data_B2O
#
_chem_comp.id B2O
_chem_comp.name "4-[6-(2-naphthalen-1-ylethoxy)-2,3,4,5-tetrahydro-1H-3-benzazepin-3-ium-3-yl]butanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H30 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2021-12-07
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 404.521
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B2O
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7YXA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B2O C7 C1 C 0 1 Y N N 14.466 18.538 8.209 1.199 -3.023 -1.246 C7 B2O 1
B2O C8 C2 C 0 1 Y N N 13.836 19.267 7.211 -0.109 -2.908 -1.681 C8 B2O 2
B2O C9 C3 C 0 1 Y N N 12.457 19.214 7.065 -0.910 -1.886 -1.210 C9 B2O 3
B2O O1 O1 O 0 1 N N N 12.493 19.086 16.335 8.775 -0.058 0.626 O1 B2O 4
B2O C1 C4 C 0 1 N N N 13.295 16.855 15.989 7.268 1.612 -0.074 C1 B2O 5
B2O C5 C5 C 0 1 N N N 14.469 16.935 10.158 3.132 -2.237 0.148 C5 B2O 6
B2O C6 C6 C 0 1 Y N N 13.743 17.737 9.096 1.701 -2.111 -0.336 C6 B2O 7
B2O C4 C7 C 0 1 N N N 14.175 17.436 11.616 3.936 -1.066 -0.425 C4 B2O 8
B2O C3 C8 C 0 1 N N N 12.557 17.406 13.577 4.824 1.099 -0.033 C3 B2O 9
B2O C2 C9 C 0 1 N N N 13.695 17.126 14.533 6.221 0.546 0.252 C2 B2O 10
B2O N N1 N 1 1 N N N 12.874 16.944 12.174 3.813 0.127 0.405 N B2O 11
B2O C C10 C 0 1 N N N 12.517 17.905 16.763 8.645 1.068 0.207 C B2O 12
B2O O O2 O 0 1 N N N 11.944 17.504 17.808 9.726 1.833 -0.007 O B2O 13
B2O C10 C11 C 0 1 Y N N 11.725 18.414 7.936 -0.403 -0.971 -0.296 C10 B2O 14
B2O C11 C12 C 0 1 N N N 9.546 19.191 7.275 -2.527 0.097 -0.321 C11 B2O 15
B2O C12 C13 C 0 1 N N N 8.204 19.037 7.947 -3.249 1.288 0.313 C12 B2O 16
B2O C13 C14 C 0 1 Y N N 8.118 19.865 9.217 -4.663 1.352 -0.205 C13 B2O 17
B2O C14 C15 C 0 1 Y N N 8.121 19.254 10.436 -4.967 2.149 -1.265 C14 B2O 18
B2O C15 C16 C 0 1 Y N N 8.053 19.986 11.622 -6.268 2.221 -1.758 C15 B2O 19
B2O C16 C17 C 0 1 Y N N 7.995 21.332 11.605 -7.273 1.497 -1.194 C16 B2O 20
B2O C17 C18 C 0 1 Y N N 7.976 22.046 10.396 -6.997 0.662 -0.097 C17 B2O 21
B2O C18 C19 C 0 1 Y N N 7.888 23.441 10.340 -8.008 -0.100 0.512 C18 B2O 22
B2O C19 C20 C 0 1 Y N N 7.834 24.102 9.144 -7.704 -0.897 1.573 C19 B2O 23
B2O C20 C21 C 0 1 Y N N 7.881 23.389 7.957 -6.402 -0.969 2.066 C20 B2O 24
B2O C21 C22 C 0 1 Y N N 7.986 22.030 7.955 -5.398 -0.245 1.501 C21 B2O 25
B2O C22 C23 C 0 1 Y N N 8.033 21.286 9.164 -5.672 0.584 0.400 C22 B2O 26
B2O C23 C24 C 0 1 Y N N 12.350 17.697 8.970 0.911 -1.090 0.131 C23 B2O 27
B2O C24 C25 C 0 1 N N N 11.546 16.890 9.976 1.473 -0.099 1.130 C24 B2O 28
B2O C25 C26 C 0 1 N N N 11.660 17.346 11.389 2.511 0.768 0.410 C25 B2O 29
B2O O2 O3 O 0 1 N N N 10.388 18.159 7.775 -1.186 0.036 0.171 O2 B2O 30
B2O H10 H1 H 0 1 N N N 15.541 18.591 8.302 1.824 -3.825 -1.611 H10 B2O 31
B2O H11 H2 H 0 1 N N N 14.423 19.880 6.543 -0.505 -3.618 -2.392 H11 B2O 32
B2O H12 H3 H 0 1 N N N 11.962 19.782 6.291 -1.931 -1.798 -1.552 H12 B2O 33
B2O H1 H4 H 0 1 N N N 12.683 15.941 15.987 7.194 1.885 -1.127 H1 B2O 34
B2O H H5 H 0 1 N N N 14.225 16.672 16.547 7.093 2.494 0.543 H B2O 35
B2O H9 H6 H 0 1 N N N 14.155 15.884 10.079 3.145 -2.195 1.237 H9 B2O 36
B2O H8 H7 H 0 1 N N N 15.551 17.009 9.974 3.564 -3.180 -0.189 H8 B2O 37
B2O H7 H8 H 0 1 N N N 14.987 17.089 12.272 4.987 -1.349 -0.483 H7 B2O 38
B2O H6 H9 H 0 1 N N N 14.155 18.536 11.607 3.572 -0.838 -1.427 H6 B2O 39
B2O H5 H10 H 0 1 N N N 12.365 18.489 13.560 4.686 2.035 0.507 H5 B2O 40
B2O H4 H11 H 0 1 N N N 11.658 16.880 13.930 4.715 1.278 -1.103 H4 B2O 41
B2O H3 H12 H 0 1 N N N 14.237 16.244 14.162 6.396 -0.336 -0.365 H3 B2O 42
B2O H2 H13 H 0 1 N N N 14.365 17.998 14.524 6.296 0.273 1.305 H2 B2O 43
B2O HN H14 H 0 1 N N N 12.909 15.945 12.187 4.017 -0.130 1.360 HN B2O 44
B2O H28 H15 H 0 1 N N N 11.492 18.231 18.221 10.588 1.440 0.188 H28 B2O 45
B2O H14 H16 H 0 1 N N N 9.975 20.176 7.512 -3.050 -0.824 -0.064 H14 B2O 46
B2O H13 H17 H 0 1 N N N 9.435 19.092 6.185 -2.512 0.216 -1.404 H13 B2O 47
B2O H16 H18 H 0 1 N N N 7.417 19.366 7.252 -3.264 1.169 1.396 H16 B2O 48
B2O H15 H19 H 0 1 N N N 8.051 17.978 8.200 -2.726 2.209 0.056 H15 B2O 49
B2O H17 H20 H 0 1 N N N 8.177 18.177 10.485 -4.188 2.734 -1.732 H17 B2O 50
B2O H18 H21 H 0 1 N N N 8.047 19.466 12.568 -6.483 2.862 -2.601 H18 B2O 51
B2O H19 H22 H 0 1 N N N 7.962 21.872 12.540 -8.277 1.563 -1.587 H19 B2O 52
B2O H20 H23 H 0 1 N N N 7.862 24.007 11.259 -9.021 -0.054 0.141 H20 B2O 53
B2O H21 H24 H 0 1 N N N 7.755 25.179 9.125 -8.482 -1.482 2.039 H21 B2O 54
B2O H22 H25 H 0 1 N N N 7.834 23.919 7.017 -6.188 -1.609 2.909 H22 B2O 55
B2O H23 H26 H 0 1 N N N 8.035 21.506 7.012 -4.394 -0.311 1.894 H23 B2O 56
B2O H24 H27 H 0 1 N N N 10.486 16.943 9.686 0.671 0.531 1.514 H24 B2O 57
B2O H25 H28 H 0 1 N N N 11.888 15.846 9.926 1.948 -0.634 1.952 H25 B2O 58
B2O H27 H29 H 0 1 N N N 11.629 18.446 11.379 2.587 1.730 0.917 H27 B2O 59
B2O H26 H30 H 0 1 N N N 10.782 16.959 11.927 2.189 0.932 -0.619 H26 B2O 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B2O C9 C8 DOUB Y N 1
B2O C9 C10 SING Y N 2
B2O C8 C7 SING Y N 3
B2O C11 O2 SING N N 4
B2O C11 C12 SING N N 5
B2O O2 C10 SING N N 6
B2O C10 C23 DOUB Y N 7
B2O C12 C13 SING N N 8
B2O C21 C20 DOUB Y N 9
B2O C21 C22 SING Y N 10
B2O C20 C19 SING Y N 11
B2O C7 C6 DOUB Y N 12
B2O C23 C6 SING Y N 13
B2O C23 C24 SING N N 14
B2O C6 C5 SING N N 15
B2O C19 C18 DOUB Y N 16
B2O C22 C13 SING Y N 17
B2O C22 C17 DOUB Y N 18
B2O C13 C14 DOUB Y N 19
B2O C24 C25 SING N N 20
B2O C5 C4 SING N N 21
B2O C18 C17 SING Y N 22
B2O C17 C16 SING Y N 23
B2O C14 C15 SING Y N 24
B2O C25 N SING N N 25
B2O C16 C15 DOUB Y N 26
B2O C4 N SING N N 27
B2O N C3 SING N N 28
B2O C3 C2 SING N N 29
B2O C2 C1 SING N N 30
B2O C1 C SING N N 31
B2O O1 C DOUB N N 32
B2O C O SING N N 33
B2O C7 H10 SING N N 34
B2O C8 H11 SING N N 35
B2O C9 H12 SING N N 36
B2O C1 H1 SING N N 37
B2O C1 H SING N N 38
B2O C5 H9 SING N N 39
B2O C5 H8 SING N N 40
B2O C4 H7 SING N N 41
B2O C4 H6 SING N N 42
B2O C3 H5 SING N N 43
B2O C3 H4 SING N N 44
B2O C2 H3 SING N N 45
B2O C2 H2 SING N N 46
B2O N HN SING N N 47
B2O O H28 SING N N 48
B2O C11 H14 SING N N 49
B2O C11 H13 SING N N 50
B2O C12 H16 SING N N 51
B2O C12 H15 SING N N 52
B2O C14 H17 SING N N 53
B2O C15 H18 SING N N 54
B2O C16 H19 SING N N 55
B2O C18 H20 SING N N 56
B2O C19 H21 SING N N 57
B2O C20 H22 SING N N 58
B2O C21 H23 SING N N 59
B2O C24 H24 SING N N 60
B2O C24 H25 SING N N 61
B2O C25 H27 SING N N 62
B2O C25 H26 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B2O InChI InChI 1.06 "InChI=1S/C26H29NO3/c28-26(29)12-5-16-27-17-13-21-9-4-11-25(24(21)14-18-27)30-19-15-22-8-3-7-20-6-1-2-10-23(20)22/h1-4,6-11H,5,12-19H2,(H,28,29)/p+1"
B2O InChIKey InChI 1.06 XIMAYLMGLVYUOJ-UHFFFAOYSA-O
B2O SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCC[NH+]1CCc2cccc(OCCc3cccc4ccccc34)c2CC1"
B2O SMILES CACTVS 3.385 "OC(=O)CCC[NH+]1CCc2cccc(OCCc3cccc4ccccc34)c2CC1"
B2O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2CCOc3cccc4c3CC[NH+](CC4)CCCC(=O)O"
B2O SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2CCOc3cccc4c3CC[NH+](CC4)CCCC(=O)O"
#
_pdbx_chem_comp_identifier.comp_id B2O
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "4-[6-(2-naphthalen-1-ylethoxy)-2,3,4,5-tetrahydro-1~{H}-3-benzazepin-3-ium-3-yl]butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B2O "Create component" 2021-12-07 PDBE
B2O "Initial release" 2022-08-10 RCSB
B2O "Modify descriptor" 2022-08-22 RCSB
#