data_B1S
#
_chem_comp.id B1S
_chem_comp.name "(1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H31 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-07-31
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 485.551
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B1S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5WKJ
_chem_comp.pdbx_subcomponent_list "PHQ LEU B1Y"
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B1S C7 C1 C 0 1 N N N N N N -22.360 -7.435 2.998 5.205 0.363 0.822 C7 B1S 1
B1S O8 O1 O 0 1 N N N N N N -22.556 -6.280 2.205 3.975 0.472 0.058 O8 B1S 2
B1S C9 C2 C 0 1 N N N N N N -21.573 -5.277 2.381 2.828 0.566 0.755 C9 B1S 3
B1S O10 O2 O 0 1 N N N N N N -20.763 -5.324 3.257 2.852 0.557 1.970 O10 B1S 4
B1S C1 C3 C 0 1 Y N N N N N -23.255 -7.269 4.238 6.376 0.268 -0.120 C1 B1S 5
B1S C2 C4 C 0 1 Y N N N N N -23.941 -6.079 4.428 7.016 1.418 -0.546 C2 B1S 6
B1S C3 C5 C 0 1 Y N N N N N -24.760 -5.921 5.533 8.090 1.331 -1.411 C3 B1S 7
B1S C4 C6 C 0 1 Y N N N N N -24.901 -6.957 6.435 8.526 0.095 -1.850 C4 B1S 8
B1S C5 C7 C 0 1 Y N N N N N -24.223 -8.147 6.246 7.887 -1.054 -1.424 C5 B1S 9
B1S C6 C8 C 0 1 Y N N N N N -23.393 -8.306 5.147 6.816 -0.968 -0.555 C6 B1S 10
B1S N11 N1 N 0 1 N N N N N N -21.560 -4.160 1.448 1.651 0.670 0.106 N11 B1S 11
B1S C12 C9 C 0 1 N N S N N N -20.938 -2.921 1.841 0.395 0.662 0.860 C12 B1S 12
B1S C17 C10 C 0 1 N N N N N N -21.523 -2.464 3.168 -0.707 0.110 -0.007 C17 B1S 13
B1S O18 O3 O 0 1 N N N N N N -22.658 -2.617 3.437 -0.535 -0.017 -1.200 O18 B1S 14
B1S C13 C11 C 0 1 N N N N N N -21.182 -1.877 0.763 0.045 2.090 1.283 C13 B1S 15
B1S C14 C12 C 0 1 N N N N N N -20.641 -2.335 -0.593 -1.179 2.064 2.201 C14 B1S 16
B1S C15 C13 C 0 1 N N N N N N -21.022 -1.358 -1.713 -0.819 1.361 3.511 C15 B1S 17
B1S C16 C14 C 0 1 N N N N N N -19.126 -2.554 -0.518 -1.625 3.497 2.497 C16 B1S 18
B1S N19 N2 N 0 1 N N N N N N -20.612 -1.821 4.093 -1.885 -0.244 0.545 N19 B1S 19
B1S C20 C15 C 0 1 N N S N N N -21.061 -1.361 5.390 -2.919 -0.877 -0.278 C20 B1S 20
B1S C21 C16 C 0 1 N N R N N N -20.733 0.120 5.465 -2.365 -2.163 -0.893 C21 B1S 21
B1S O22 O4 O 0 1 N N N N N N -21.395 0.804 4.433 -3.361 -2.760 -1.725 O22 B1S 22
B1S C24 C17 C 0 1 N N N N N N -20.322 -2.206 6.446 -3.340 0.082 -1.393 C24 B1S 23
B1S C25 C18 C 0 1 N N S N N N -20.856 -3.651 6.574 -3.967 1.336 -0.779 C25 B1S 24
B1S C26 C19 C 0 1 N N N N N N -22.352 -3.621 6.949 -5.289 0.983 -0.060 C26 B1S 25
B1S C27 C20 C 0 1 N N N N N N -22.541 -4.598 7.898 -6.155 2.225 -0.367 C27 B1S 26
B1S N28 N3 N 0 1 N N N N N N -21.113 -4.949 8.493 -5.611 2.784 -1.610 N28 B1S 27
B1S C29 C21 C 0 1 N N N N N N -20.156 -4.399 7.697 -4.381 2.306 -1.863 C29 B1S 28
B1S O30 O5 O 0 1 N N N N N N -18.987 -4.495 7.872 -3.701 2.609 -2.821 O30 B1S 29
