950 -0.462 0.081 C5 B0D 10 B0D O5 OX5 O 0 1 N N N 4.046 1.916 55.063 -0.183 -1.224 -0.342 O5 B0D 11 B0D C6 CX6 C 0 1 N N N 4.517 0.878 57.307 2.190 -0.917 -0.691 C6 B0D 12 B0D O6 OX6 O 0 1 N N N 3.219 1.359 57.709 3.321 -0.154 -0.268 O6 B0D 13 B0D H1 HX1 H 0 1 N N N 2.991 0.976 53.497 -1.265 -1.051 1.410 H1 B0D 14 B0D H2 HX2 H 0 1 N N N 5.400 0.750 52.988 -2.645 0.837 0.628 H2 B0D 15 B0D HO2 HOX2 H 0 1 N Y N 5.416 -1.534 52.659 -2.688 0.233 -1.684 HO2 B0D 16 B0D H3 HX3 H 0 1 N N N 5.601 -0.919 55.565 -0.800 2.498 0.302 H3 B0D 17 B0D HO3 HOX3 H 0 1 N Y N 7.842 -0.954 54.961 -1.173 1.562 2.470 HO3 B0D 18 B0D H4 HX4 H 0 1 N N N 6.769 1.812 54.776 1.538 1.611 0.169 H4 B0D 19 B0D HO4 HOX4 H 0 1 N Y N 7.533 1.777 56.984 0.366 2.149 -1.843 HO4 B0D 20 B0D H61 HX6 H 0 1 N N N 4.434 -0.166 56.971 2.371 -1.974 -0.497 H61 B0D 21 B0D H62 HX6A H 0 1 N N N 5.210 0.934 58.160 2.028 -0.767 -1.759 H62 B0D 22 B0D HO6 HOX6 H 0 1 N Y N 2.889 0.823 58.421 4.145 -0.390 -0.717 HO6 B0D 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B0D F1 C1 SING N N 1 B0D F2 C5 SING N N 2 B0D C1 C2 SING N N 3 B0D C1 O5 SING N N 4 B0D C2 O2 SING N N 5 B0D C2 C3 SING N N 6 B0D C3 O3 SING N N 7 B0D C3 C4 SING N N 8 B0D C4 O4 SING N N 9 B0D C4 C5 SING N N 10 B0D C5 O5 SING N N 11 B0D C5 C6 SING N N 12 B0D C6 O6 SING N N 13 B0D C1 H1 SING N N 14 B0D C2 H2 SING N N 15 B0D O2 HO2 SING N N 16 B0D C3 H3 SING N N 17 B0D O3 HO3 SING N N 18 B0D C4 H4 SING N N 19 B0D O4 HO4 SING N N 20 B0D C6 H61 SING N N 21 B0D C6 H62 SING N N 22 B0D O6 HO6 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B0D SMILES ACDLabs 11.02 "FC1OC(F)(C(O)C(O)C1O)CO" B0D SMILES_CANONICAL CACTVS 3.352 "OC[C@]1(F)O[C@H](F)[C@H](O)[C@@H](O)[C@@H]1O" B0D SMILES CACTVS 3.352 "OC[C]1(F)O[CH](F)[CH](O)[CH](O)[CH]1O" B0D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@]1([C@H]([C@@H]([C@H]([C@H](O1)F)O)O)O)F)O" B0D SMILES "OpenEye OEToolkits" 1.7.0 "C(C1(C(C(C(C(O1)F)O)O)O)F)O" B0D InChI InChI 1.03 "InChI=1S/C6H10F2O5/c7-5-3(11)2(10)4(12)6(8,1-9)13-5/h2-5,9-12H,1H2/t2-,3-,4+,5+,6+/m1/s1" B0D InChIKey InChI 1.03 MGHYRMVVRYCAON-PQMKYFCFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B0D "SYSTEMATIC NAME" ACDLabs 11.02 "(2R,3S,4R,5R,6R)-2,6-difluoro-2-(hydroxymethyl)tetrahydro-2H-pyran-3,4,5-triol (non-preferred name)" B0D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R,3S,4R,5R,6R)-2,6-difluoro-2-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support B0D "CARBOHYDRATE ISOMER" L PDB ? B0D "CARBOHYDRATE RING" pyranose PDB ? B0D "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B0D "Create component" 2009-08-18 RCSB B0D "Modify descriptor" 2011-06-04 RCSB B0D "Other modification" 2020-07-03 RCSB B0D "Modify linking type" 2020-07-17 RCSB B0D "Modify atom id" 2020-07-17 RCSB B0D "Modify component atom id" 2020-07-17 RCSB B0D "Modify leaving atom flag" 2020-07-17 RCSB ##