data_B5L # _chem_comp.id B5L _chem_comp.name "N~1~,N~1~,N~1~-tris(3-azaniumylpropyl)butane-1,4-diaminium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H38 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N4-bis(aminopropyl)spermidine" _chem_comp.pdbx_formal_charge 5 _chem_comp.pdbx_initial_date 2019-01-16 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B5L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6J26 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B5L C5 C1 C 0 1 N N N 74.299 69.368 16.631 0.889 -0.000 -0.762 C5 B5L 1 B5L C4 C2 C 0 1 N N N 75.506 70.318 16.547 2.101 -0.000 0.173 C4 B5L 2 B5L C3 C3 C 0 1 N N N 76.689 69.705 15.815 3.385 -0.000 -0.657 C3 B5L 3 B5L C2 C4 C 0 1 N N N 77.863 70.682 15.812 4.597 -0.000 0.278 C2 B5L 4 B5L N18 N1 N 1 1 N N N 76.323 68.518 20.738 -0.345 -4.897 0.036 N18 B5L 5 B5L C17 C5 C 0 1 N N N 75.705 67.982 19.519 -0.380 -3.698 0.883 C17 B5L 6 B5L C16 C6 C 0 1 N N N 74.202 68.196 19.495 -0.343 -2.449 0.001 C16 B5L 7 B5L C15 C7 C 0 1 N N N 73.776 69.592 19.030 -0.380 -1.199 0.883 C15 B5L 8 B5L N6 N2 N 1 1 N N N 73.257 69.754 17.632 -0.345 0.000 0.036 N6 B5L 9 B5L C11 C8 C 0 1 N N N 72.903 71.203 17.539 -0.380 1.199 0.883 C11 B5L 10 B5L C12 C9 C 0 1 N N N 72.554 71.747 16.144 -0.343 2.449 0.001 C12 B5L 11 B5L C13 C10 C 0 1 N N N 71.294 72.595 16.138 -0.380 3.698 0.883 C13 B5L 12 B5L N14 N3 N 1 1 N N N 70.705 72.621 14.794 -0.344 4.897 0.036 N14 B5L 13 B5L C7 C11 C 0 1 N N N 71.956 69.024 17.468 -1.508 0.000 -0.862 C7 B5L 14 B5L C8 C12 C 0 1 N N N 71.970 67.555 17.019 -2.793 0.000 -0.031 C8 B5L 15 B5L C9 C13 C 0 1 N N N 70.737 66.790 17.512 -4.004 0.000 -0.966 C9 B5L 16 B5L N10 N4 N 1 1 N N N 70.488 66.976 18.951 -5.238 0.000 -0.169 N10 B5L 17 B5L N1 N5 N 1 1 N N N 78.381 70.911 17.172 5.831 -0.000 -0.520 N1 B5L 18 B5L H1 H1 H 0 1 N N N 73.823 69.333 15.640 0.915 0.890 -1.390 H1 B5L 19 B5L H2 H2 H 0 1 N N N 74.671 68.367 16.895 0.915 -0.890 -1.390 H2 B5L 20 B5L H3 H3 H 0 1 N N N 75.821 70.577 17.569 2.074 0.890 0.802 H3 B5L 21 B5L H4 H4 H 0 1 N N N 75.198 71.231 16.015 2.074 -0.890 0.802 H4 B5L 22 B5L H5 H5 H 0 1 N N N 76.399 69.480 14.778 3.412 -0.890 -1.286 H5 B5L 23 B5L H6 H6 H 0 1 N N N 76.989 68.776 16.321 3.412 0.890 -1.286 H6 B5L 24 B5L H7 H7 H 0 1 N N N 78.669 70.269 15.188 4.570 0.890 0.906 H7 B5L 25 B5L H8 H8 H 0 1 N N N 77.528 71.642 15.391 4.570 -0.890 0.906 H8 B5L 26 B5L H9 H9 H 0 1 N N N 77.309 68.356 20.711 -0.369 -5.721 0.618 H9 B5L 27 B5L H10 H10 H 0 1 N N N 76.149 69.501 20.796 -1.144 -4.897 -0.581 H10 B5L 28 B5L H11 H11 H 0 1 N N N 75.932 68.063 21.538 0.502 -4.897 -0.512 H11 B5L 29 B5L H12 H12 H 0 1 N N N 75.910 66.903 19.463 -1.296 -3.698 1.475 H12 B5L 30 B5L H13 H13 H 0 1 N N N 76.148 68.485 18.647 0.483 -3.698 1.549 H13 B5L 31 B5L H14 H14 H 0 1 N N N 73.814 68.038 20.512 0.572 -2.449 -0.591 H14 B5L 32 B5L H15 H15 H 0 1 N N N 73.758 67.455 18.814 -1.206 -2.449 -0.665 H15 B5L 33 B5L H16 H16 H 0 1 N N N 74.653 70.249 19.129 -1.296 -1.199 1.475 H16 B5L 34 B5L H17 H17 H 0 1 N N N 72.983 69.934 19.712 0.483 -1.199 1.549 H17 B5L 35 B5L H18 H18 H 0 1 N N N 73.761 71.779 17.915 -1.295 1.199 1.475 H18 B5L 36 B5L H19 H19 H 0 1 N N N 72.033 71.375 18.190 0.483 1.199 1.549 H19 B5L 37 B5L H20 H20 H 0 1 N N N 72.408 70.896 15.462 0.572 2.449 -0.591 H20 B5L 38 B5L H21 H21 H 0 1 N N N 73.393 72.363 15.787 -1.206 2.449 -0.665 H21 B5L 39 B5L H22 H22 H 0 1 N N N 71.546 73.621 16.444 -1.295 3.698 1.475 H22 B5L 40 B5L H23 H23 H 0 1 N N N 70.567 72.169 16.845 0.483 3.698 1.549 H23 B5L 41 B5L H24 H24 H 0 1 N N N 69.877 73.182 14.803 0.503 4.897 -0.512 H24 B5L 42 B5L H25 H25 H 0 1 N N N 71.363 73.009 14.149 -1.143 4.897 -0.581 H25 B5L 43 B5L H26 H26 H 0 1 N N N 70.473 71.689 14.514 -0.369 5.721 0.618 H26 B5L 44 B5L H27 H27 H 0 1 N N N 71.367 69.581 16.725 -1.481 0.890 -1.490 H27 B5L 45 B5L H28 H28 H 0 1 N N N 71.444 69.057 18.441 -1.481 -0.890 -1.490 H28 B5L 46 B5L H29 H29 H 0 1 N N N 71.993 67.520 15.920 -2.819 -0.890 0.598 H29 B5L 47 B5L H30 H30 H 0 1 N N N 72.872 67.070 17.420 -2.819 0.890 0.598 H30 B5L 48 B5L H31 H31 H 0 1 N N N 69.857 67.144 16.954 -3.977 0.890 -1.595 H31 B5L 49 B5L H32 H32 H 0 1 N N N 70.887 65.718 17.317 -3.978 -0.890 -1.595 H32 B5L 50 B5L H33 H33 H 0 1 N N N 69.676 66.458 19.219 -5.262 -0.823 0.413 H33 B5L 51 B5L H34 H34 H 0 1 N N N 71.278 66.650 19.471 -5.262 0.824 0.413 H34 B5L 52 B5L H35 H35 H 0 1 N N N 70.341 67.947 19.141 -6.036 0.000 -0.785 H35 B5L 53 B5L H36 H36 H 0 1 N N N 79.146 71.553 17.134 5.855 -0.824 -1.102 H36 B5L 54 B5L H37 H37 H 0 1 N N N 77.655 71.291 17.745 5.855 0.823 -1.102 H37 B5L 55 B5L H38 H38 H 0 1 N N N 78.693 70.044 17.560 6.629 -0.000 0.097 H38 B5L 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B5L N14 C13 SING N N 1 B5L C2 C3 SING N N 2 B5L C2 N1 SING N N 3 B5L C3 C4 SING N N 4 B5L C13 C12 SING N N 5 B5L C12 C11 SING N N 6 B5L C4 C5 SING N N 7 B5L C5 N6 SING N N 8 B5L C8 C7 SING N N 9 B5L C8 C9 SING N N 10 B5L C7 N6 SING N N 11 B5L C9 N10 SING N N 12 B5L C11 N6 SING N N 13 B5L N6 C15 SING N N 14 B5L C15 C16 SING N N 15 B5L C16 C17 SING N N 16 B5L C17 N18 SING N N 17 B5L C5 H1 SING N N 18 B5L C5 H2 SING N N 19 B5L C4 H3 SING N N 20 B5L C4 H4 SING N N 21 B5L C3 H5 SING N N 22 B5L C3 H6 SING N N 23 B5L C2 H7 SING N N 24 B5L C2 H8 SING N N 25 B5L N18 H9 SING N N 26 B5L N18 H10 SING N N 27 B5L N18 H11 SING N N 28 B5L C17 H12 SING N N 29 B5L C17 H13 SING N N 30 B5L C16 H14 SING N N 31 B5L C16 H15 SING N N 32 B5L C15 H16 SING N N 33 B5L C15 H17 SING N N 34 B5L C11 H18 SING N N 35 B5L C11 H19 SING N N 36 B5L C12 H20 SING N N 37 B5L C12 H21 SING N N 38 B5L C13 H22 SING N N 39 B5L C13 H23 SING N N 40 B5L N14 H24 SING N N 41 B5L N14 H25 SING N N 42 B5L N14 H26 SING N N 43 B5L C7 H27 SING N N 44 B5L C7 H28 SING N N 45 B5L C8 H29 SING N N 46 B5L C8 H30 SING N N 47 B5L C9 H31 SING N N 48 B5L C9 H32 SING N N 49 B5L N10 H33 SING N N 50 B5L N10 H34 SING N N 51 B5L N10 H35 SING N N 52 B5L N1 H36 SING N N 53 B5L N1 H37 SING N N 54 B5L N1 H38 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B5L SMILES ACDLabs 12.01 "C([N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+])CCC[NH3+]" B5L InChI InChI 1.03 "InChI=1S/C13H34N5/c14-6-1-2-10-18(11-3-7-15,12-4-8-16)13-5-9-17/h1-17H2/q+1/p+4" B5L InChIKey InChI 1.03 FMTAVYOBEGHWPT-UHFFFAOYSA-R B5L SMILES_CANONICAL CACTVS 3.385 "[NH3+]CCCC[N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+]" B5L SMILES CACTVS 3.385 "[NH3+]CCCC[N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+]" B5L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C(CC[N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+])C[NH3+]" B5L SMILES "OpenEye OEToolkits" 2.0.6 "C(CC[N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+])C[NH3+]" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B5L "SYSTEMATIC NAME" ACDLabs 12.01 "N~1~,N~1~,N~1~-tris(3-azaniumylpropyl)butane-1,4-diaminium" B5L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-azaniumylbutyl-tris(3-azaniumylpropyl)azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B5L "Create component" 2019-01-16 PDBJ B5L "Initial release" 2019-06-26 RCSB B5L "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id B5L _pdbx_chem_comp_synonyms.name "N4-bis(aminopropyl)spermidine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##