data_B6P # _chem_comp.id B6P _chem_comp.name ;P1,P6-Di(adenosine-5') hexaphosphate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 N10 O25 P6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-05-27 _chem_comp.pdbx_modified_date 2011-07-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 996.347 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B6P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RQH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B6P N1 N1 N 0 1 Y N N 22.406 26.815 29.327 -5.468 -7.786 2.799 N1 B6P 1 B6P C2 C2 C 0 1 Y N N 21.088 26.991 29.134 -5.652 -7.783 1.491 C2 B6P 2 B6P N3 N3 N 0 1 Y N N 20.516 26.773 27.924 -5.904 -6.682 0.816 N3 B6P 3 B6P C4 C4 C 0 1 Y N N 21.295 26.376 26.900 -5.985 -5.510 1.436 C4 B6P 4 B6P C5 C5 C 0 1 Y N N 22.647 26.135 27.065 -5.798 -5.460 2.828 C5 B6P 5 B6P C6 C6 C 0 1 Y N N 23.201 26.385 28.316 -5.530 -6.662 3.505 C6 B6P 6 B6P N6 N6 N 0 1 N N N 24.517 26.203 28.474 -5.336 -6.674 4.875 N6 B6P 7 B6P N7 N7 N 0 1 Y N N 23.167 25.761 25.839 -5.931 -4.165 3.202 N7 B6P 8 B6P C8 C8 C 0 1 Y N N 22.109 25.730 24.974 -6.183 -3.435 2.154 C8 B6P 9 B6P N9 N9 N 0 1 Y N N 20.990 26.110 25.611 -6.226 -4.219 1.040 N9 B6P 10 B6P PA PA P 0 1 N N N 19.482 26.001 19.229 -6.397 2.009 -1.092 PA B6P 11 B6P PB PB P 0 1 N N N 19.120 23.418 17.617 -4.426 4.201 -1.404 PB B6P 12 B6P PD PD P 0 1 N N N 20.412 23.733 13.375 0.720 5.419 0.804 PD B6P 13 B6P PE PE P 0 1 N N N 23.127 24.766 13.452 3.591 4.701 0.964 PE B6P 14 B6P PG PG P 0 1 N N N 21.350 22.815 15.973 -1.845 5.466 -0.682 PG B6P 15 B6P PZ PZ P 0 1 N N N 24.687 25.648 11.404 5.722 2.703 1.466 PZ B6P 16 B6P C11 C11 C 0 1 N N R 19.619 26.208 25.076 -6.483 -3.766 -0.329 C11 B6P 17 B6P C12 C12 C 0 1 N N R 22.980 30.003 7.887 6.792 -2.890 0.080 C12 B6P 18 B6P O1A O1A O 0 1 N N N 20.837 26.628 19.296 -6.990 2.291 0.378 O1A B6P 19 B6P O1B O1B O 0 1 N N N 18.688 24.322 16.497 -5.162 5.087 -0.475 O1B B6P 20 B6P O1D O1D O 0 1 N N N 19.019 24.373 13.263 0.275 5.391 2.351 O1D B6P 21 B6P O1E O1E O 0 1 N N N 23.387 23.320 13.052 3.719 5.237 2.337 O1E B6P 22 B6P O1G O1G O 0 1 N N N 21.784 24.260 16.293 -1.526 6.356 -1.985 O1G B6P 23 B6P N1Y N1Y N 0 1 Y N N 22.855 35.038 6.970 7.565 -6.545 -3.529 N1Y B6P 24 B6P O1Z O1Z O 0 1 N N N 25.587 26.666 12.026 6.960 3.310 0.636 O1Z B6P 25 B6P C21 C21 C 0 1 N N R 19.374 27.457 24.279 -7.993 -3.868 -0.664 C21 B6P 26 B6P O21 O21 O 0 1 N N N 19.063 28.609 25.092 -8.322 -5.175 -1.140 O21 B6P 27 B6P C22 C22 C 0 1 N N R 24.312 29.341 7.681 7.735 -3.243 1.251 C22 B6P 28 B6P O22 O22 O 0 1 N N N 25.007 29.796 6.501 7.370 -4.499 1.826 O22 B6P 29 B6P O2A O2A O 0 1 N N N 18.445 26.550 18.256 -7.303 2.586 -2.109 O2A B6P 30 B6P O2B O2B O 0 1 N N N 18.063 22.437 18.030 -4.685 4.678 -2.920 O2B B6P 31 B6P O2D O2D O 0 1 N N N 20.890 22.798 12.260 1.020 6.812 0.402 O2D B6P 32 B6P O2E O2E O 0 1 N N N 23.657 25.168 14.827 4.258 5.731 -0.079 O2E B6P 33 B6P O2G O2G O 0 1 N N N 22.450 21.750 15.907 -2.472 6.315 0.355 O2G B6P 34 B6P C2Y C2Y C 0 1 Y N N 22.734 34.008 6.116 6.876 -6.627 -2.405 C2Y B6P 35 B6P O2Z O2Z O 0 1 N N N 25.236 24.269 11.056 5.845 3.090 2.889 O2Z B6P 36 B6P C31 C31 C 0 1 N N S 18.265 26.947 23.353 -8.148 -2.816 -1.788 C31 B6P 37 B6P O31 O31 O 0 1 N N N 16.983 26.957 23.996 -8.111 -3.444 -3.071 O31 B6P 38 B6P C32 C32 C 0 1 N N S 23.866 27.875 7.696 7.518 -2.099 2.266 C32 B6P 39 B6P O32 O32 O 0 1 N N N 23.328 27.466 6.431 7.012 -2.614 3.500 O32 B6P 40 B6P O3A O3A O 0 1 N N N 19.722 24.374 18.845 -4.942 2.687 -1.222 O3A B6P 41 B6P O3B O3B O 0 1 N N N 20.316 22.439 17.165 -2.851 4.273 -1.080 O3B B6P 42 B6P O3D O3D O 0 1 N N N 21.505 24.908 13.664 2.033 4.509 0.606 O3D B6P 43 B6P O3E O3E O 0 1 N N N 23.514 25.738 12.351 4.342 3.280 0.870 O3E B6P 44 B6P O3G O3G O 0 1 N N N 20.364 22.749 14.682 -0.475 4.843 -0.109 O3G B6P 45 B6P N3Y N3Y N 0 1 Y N N 22.786 32.723 6.546 6.760 -5.614 -1.572 N3Y B6P 46 B6P C41 C41 C 0 1 N N R 18.697 25.508 22.985 -6.931 -1.887 -1.607 C41 B6P 47 B6P O41 O41 O 0 1 N N N 19.469 25.137 24.115 -6.201 -2.356 -0.460 O41 B6P 48 B6P C42 C42 C 0 1 N N R 22.795 27.806 8.810 6.469 -1.190 1.589 C42 B6P 49 B6P O42 O42 O 0 1 N N N 22.287 29.130 8.809 6.603 -1.461 0.176 O42 B6P 50 B6P C4Y C4Y C 0 1 Y N N 22.968 32.486 7.859 7.343 -4.449 -1.836 C4Y B6P 51 B6P C51 C51 C 0 1 N N N 19.614 25.464 21.763 -7.403 -0.451 -1.374 C51 B6P 52 B6P O51 O51 O 0 1 N N N 18.791 25.825 20.655 -6.271 0.420 -1.324 O51 B6P 53 B6P C52 C52 C 0 1 N N N 23.398 27.543 10.190 6.773 0.281 1.879 C52 B6P 54 B6P O52 O52 O 0 1 N N N 23.876 26.200 10.147 5.729 1.098 1.343 O52 B6P 55 B6P C5Y C5Y C 0 1 Y N N 23.048 33.514 8.781 8.088 -4.311 -3.020 C5Y B6P 56 B6P C6Y C6Y C 0 1 Y N N 23.006 34.818 8.300 8.183 -5.421 -3.877 C6Y B6P 57 B6P N6Y N6Y N 0 1 N N N 23.132 35.821 9.177 8.903 -5.344 -5.056 N6Y B6P 58 B6P N7Y N7Y N 0 1 Y N N 23.249 32.954 10.029 8.568 -3.045 -3.044 N7Y B6P 59 B6P C8Y C8Y C 0 1 Y N N 23.230 31.600 9.843 8.175 -2.412 -1.977 C8Y B6P 60 B6P N9Y N9Y N 0 1 Y N N 23.072 31.323 8.539 7.416 -3.236 -1.200 N9Y B6P 61 B6P H2 H2 H 0 1 N N N 20.471 27.313 29.960 -5.593 -8.720 0.956 H2 B6P 62 B6P HN6 HN6 H 0 1 N N N 24.775 26.430 29.413 -5.384 -5.847 5.379 HN6 B6P 63 B6P HN6A HN6A H 0 0 N N N 24.746 25.248 28.287 -5.152 -7.510 5.331 HN6A B6P 64 B6P H8 H8 H 0 1 N N N 22.165 25.443 23.934 -6.335 -2.366 2.166 H8 B6P 65 B6P H11 H11 H 0 1 N N N 18.934 26.182 25.936 -5.892 -4.343 -1.040 H11 B6P 66 B6P H12 H12 H 0 1 N N N 22.494 30.158 6.913 5.839 -3.407 0.189 H12 B6P 67 B6P HO1A HO1A H 0 0 N N N 20.885 27.346 18.675 -6.446 1.940 1.096 HO1A B6P 68 B6P HO1D HO1D H 0 0 N N N 18.602 24.087 12.459 0.062 4.508 2.683 HO1D B6P 69 B6P HO1G HO1G H 0 0 N N N 22.726 24.289 16.411 -1.113 5.863 -2.707 HO1G B6P 70 B6P HO1Z HO1Z H 0 0 N N N 26.456 26.297 12.135 6.945 3.096 -0.307 HO1Z B6P 71 B6P H21 H21 H 0 1 N N N 20.238 27.865 23.734 -8.602 -3.607 0.201 H21 B6P 72 B6P HO21 HO21 H 0 0 N N N 18.919 29.363 24.532 -9.256 -5.289 -1.363 HO21 B6P 73 B6P H22 H22 H 0 1 N N N 25.088 29.564 8.428 8.772 -3.263 0.914 H22 B6P 74 B6P HO22 HO22 H 0 0 N N N 25.838 29.342 6.428 7.930 -4.771 2.567 HO22 B6P 75 B6P HO2B HO2B H 0 0 N N N 17.287 22.564 17.497 -4.232 4.141 -3.584 HO2B B6P 76 B6P HO2E HO2E H 0 0 N N N 24.083 24.422 15.233 4.210 5.443 -1.001 HO2E B6P 77 B6P H2Y H2Y H 0 1 N N N 22.592 34.208 5.064 6.390 -7.559 -2.161 H2Y B6P 78 B6P H31 H31 H 0 1 N N N 18.146 27.589 22.467 -9.077 -2.259 -1.664 H31 B6P 79 B6P HO31 HO31 H 0 0 N N N 16.323 26.635 23.393 -8.821 -4.083 -3.217 HO31 B6P 80 B6P H32 H32 H 0 1 N N N 24.709 27.194 7.882 8.447 -1.554 2.432 H32 B6P 81 B6P HO32 HO32 H 0 0 N N N 23.063 26.555 6.479 7.606 -3.239 3.939 HO32 B6P 82 B6P H41 H41 H 0 1 N N N 17.833 24.869 22.750 -6.296 -1.932 -2.491 H41 B6P 83 B6P H42 H42 H 0 1 N N N 22.068 27.001 8.628 5.467 -1.445 1.932 H42 B6P 84 B6P H51 H51 H 0 1 N N N 20.450 26.170 21.876 -8.059 -0.147 -2.190 H51 B6P 85 B6P H51A H51A H 0 0 N N N 20.034 24.457 21.626 -7.947 -0.395 -0.431 H51A B6P 86 B6P H52 H52 H 0 1 N N N 24.220 28.244 10.398 6.835 0.433 2.957 H52 B6P 87 B6P H52A H52A H 0 0 N N N 22.639 27.663 10.978 7.721 0.555 1.418 H52A B6P 88 B6P HN6Y HN6Y H 0 0 N N N 23.095 36.695 8.692 8.961 -6.117 -5.640 HN6Y B6P 89 B6P HN6B HN6B H 0 0 N N N 22.387 35.777 9.842 9.349 -4.518 -5.299 HN6B B6P 90 B6P H8Y H8Y H 0 1 N N N 23.327 30.864 10.627 8.414 -1.386 -1.741 H8Y B6P 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B6P C6 N1 DOUB Y N 1 B6P C2 N1 SING Y N 2 B6P N3 C2 DOUB Y N 3 B6P C2 H2 SING N N 4 B6P C4 N3 SING Y N 5 B6P N9 C4 SING Y N 6 B6P C4 C5 DOUB Y N 7 B6P N7 C5 SING Y N 8 B6P C5 C6 SING Y N 9 B6P C6 N6 SING N N 10 B6P N6 HN6 SING N N 11 B6P N6 HN6A SING N N 12 B6P C8 N7 DOUB Y N 13 B6P C8 N9 SING Y N 14 B6P C8 H8 SING N N 15 B6P C11 N9 SING N N 16 B6P O2A PA DOUB N N 17 B6P O3A PA SING N N 18 B6P PA O1A SING N N 19 B6P PA O51 SING N N 20 B6P O1B PB DOUB N N 21 B6P O3B PB SING N N 22 B6P PB O2B SING N N 23 B6P PB O3A SING N N 24 B6P O2D PD DOUB N N 25 B6P O1D PD SING N N 26 B6P PD O3D SING N N 27 B6P PD O3G SING N N 28 B6P O3E PE SING N N 29 