data_B5E # _chem_comp.id B5E _chem_comp.name "2-(1~{H}-benzimidazol-2-yl)-~{N}-[[4-(2-ethylphenyl)-3-(trifluoromethyl)phenyl]methyl]ethanamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 F3 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-15 _chem_comp.pdbx_modified_date 2018-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 423.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B5E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EHU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B5E F2 F1 F 0 1 N N N -150.921 194.328 312.130 -2.756 -2.984 -0.416 F2 B5E 1 B5E C24 C1 C 0 1 N N N -151.477 193.134 311.892 -3.606 -1.910 -0.132 C24 B5E 2 B5E F F2 F 0 1 N N N -150.654 192.180 312.323 -4.257 -1.509 -1.303 F B5E 3 B5E F1 F3 F 0 1 N N N -151.473 193.022 310.571 -4.554 -2.304 0.818 F1 B5E 4 B5E C23 C2 C 0 1 Y N N -152.853 193.025 312.487 -2.798 -0.760 0.412 C23 B5E 5 B5E C8 C3 C 0 1 Y N N -153.889 193.896 312.090 -3.410 0.466 0.664 C8 B5E 6 B5E C7 C4 C 0 1 Y N N -153.785 194.930 311.016 -4.859 0.643 0.397 C7 B5E 7 B5E C6 C5 C 0 1 Y N N -153.966 194.512 309.692 -5.801 0.048 1.232 C6 B5E 8 B5E C5 C6 C 0 1 Y N N -153.902 195.423 308.651 -7.148 0.221 0.982 C5 B5E 9 B5E C4 C7 C 0 1 Y N N -153.672 196.760 308.913 -7.562 0.984 -0.094 C4 B5E 10 B5E C3 C8 C 0 1 Y N N -153.493 197.192 310.215 -6.630 1.577 -0.927 C3 B5E 11 B5E C2 C9 C 0 1 Y N N -153.533 196.290 311.281 -5.281 1.411 -0.687 C2 B5E 12 B5E C1 C10 C 0 1 N N N -153.217 196.790 312.678 -4.267 2.063 -1.591 C1 B5E 13 B5E C C11 C 0 1 N N N -154.243 197.750 313.253 -3.845 1.074 -2.680 C B5E 14 B5E C22 C12 C 0 1 Y N N -153.078 192.099 313.507 -1.451 -0.922 0.668 C22 B5E 15 B5E C11 C13 C 0 1 Y N N -154.306 192.018 314.161 -0.708 0.132 1.168 C11 B5E 16 B5E C10 C14 C 0 1 Y N N -155.315 192.893 313.773 -1.310 1.353 1.416 C10 B5E 17 B5E C9 C15 C 0 1 Y N N -155.118 193.808 312.751 -2.657 1.524 1.168 C9 B5E 18 B5E C12 C16 C 0 1 N N N -154.557 190.997 315.247 0.762 -0.050 1.446 C12 B5E 19 B5E N N1 N 0 1 N N N -154.796 189.623 314.766 1.534 0.297 0.245 N B5E 20 B5E C13 C17 C 0 1 N N N -156.014 189.470 313.965 2.974 0.130 0.479 C13 B5E 21 B5E C14 C18 C 0 1 N N N -156.848 188.282 314.413 3.743 0.500 -0.791 C14 B5E 22 B5E C15 C19 C 0 1 Y N N -156.976 187.201 313.390 5.221 0.329 -0.551 C15 B5E 23 B5E N2 N2 N 0 1 Y N N -157.521 186.023 313.626 6.051 -0.436 -1.311 N2 B5E 24 B5E C21 C20 C 0 1 Y N N -157.415 185.323 312.422 7.317 -0.330 -0.770 C21 B5E 25 B5E C16 C21 C 0 1 Y N N -156.808 186.135 311.463 7.195 0.528 0.336 C16 B5E 26 B5E N1 N3 N 0 1 Y N N -156.529 187.328 312.114 5.891 0.897 0.409 N1 B5E 27 B5E C20 C22 C 0 1 Y N N -157.833 184.036 312.078 8.555 -0.866 -1.096 C20 B5E 28 B5E C19 C23 C 0 1 Y N N -157.668 183.605 310.764 9.658 -0.552 -0.331 C19 B5E 29 B5E C18 C24 C 0 1 Y N N -157.075 184.437 309.805 9.537 0.295 0.762 C18 B5E 30 B5E C17 C25 C 0 1 Y N N -156.626 185.707 310.149 8.327 0.833 1.097 C17 B5E 31 B5E H1 H1 H 0 1 N N N -154.157 193.470 309.481 -5.479 -0.549 2.073 H1 B5E 32 B5E H2 H2 H 0 1 N N N -154.032 195.088 307.633 -7.880 -0.241 1.629 H2 B5E 33 B5E H3 H3 H 0 1 N N N -153.632 197.469 308.100 -8.616 1.117 -0.286 H3 B5E 34 B5E H4 H4 H 0 1 N N N -153.320 198.240 310.410 -6.958 2.171 -1.767 H4 B5E 35 B5E H5 H5 H 0 1 N N N -153.149 195.919 313.347 -4.707 2.946 -2.053 H5 B5E 36 B5E H6 H6 H 0 1 N N N -152.245 197.305 312.647 -3.394 2.355 -1.007 H6 B5E 37 B5E H7 H7 H 0 1 N N N -153.933 198.058 314.262 -4.717 0.782 -3.263 H7 B5E 38 B5E H8 H8 H 0 1 N N N -154.318 198.637 312.606 -3.111 1.546 -3.334 H8 B5E 39 B5E H9 H9 H 0 1 N N N -155.222 197.251 313.307 -3.404 0.191 -2.217 H9 B5E 40 B5E H10 H10 H 0 1 N N N -152.282 191.429 313.796 -0.976 -1.873 0.477 H10 B5E 41 B5E H11 H11 H 0 1 N N N -156.269 192.859 314.277 -0.725 2.173 1.807 H11 B5E 42 B5E H12 H12 H 0 1 N N N -155.926 194.463 312.461 -3.126 2.477 1.365 H12 B5E 43 B5E H13 H13 H 0 1 N N N -153.678 190.979 315.909 1.059 0.600 2.269 H13 B5E 44 B5E H14 H14 H 0 1 N N N -155.440 191.317 315.819 0.955 -1.089 1.715 H14 B5E 45 B5E H15 H15 H 0 1 N N N -154.866 189.020 315.561 1.323 1.234 -0.062 H15 B5E 46 B5E H17 H17 H 0 1 N N N -155.730 189.327 312.912 3.287 0.781 1.295 H17 B5E 47 B5E H18 H18 H 0 1 N N N -156.619 190.384 314.061 3.182 -0.907 0.741 H18 B5E 48 B5E H19 H19 H 0 1 N N N -157.857 188.643 314.661 3.430 -0.151 -1.608 H19 B5E 49 B5E H20 H20 H 0 1 N N N -156.381 187.853 315.312 3.535 1.537 -1.053 H20 B5E 50 B5E H21 H21 H 0 1 N N N -157.923 185.701 314.483 5.799 -0.959 -2.088 H21 B5E 51 B5E H23 H23 H 0 1 N N N -158.276 183.386 312.818 8.654 -1.526 -1.946 H23 B5E 52 B5E H24 H24 H 0 1 N N N -158.001 182.617 310.481 10.622 -0.968 -0.583 H24 B5E 53 B5E H25 H25 H 0 1 N N N -156.966 184.088 308.789 10.410 0.533 1.352 H25 B5E 54 B5E H26 H26 H 0 1 N N N -156.150 186.344 309.419 8.245 1.491 1.949 H26 B5E 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B5E C5 C4 DOUB Y N 1 B5E C5 C6 SING Y N 2 B5E C4 C3 SING Y N 3 B5E C6 C7 DOUB Y N 4 B5E C18 C17 DOUB Y N 5 B5E C18 C19 SING Y N 6 B5E C17 C16 SING Y N 7 B5E C3 C2 DOUB Y N 8 B5E F1 C24 SING N N 9 B5E C19 C20 DOUB Y N 10 B5E C7 C2 SING Y N 11 B5E C7 C8 SING N N 12 B5E C2 C1 SING N N 13 B5E C16 N1 SING Y N 14 B5E C16 C21 DOUB Y N 15 B5E C24 F2 SING N N 16 B5E C24 F SING N N 17 B5E C24 C23 SING N N 18 B5E C20 C21 SING Y N 19 B5E C8 C23 DOUB Y N 20 B5E C8 C9 SING Y N 21 B5E N1 C15 DOUB Y N 22 B5E C21 N2 SING Y N 23 B5E C23 C22 SING Y N 24 B5E C1 C SING N N 25 B5E C9 C10 DOUB Y N 26 B5E C15 N2 SING Y N 27 B5E C15 C14 SING N N 28 B5E C22 C11 DOUB Y N 29 B5E C10 C11 SING Y N 30 B5E C13 C14 SING N N 31 B5E C13 N SING N N 32 B5E C11 C12 SING N N 33 B5E N C12 SING N N 34 B5E C6 H1 SING N N 35 B5E C5 H2 SING N N 36 B5E C4 H3 SING N N 37 B5E C3 H4 SING N N 38 B5E C1 H5 SING N N 39 B5E C1 H6 SING N N 40 B5E C H7 SING N N 41 B5E C H8 SING N N 42 B5E C H9 SING N N 43 B5E C22 H10 SING N N 44 B5E C10 H11 SING N N 45 B5E C9 H12 SING N N 46 B5E C12 H13 SING N N 47 B5E C12 H14 SING N N 48 B5E N H15 SING N N 49 B5E C13 H17 SING N N 50 B5E C13 H18 SING N N 51 B5E C14 H19 SING N N 52 B5E C14 H20 SING N N 53 B5E N2 H21 SING N N 54 B5E C20 H23 SING N N 55 B5E C19 H24 SING N N 56 B5E C18 H25 SING N N 57 B5E C17 H26 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B5E InChI InChI 1.03 "InChI=1S/C25H24F3N3/c1-2-18-7-3-4-8-19(18)20-12-11-17(15-21(20)25(26,27)28)16-29-14-13-24-30-22-9-5-6-10-23(22)31-24/h3-12,15,29H,2,13-14,16H2,1H3,(H,30,31)" B5E InChIKey InChI 1.03 VVMDVSURHYWQPU-UHFFFAOYSA-N B5E SMILES_CANONICAL CACTVS 3.385 "CCc1ccccc1c2ccc(CNCCc3[nH]c4ccccc4n3)cc2C(F)(F)F" B5E SMILES CACTVS 3.385 "CCc1ccccc1c2ccc(CNCCc3[nH]c4ccccc4n3)cc2C(F)(F)F" B5E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCc1ccccc1c2ccc(cc2C(F)(F)F)CNCCc3[nH]c4ccccc4n3" B5E SMILES "OpenEye OEToolkits" 2.0.6 "CCc1ccccc1c2ccc(cc2C(F)(F)F)CNCCc3[nH]c4ccccc4n3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B5E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-(1~{H}-benzimidazol-2-yl)-~{N}-[[4-(2-ethylphenyl)-3-(trifluoromethyl)phenyl]methyl]ethanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B5E "Create component" 2017-09-15 EBI B5E "Initial release" 2018-02-28 RCSB #