data_B3E # _chem_comp.id B3E _chem_comp.name "(3S)-3-AMINOHEXANEDIOIC ACID" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-02-28 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 161.156 _chem_comp.one_letter_code E _chem_comp.three_letter_code B3E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B3E N N N 0 1 N N N Y Y N -3.923 -5.219 3.478 1.125 -1.960 0.018 N B3E 1 B3E CA CB C 0 1 N N S Y N N -3.635 -6.488 4.152 0.951 -3.339 0.484 CB B3E 2 B3E CG CG C 0 1 N N N N N N -4.245 -7.630 3.355 -0.437 -3.867 0.064 CG B3E 3 B3E CD CD C 0 1 N N N N N N -5.158 -8.465 4.254 -1.615 -3.035 0.586 CD B3E 4 B3E CE CE C 0 1 N N N N N N -6.560 -8.661 3.678 -2.962 -3.617 0.219 CE B3E 5 B3E OF2 OF2 O 0 1 N N N N N N -6.699 -8.336 2.482 -3.144 -4.607 -0.476 OF2 B3E 6 B3E OF1 OF1 O 0 1 N N N N N N -7.497 -9.153 4.407 -3.978 -2.912 0.783 OF1 B3E 7 B3E CB CA C 0 1 N N N Y N N -2.148 -6.708 4.216 2.081 -4.205 -0.091 CA B3E 8 B3E C C C 0 1 N N N Y N Y -1.505 -6.023 5.372 2.014 -5.633 0.387 C B3E 9 B3E O O O 0 1 N N N Y N Y -1.810 -6.392 6.483 1.521 -5.989 1.448 O B3E 10 B3E OXT OXT O 0 1 N Y N Y N Y -0.614 -5.064 5.099 2.583 -6.478 -0.507 OXT B3E 11 B3E H H H 0 1 N N N Y Y N -3.989 -4.488 4.157 1.909 -1.451 0.356 H B3E 12 B3E H2 H2 H 0 1 N Y N Y Y N -3.188 -5.010 2.833 0.358 -1.528 -0.445 H2 B3E 13 B3E HA HB H 0 1 N N N Y N N -4.056 -6.454 5.168 1.021 -3.334 1.578 HB B3E 14 B3E HG2 HG2 H 0 1 N N N N N N -4.833 -7.218 2.521 -0.498 -3.917 -1.030 HG2 B3E 15 B3E HG3 HG3 H 0 1 N N N N N N -3.439 -8.269 2.964 -0.557 -4.897 0.426 HG3 B3E 16 B3E HD2 HD2 H 0 1 N N N N N N -4.699 -9.456 4.385 -1.554 -2.008 0.213 HD2 B3E 17 B3E HD3 HD3 H 0 1 N N N N N N -5.267 -7.922 5.204 -1.565 -3.007 1.681 HD3 B3E 18 B3E HOF1 HOF1 H 0 0 N N N N N N -8.293 -9.225 3.894 -4.877 -3.256 0.593 HOF1 B3E 19 B3E HB1 HA1 H 0 1 N N N Y N N -1.963 -7.788 4.309 2.048 -4.228 -1.188 HA1 B3E 20 B3E HB2 HA2 H 0 1 N N N Y N N -1.712 -6.286 3.298 3.064 -3.799 0.180 HA2 B3E 21 B3E HXT HXT H 0 1 N Y N Y N Y -0.260 -4.720 5.911 2.551 -7.410 -0.201 HXT B3E 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B3E N CA SING N N 1 B3E N H SING N N 2 B3E N H2 SING N N 3 B3E CA CG SING N N 4 B3E CA CB SING N N 5 B3E CA HA SING N N 6 B3E CG CD SING N N 7 B3E CG HG2 SING N N 8 B3E CG HG3 SING N N 9 B3E CD CE SING N N 10 B3E CD HD2 SING N N 11 B3E CD HD3 SING N N 12 B3E CE OF2 DOUB N N 13 B3E CE OF1 SING N N 14 B3E OF1 HOF1 SING N N 15 B3E CB C SING N N 16 B3E CB HB1 SING N N 17 B3E CB HB2 SING N N 18 B3E C OXT SING N N 19 B3E C O DOUB N N 20 B3E OXT HXT SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B3E SMILES ACDLabs 10.04 "O=C(O)CCC(N)CC(=O)O" B3E SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCC(O)=O)CC(O)=O" B3E SMILES CACTVS 3.341 "N[CH](CCC(O)=O)CC(O)=O" B3E SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC(=O)O)[C@@H](CC(=O)O)N" B3E SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(=O)O)C(CC(=O)O)N" B3E InChI InChI 1.03 "InChI=1S/C6H11NO4/c7-4(3-6(10)11)1-2-5(8)9/h4H,1-3,7H2,(H,8,9)(H,10,11)/t4-/m0/s1" B3E InChIKey InChI 1.03 XABCFXXGZPWJQP-BYPYZUCNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B3E "SYSTEMATIC NAME" ACDLabs 10.04 "(3S)-3-aminohexanedioic acid" B3E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3S)-3-aminohexanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B3E "Create component" 2007-02-28 RCSB B3E "Modify descriptor" 2011-06-04 RCSB B3E "Modify backbone" 2023-11-03 PDBE B3E "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id B3E _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type "Beta-amino acid" _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #