data_B6Y # _chem_comp.id B6Y _chem_comp.name "(1R,2S)-2-{[N-({[1-(tert-butoxycarbonyl)-4-ethylpiperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H46 N4 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-08-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 606.729 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B6Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WKM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B6Y C02 C1 C 0 1 N N N N N N -21.560 -5.493 2.041 -1.004 -1.417 0.479 C02 B6Y 1 B6Y C04 C2 C 0 1 N N S N N N -20.941 -3.107 1.898 1.374 -0.941 0.709 C04 B6Y 2 B6Y C05 C3 C 0 1 N N N N N N -20.959 -1.993 0.850 2.027 -2.311 0.903 C05 B6Y 3 B6Y C06 C4 C 0 1 N N N N N N -20.470 -2.427 -0.542 1.095 -3.209 1.720 C06 B6Y 4 B6Y C07 C5 C 0 1 N N N N N N -18.940 -2.453 -0.604 1.690 -4.615 1.808 C07 B6Y 5 B6Y C08 C6 C 0 1 N N N N N N -21.038 -1.525 -1.638 0.937 -2.632 3.128 C08 B6Y 6 B6Y C09 C7 C 0 1 N N N N N N -21.482 -2.563 3.229 2.341 -0.019 0.012 C09 B6Y 7 B6Y C11 C8 C 0 1 N N S N N N -21.082 -1.377 5.418 4.422 1.247 -0.043 C11 B6Y 8 B6Y C12 C9 C 0 1 N N N N N N -20.445 -2.139 6.589 4.747 0.808 -1.472 C12 B6Y 9 B6Y C13 C10 C 0 1 N N S N N N -20.821 -3.622 6.641 5.482 -0.533 -1.440 C13 B6Y 10 B6Y C14 C11 C 0 1 N N N N N N -20.130 -4.294 7.903 5.807 -0.993 -2.844 C14 B6Y 11 B6Y C16 C12 C 0 1 N N N N N N -22.460 -4.862 7.741 7.733 -1.345 -1.594 C16 B6Y 12 B6Y C17 C13 C 0 1 N N N N N N -22.327 -3.803 6.882 6.863 -0.378 -0.762 C17 B6Y 13 B6Y C19 C14 C 0 1 N N R N N N -20.707 0.092 5.412 3.735 2.613 -0.072 C19 B6Y 14 B6Y C23 C15 C 0 1 N N N N N N -22.100 -7.794 2.237 -3.316 -2.006 0.409 C23 B6Y 15 B6Y N03 N1 N 0 1 N N N N N N -21.797 -4.188 1.478 0.165 -1.087 -0.105 N03 B6Y 16 B6Y N10 N2 N 0 1 N N N N N N -20.584 -1.900 4.165 3.530 0.264 0.578 N10 B6Y 17 B6Y N15 N3 N 0 1 N N N N N N -21.094 -5.007 8.550 7.075 -1.437 -2.903 N15 B6Y 18 B6Y O01 O1 O 0 1 N N N N N N -20.715 -5.630 2.877 -1.055 -1.594 1.680 O01 B6Y 19 B6Y O18 O2 O 0 1 N N N N N N -18.989 -4.173 8.211 5.037 -0.965 -3.780 O18 B6Y 20 B6Y O20 O3 O 0 1 N N N N N N -21.346 0.676 4.315 4.626 3.583 -0.626 O20 B6Y 21 B6Y O21 O4 O 0 1 N N N N N N -22.624 -2.673 3.510 2.048 0.469 -1.060 O21 B6Y 22 B6Y O22 O5 O 0 1 N N N N N N -22.340 -6.566 1.581 -2.117 -1.546 -0.268 O22 B6Y 23 B6Y S1 S1 S 0 1 N Y N N N N -18.933 0.233 5.160 3.286 3.100 1.617 S1 B6Y 24 B6Y H1 H1 H 0 1 N N N N N N -19.909 -3.460 2.040 1.110 -0.523 1.681 H1 B6Y 25 B6Y H2 H2 H 0 1 N N N N N N -20.312 -1.177 1.204 2.210 -2.767 -0.070 H2 B6Y 26 B6Y H3 H3 H 0 1 N N N N N N -21.992 -1.627 0.754 2.972 -2.192 1.432 H3 B6Y 27 B6Y H4 H4 H 0 1 N N N N N N -20.833 -3.449 -0.723 0.119 -3.256 1.236 H4 B6Y 28 B6Y H5 H5 H 0 1 N N N N N N -18.551 -3.106 0.191 2.665 -4.568 2.292 H5 B6Y 29 B6Y H6 H6 H 0 1 N N N N N N -18.619 -2.837 -1.584 1.026 -5.255 2.390 H6 B6Y 30 B6Y H7 H7 H 0 1 N N N N N N -18.550 -1.434 -0.464 1.802 -5.026 0.805 H7 B6Y 31 B6Y H8 H8 H 0 1 N N N N N N -22.136 -1.520 -1.577 0.513 -1.630 3.066 H8 B6Y 32 B6Y H9 H9 H 0 1 N N N N N N -20.658 -0.501 -1.504 0.274 -3.272 3.711 H9 B6Y 33 B6Y H10 H10 H 0 1 N N N N N N -20.728 -1.905 -2.623 1.913 -2.585 3.613 H10 B6Y 34 B6Y H11 H11 H 0 1 N N N N N N -22.176 -1.478 5.471 5.344 1.316 0.534 H11 B6Y 35 B6Y H12 H12 H 0 1 N N N N N N -19.351 -2.062 6.499 3.822 0.703 -2.039 H12 B6Y 36 B6Y H13 H13 H 0 1 N N N N N N -20.770 -1.666 7.528 5.380 1.558 -1.947 H13 B6Y 37 B6Y H14 H14 H 0 1 N N N N N N -20.509 -4.137 5.721 4.884 -1.282 -0.920 H14 B6Y 38 B6Y H15 H15 H 0 1 N N N N N N -23.290 -4.676 8.438 8.741 -0.945 -1.706 H15 B6Y 39 B6Y H16 H16 H 0 1 N N N N N N -22.658 -5.783 7.172 7.768 -2.326 -1.120 H16 B6Y 40 B6Y H17 H17 H 0 1 N N N N N N -22.752 -2.893 7.332 7.227 0.646 -0.848 H17 B6Y 41 B6Y H18 H18 H 0 1 N N N N N N -22.841 -4.017 5.933 6.822 -0.690 0.282 H18 B6Y 42 B6Y H19 H19 H 0 1 N N N N N N -20.954 0.575 6.369 2.835 2.554 -0.684 H19 B6Y 43 B6Y H23 H23 H 0 1 N N N N N N -22.532 -4.037 0.817 0.205 -0.946 -1.064 H23 B6Y 44 B6Y H24 H24 H 0 1 N N N N N N -19.614 -1.806 3.939 3.796 -0.182 1.398 H24 B6Y 45 B6Y H25 H25 H 0 1 N N N N N N -20.966 -5.533 9.391 7.499 -1.774 -3.707 H25 B6Y 46 B6Y H26 H26 H 0 1 N N N N N N -21.133 1.601 4.279 4.908 3.386 -1.530 H26 B6Y 47 B6Y O1 O6 O 0 1 N N N N N N ? ? ? 4.393 2.939 2.493 O1 B6Y 48 B6Y O2 O7 O 0 1 N N N N N N ? ? ? 2.531 4.304 1.605 O2 B6Y 49 B6Y O3 O8 O 0 1 N N N N N N ? ? ? 2.293 2.039 2.067 O3 B6Y 50 B6Y C1 C16 C 0 1 N N N N N N ? ? ? -3.724 -0.984 1.474 C1 B6Y 51 B6Y C2 C17 C 0 1 N N N N N N ? ? ? -3.967 0.373 0.807 C2 B6Y 52 B6Y N1 N4 N 0 1 N N N N N N ? ? ? -4.949 0.201 -0.272 N1 B6Y 53 B6Y C4 C18 C 0 1 N N N N N N ? ? ? -4.699 -0.818 -1.299 C4 B6Y 54 B6Y C5 C19 C 0 1 N N N N N N ? ? ? -4.448 -2.163 -0.609 C5 B6Y 55 B6Y C3 C20 C 0 1 N N N N N N ? ? ? -6.059 0.964 -0.317 C3 B6Y 56 B6Y O4 O9 O 0 1 N N N N N N ? ? ? -6.255 1.804 0.539 O4 B6Y 57 B6Y O5 O10 O 0 1 N N N N N N ? ? ? -6.951 0.796 -1.312 O5 B6Y 58 B6Y C10 C21 C 0 1 N N N N N N ? ? ? -3.039 -3.354 1.076 C10 B6Y 59 B6Y H21 H21 H 0 1 N Y N N N N ? ? ? 1.959 2.168 2.965 H21 B6Y 60 B6Y H22 H22 H 0 1 N N N N N N ? ? ? -4.638 -1.317 1.966 H22 B6Y 61 B6Y H27 H27 H 0 1 N N N N N N ? ? ? -2.927 -0.890 2.211 H27 B6Y 62 B6Y H28 H28 H 0 1 N N N N N N ? ? ? -4.352 1.078 1.544 H28 B6Y 63 B6Y H29 H29 H 0 1 N N N N N N ? ? ? -3.031 0.749 0.393 H29 B6Y 64 B6Y H30 H30 H 0 1 N N N N N N ? ? ? -5.568 -0.900 -1.953 H30 B6Y 65 B6Y H31 H31 H 0 1 N N N N N N ? ? ? -3.823 -0.539 -1.885 H31 B6Y 66 B6Y H32 H32 H 0 1 N N N N N N ? ? ? -4.166 -2.907 -1.354 H32 B6Y 67 B6Y H33 H33 H 0 1 N N N N N N ? ? ? -5.355 -2.484 -0.098 H33 B6Y 68 B6Y C6 C22 C 0 1 N N N N N N ? ? ? -8.123 1.653 -1.298 C6 B6Y 69 B6Y C7 C23 C 0 1 N N N N N N ? ? ? -7.686 3.117 -1.381 C7 B6Y 70 B6Y C8 C24 C 0 1 N N N N N N ? ? ? -9.014 1.318 -2.496 C8 B6Y 71 B6Y C9 C25 C 0 1 N N N N N N ? ? ? -8.905 1.427 -0.002 C9 B6Y 72 B6Y H34 H34 H 0 1 N N N N N N ? ? ? -7.130 3.278 -2.304 H34 B6Y 73 B6Y H35 H35 H 0 1 N N N N N N ? ? ? -8.566 3.760 -1.371 H35 B6Y 74 B6Y H36 H36 H 0 1 N N N N N N ? ? ? -7.052 3.355 -0.528 H36 B6Y 75 B6Y H37 H37 H 0 1 N N N N N N ? ? ? -9.326 0.275 -2.437 H37 B6Y 76 B6Y H38 H38 H 0 1 N N N N N N ? ? ? -9.894 1.961 -2.485 H38 B6Y 77 B6Y H39 H39 H 0 1 N N N N N N ? ? ? -8.458 1.479 -3.419 H39 B6Y 78 B6Y H40 H40 H 0 1 N N N N N N ? ? ? -8.270 1.665 0.851 H40 B6Y 79 B6Y H41 H41 H 0 1 N N N N N N ? ? ? -9.785 2.070 0.008 H41 B6Y 80 B6Y H42 H42 H 0 1 N N N N N N ? ? ? -9.216 0.384 0.057 H42 B6Y 81 B6Y C15 C26 C 0 1 N N N N N N ? ? ? -2.581 -4.361 0.019 C15 B6Y 82 B6Y H20 H20 H 0 1 N N N N N N ? ? ? -2.258 -3.235 1.827 H20 B6Y 83 B6Y H43 H43 H 0 1 N N N N N N ? ? ? -3.950 -3.717 1.553 H43 B6Y 84 B6Y H44 H44 H 0 1 N N N N N N ? ? ? -2.463 -5.343 0.479 H44 B6Y 85 B6Y H45 H45 H 0 1 N N N N N N ? ? ? -3.326 -4.419 -0.774 H45 B6Y 86 B6Y H46 H46 H 0 1 N N N N N N ? ? ? -1.628 -4.040 -0.400 H46 B6Y 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B6Y C08 C06 SING N N 1 B6Y C07 C06 SING N N 2 B6Y C06 C05 SING N N 3 B6Y C05 C04 SING N N 4 B6Y N03 C04 SING N N 5 B6Y N03 C02 SING N N 6 B6Y O22 C02 SING N N 7 B6Y O22 C23 SING N N 8 B6Y C04 C09 SING N N 9 B6Y C02 O01 DOUB N N 10 B6Y C09 O21 DOUB N N 11 B6Y C09 N10 SING N N 12 B6Y N10 C11 SING N N 13 B6Y O20 C19 SING N N 14 B6Y C19 C11 SING N N 15 B6Y C11 C12 SING N N 16 B6Y C12 C13 SING N N 17 B6Y C13 C17 SING N N 18 B6Y C13 C14 SING N N 19 B6Y C17 C16 SING N N 20 B6Y C16 N15 SING N N 21 B6Y C14 O18 DOUB N N 22 B6Y C14 N15 SING N N 23 B6Y C19 S1 SING N N 24 B6Y C04 H1 SING N N 25 B6Y C05 H2 SING N N 26 B6Y C05 H3 SING N N 27 B6Y C06 H4 SING N N 28 B6Y C07 H5 SING N N 29 B6Y C07 H6 SING N N 30 B6Y C07 H7 SING N N 31 B6Y C08 H8 SING N N 32 B6Y C08 H9 SING N N 33 B6Y C08 H10 SING N N 34 B6Y C11 H11 SING N N 35 B6Y C12 H12 SING N N 36 B6Y C12 H13 SING N N 37 B6Y C13 H14 SING N N 38 B6Y C16 H15 SING N N 