B6P O1E PE DOUB N N 30 B6P PE O3D SING N N 31 B6P PE O2E SING N N 32 B6P O3G PG SING N N 33 B6P O2G PG DOUB N N 34 B6P PG O1G SING N N 35 B6P PG O3B SING N N 36 B6P O52 PZ SING N N 37 B6P O2Z PZ DOUB N N 38 B6P PZ O1Z SING N N 39 B6P PZ O3E SING N N 40 B6P O41 C11 SING N N 41 B6P C21 C11 SING N N 42 B6P C11 H11 SING N N 43 B6P C22 C12 SING N N 44 B6P C12 N9Y SING N N 45 B6P C12 O42 SING N N 46 B6P C12 H12 SING N N 47 B6P O1A HO1A SING N N 48 B6P O1D HO1D SING N N 49 B6P O1G HO1G SING N N 50 B6P C2Y N1Y DOUB Y N 51 B6P N1Y C6Y SING Y N 52 B6P O1Z HO1Z SING N N 53 B6P C31 C21 SING N N 54 B6P C21 O21 SING N N 55 B6P C21 H21 SING N N 56 B6P O21 HO21 SING N N 57 B6P O22 C22 SING N N 58 B6P C22 C32 SING N N 59 B6P C22 H22 SING N N 60 B6P O22 HO22 SING N N 61 B6P O2B HO2B SING N N 62 B6P O2E HO2E SING N N 63 B6P C2Y N3Y SING Y N 64 B6P C2Y H2Y SING N N 65 B6P C41 C31 SING N N 66 B6P C31 O31 SING N N 67 B6P C31 H31 SING N N 68 B6P O31 HO31 SING N N 69 B6P O32 C32 SING N N 70 B6P C32 C42 SING N N 71 B6P C32 H32 SING N N 72 B6P O32 HO32 SING N N 73 B6P N3Y C4Y DOUB Y N 74 B6P C51 C41 SING N N 75 B6P C41 O41 SING N N 76 B6P C41 H41 SING N N 77 B6P O42 C42 SING N N 78 B6P C42 C52 SING N N 79 B6P C42 H42 SING N N 80 B6P C4Y N9Y SING Y N 81 B6P C4Y C5Y SING Y N 82 B6P O51 C51 SING N N 83 B6P C51 H51 SING N N 84 B6P C51 H51A SING N N 85 B6P O52 C52 SING N N 86 B6P C52 H52 SING N N 87 B6P C52 H52A SING N N 88 B6P C6Y C5Y DOUB Y N 89 B6P C5Y N7Y SING Y N 90 B6P C6Y N6Y SING N N 91 B6P N6Y HN6Y SING N N 92 B6P N6Y HN6B SING N N 93 B6P C8Y N7Y DOUB Y N 94 B6P N9Y C8Y SING Y N 95 B6P C8Y H8Y SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B6P SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" B6P SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" B6P SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)N" B6P SMILES "OpenEye OEToolkits" 1.7.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)N" B6P InChI InChI 1.03 ;InChI=1S/C20H30N10O25P6/c21-15-9-17(25-3-23-15)29(5-27-9)19-13(33)11(31)7(49-19)1-47-56(35,36)51-58(39,40)53-60(43,44)55-61(45,46)54-59(41,42)52-57(37,38)48-2-8-12(32)14(34)20(50-8)30-6-28-10-16(22)24-4-26-18(10)30/h3-8,11-14,19-20,31-34H,1-2H2,(H,35,36)(H,37,38)(H,39,40)(H,41,42)(H,43,44)(H,45,46)(H2,21,23,25)(H2,22,24,26)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1 ; B6P InChIKey InChI 1.03 PZCFFCOJNXGTIM-XPWFQUROSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B6P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 ;[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B6P "Create component" 2011-05-27 RCSB B6P "Modify aromatic_flag" 2011-06-04 RCSB B6P "Modify descriptor" 2011-06-04 RCSB #