B1S H1 H1 H 0 1 N N N N N N -22.651 -8.335 2.437 5.318 1.242 1.456 H1 B1S 30
B1S H2 H2 H 0 1 N N N N N N -21.305 -7.515 3.299 5.167 -0.531 1.445 H2 B1S 31
B1S H3 H3 H 0 1 N N N N N N -23.836 -5.275 3.714 6.675 2.384 -0.203 H3 B1S 32
B1S H4 H4 H 0 1 N N N N N N -25.287 -4.991 5.689 8.589 2.229 -1.744 H4 B1S 33
B1S H5 H5 H 0 1 N N N N N N -25.545 -6.837 7.294 9.366 0.028 -2.526 H5 B1S 34
B1S H6 H6 H 0 1 N N N N N N -24.340 -8.953 6.955 8.228 -2.020 -1.768 H6 B1S 35
B1S H7 H7 H 0 1 N N N N N N -22.857 -9.232 5.000 6.319 -1.866 -0.220 H7 B1S 36
B1S H8 H8 H 0 1 N N N N N N -21.978 -4.251 0.544 1.636 0.750 -0.861 H8 B1S 37
B1S H9 H9 H 0 1 N N N N N N -19.854 -3.065 1.960 0.508 0.038 1.746 H9 B1S 38
B1S H10 H10 H 0 1 N N N N N N -20.680 -0.942 1.051 0.889 2.529 1.815 H10 B1S 39
B1S H11 H11 H 0 1 N N N N N N -22.264 -1.700 0.675 -0.177 2.687 0.398 H11 B1S 40
B1S H12 H12 H 0 1 N N N N N N -21.106 -3.304 -0.826 -1.990 1.526 1.710 H12 B1S 41
B1S H13 H13 H 0 1 N N N N N N -22.114 -1.229 -1.732 -0.437 0.363 3.295 H13 B1S 42
B1S H14 H14 H 0 1 N N N N N N -20.542 -0.386 -1.530 -0.056 1.936 4.035 H14 B1S 43
B1S H15 H15 H 0 1 N N N N N N -20.683 -1.759 -2.680 -1.708 1.282 4.137 H15 B1S 44
B1S H16 H16 H 0 1 N N N N N N -18.897 -3.258 0.295 -1.881 3.999 1.563 H16 B1S 45
B1S H17 H17 H 0 1 N N N N N N -18.768 -2.967 -1.473 -2.497 3.479 3.151 H17 B1S 46
B1S H18 H18 H 0 1 N N N N N N -18.626 -1.594 -0.323 -0.814 4.036 2.987 H18 B1S 47
B1S H19 H19 H 0 1 N N N N N N -19.656 -1.693 3.831 -2.048 -0.080 1.487 H19 B1S 48
B1S H20 H20 H 0 1 N N N N N N -22.146 -1.506 5.500 -3.783 -1.114 0.343 H20 B1S 49
B1S H21 H21 H 0 1 N N N N N N -20.514 0.584 6.438 -1.484 -1.930 -1.491 H21 B1S 50
B1S H23 H23 H 0 1 N N N N N N -21.188 1.730 4.482 -3.653 -2.198 -2.455 H23 B1S 51
B1S H24 H24 H 0 1 N N N N N N -19.258 -2.253 6.170 -2.466 0.363 -1.980 H24 B1S 52
B1S H25 H25 H 0 1 N N N N N N -20.426 -1.710 7.422 -4.069 -0.409 -2.038 H25 B1S 53
B1S H26 H26 H 0 1 N N N N N N -20.720 -4.184 5.621 -3.270 1.809 -0.086 H26 B1S 54
B1S H27 H27 H 0 1 N N N N N N -22.620 -2.636 7.360 -5.735 0.083 -0.482 H27 B1S 55
B1S H28 H28 H 0 1 N N N N N N -22.969 -3.829 6.063 -5.133 0.872 1.013 H28 B1S 56
B1S H29 H29 H 0 1 N N N N N N -23.202 -4.227 8.695 -7.196 1.933 -0.508 H29 B1S 57
B1S H30 H30 H 0 1 N N N N N N -22.988 -5.491 7.437 -6.073 2.951 0.441 H30 B1S 58
B1S H31 H31 H 0 1 N N N N N N -20.944 -5.487 9.319 -6.080 3.417 -2.176 H31 B1S 59
B1S S1 S1 S 0 1 N N N N N N ? ? ? -1.910 -3.319 0.429 S1 B1S 60
B1S O1 O6 O 0 1 N N N N N N ? ? ? -3.024 -3.575 1.273 O1 B1S 61
B1S O3 O7 O 0 1 N N N N N N ? ? ? -1.121 -4.382 -0.087 O3 B1S 62
B1S O2 O8 O 0 1 N N N N N N ? ? ? -0.948 -2.531 1.308 O2 B1S 63
B1S H22 H22 H 0 1 N N N N N N ? ? ? -0.614 -3.026 2.068 H22 B1S 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B1S C15 C14 SING N N 1
B1S C14 C16 SING N N 2
B1S C14 C13 SING N N 3
B1S C13 C12 SING N N 4
B1S N11 C12 SING N N 5
B1S N11 C9 SING N N 6
B1S C12 C17 SING N N 7
B1S O8 C9 SING N N 8
B1S O8 C7 SING N N 9
B1S C9 O10 DOUB N N 10
B1S C7 C1 SING N N 11
B1S C17 O18 DOUB N N 12
B1S C17 N19 SING N N 13
B1S N19 C20 SING N N 14
B1S C1 C2 DOUB Y N 15
B1S C1 C6 SING Y N 16
B1S C2 C3 SING Y N 17
B1S O22 C21 SING N N 18
B1S C6 C5 DOUB Y N 19
B1S C20 C21 SING N N 20
B1S C20 C24 SING N N 21
B1S C3 C4 DOUB Y N 22
B1S C5 C4 SING Y N 23
B1S C24 C25 SING N N 24
B1S C25 C26 SING N N 25
B1S C25 C29 SING N N 26
B1S C26 C27 SING N N 27
B1S C29 O30 DOUB N N 28
B1S C29 N28 SING N N 29
B1S C27 N28 SING N N 30
B1S C7 H1 SING N N 31
B1S C7 H2 SING N N 32
B1S C2 H3 SING N N 33
B1S C3 H4 SING N N 34
B1S C4 H5 SING N N 35
B1S C5 H6 SING N N 36
B1S C6 H7 SING N N 37
B1S N11 H8 SING N N 38
B1S C12 H9 SING N N 39
B1S C13 H10 SING N N 40
B1S C13 H11 SING N N 41
B1S C14 H12 SING N N 42
B1S C15 H13 SING N N 43
B1S C15 H14 SING N N 44
B1S C15 H15 SING N N 45
B1S C16 H16 SING N N 46
B1S C16 H17 SING N N 47
B1S C16 H18 SING N N 48
B1S N19 H19 SING N N 49
B1S C20 H20 SING N N 50
B1S C21 H21 SING N N 51
B1S O22 H23 SING N N 52
B1S C24 H24 SING N N 53
B1S C24 H25 SING N N 54
B1S C25 H26 SING N N 55
B1S C26 H27 SING N N 56
B1S C26 H28 SING N N 57
B1S C27 H29 SING N N 58
B1S C27 H30 SING N N 59
B1S N28 H31 SING N N 60
B1S C21 S1 SING N N 61
B1S S1 O1 DOUB N N 62
B1S S1 O3 DOUB N N 63
B1S S1 O2 SING N N 64
B1S O2 H22 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B1S SMILES ACDLabs 12.01 "C(c1ccccc1)OC(=O)NC(C(=O)NC(C(S(=O)(=O)O)O)CC2CCNC2=O)CC(C)C"
B1S InChI InChI 1.03 "InChI=1S/C21H31N3O8S/c1-13(2)10-16(24-21(28)32-12-14-6-4-3-5-7-14)19(26)23-17(20(27)33(29,30)31)11-15-8-9-22-18(15)25/h3-7,13,15-17,20,27H,8-12H2,1-2H3,(H,22,25)(H,23,26)(H,24,28)(H,29,30,31)/t15-,16-,17-,20+/m0/s1"
B1S InChIKey InChI 1.03 BSPZFJDYQHDZNR-OGNFBWPZSA-N
B1S SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"
B1S SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"
B1S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2"
B1S SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B1S "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
B1S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[[(2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B1S "Create component" 2017-07-31 RCSB
B1S "Initial release" 2018-04-04 RCSB
B1S "Other modification" 2018-04-13 EBI
B1S "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id B1S
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C21
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#