39 B6Y C16 H16 SING N N 40 B6Y C17 H17 SING N N 41 B6Y C17 H18 SING N N 42 B6Y C19 H19 SING N N 43 B6Y N03 H23 SING N N 44 B6Y N10 H24 SING N N 45 B6Y N15 H25 SING N N 46 B6Y O20 H26 SING N N 47 B6Y S1 O1 DOUB N N 48 B6Y S1 O2 DOUB N N 49 B6Y S1 O3 SING N N 50 B6Y C23 C1 SING N N 51 B6Y C1 C2 SING N N 52 B6Y C2 N1 SING N N 53 B6Y N1 C4 SING N N 54 B6Y C4 C5 SING N N 55 B6Y C5 C23 SING N N 56 B6Y N1 C3 SING N N 57 B6Y C3 O4 DOUB N N 58 B6Y C3 O5 SING N N 59 B6Y C23 C10 SING N N 60 B6Y O3 H21 SING N N 61 B6Y C1 H22 SING N N 62 B6Y C1 H27 SING N N 63 B6Y C2 H28 SING N N 64 B6Y C2 H29 SING N N 65 B6Y C4 H30 SING N N 66 B6Y C4 H31 SING N N 67 B6Y C5 H32 SING N N 68 B6Y C5 H33 SING N N 69 B6Y O5 C6 SING N N 70 B6Y C6 C7 SING N N 71 B6Y C6 C8 SING N N 72 B6Y C6 C9 SING N N 73 B6Y C7 H34 SING N N 74 B6Y C7 H35 SING N N 75 B6Y C7 H36 SING N N 76 B6Y C8 H37 SING N N 77 B6Y C8 H38 SING N N 78 B6Y C8 H39 SING N N 79 B6Y C9 H40 SING N N 80 B6Y C9 H41 SING N N 81 B6Y C9 H42 SING N N 82 B6Y C10 C15 SING N N 83 B6Y C10 H20 SING N N 84 B6Y C10 H43 SING N N 85 B6Y C15 H44 SING N N 86 B6Y C15 H45 SING N N 87 B6Y C15 H46 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B6Y SMILES ACDLabs 12.01 "C(=O)(NC(C(=O)NC(CC1CCNC1=O)C(S(=O)(=O)O)O)CC(C)C)OC2(CCN(CC2)C(=O)OC(C)(C)C)CC" B6Y InChI InChI 1.03 "InChI=1S/C26H46N4O10S/c1-7-26(9-12-30(13-10-26)24(35)40-25(4,5)6)39-23(34)29-18(14-16(2)3)21(32)28-19(22(33)41(36,37)38)15-17-8-11-27-20(17)31/h16-19,22,33H,7-15H2,1-6H3,(H,27,31)(H,28,32)(H,29,34)(H,36,37,38)/t17-,18-,19-,22+/m0/s1" B6Y InChIKey InChI 1.03 XQPCHNVZRFSEQT-ZVVDCOBXSA-N B6Y SMILES_CANONICAL CACTVS 3.385 "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O" B6Y SMILES CACTVS 3.385 "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" B6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)S(=O)(=O)O" B6Y SMILES "OpenEye OEToolkits" 2.0.6 "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B6Y "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-{[N-({[1-(tert-butoxycarbonyl)-4-ethylpiperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" B6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{R},2~{S})-2-[[(2~{S})-2-[[4-ethyl-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-4-yl]oxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B6Y "Create component" 2017-08-02 RCSB B6Y "Initial release" 2018-04-04 RCSB B6Y "Modify synonyms" 2021-03-01 PDBE B6Y "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id B6Y _pdbx_chem_comp_synonyms.name "bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id B6Y _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #