data_B79 # _chem_comp.id B79 _chem_comp.name "(8R,9S,10S)-10-[(dimethylamino)methyl]-N-(4-methoxyphenyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H38 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-22 _chem_comp.pdbx_modified_date 2022-03-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.680 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B79 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DPI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B79 N N1 N 0 1 N N N -8.097 -4.369 -22.849 0.321 -2.218 0.888 N B79 1 B79 C C1 C 0 1 N N N -14.462 -4.689 -22.652 -4.902 -4.579 -1.747 C B79 2 B79 O O1 O 0 1 N N N -13.472 -5.485 -22.015 -4.779 -3.490 -0.831 O B79 3 B79 C1 C2 C 0 1 Y N N -12.161 -5.200 -22.275 -3.524 -3.177 -0.408 C1 B79 4 B79 C10 C3 C 0 1 N N S -1.667 -6.014 -24.114 4.363 -0.005 -0.719 C10 B79 5 B79 C11 C4 C 0 1 N N N -0.630 -5.650 -25.185 4.116 1.364 -1.356 C11 B79 6 B79 C12 C5 C 0 1 N N N -0.810 -3.287 -25.770 4.234 2.567 -3.453 C12 B79 7 B79 C13 C6 C 0 1 N N N -0.652 -4.928 -27.478 6.153 1.319 -2.664 C13 B79 8 B79 C14 C7 C 0 1 N N S -2.751 -7.120 -24.310 3.159 -0.980 -0.818 C14 B79 9 B79 C15 C8 C 0 1 N N R -3.748 -6.103 -23.662 3.752 -1.489 0.479 C15 B79 10 B79 C16 C9 C 0 1 N N N -5.073 -5.699 -24.303 2.802 -1.748 1.688 C16 B79 11 B79 C17 C10 C 0 1 Y N N -3.015 -7.834 -25.617 1.809 -0.325 -0.674 C17 B79 12 B79 C18 C11 C 0 1 Y N N -1.971 -8.389 -26.343 1.728 1.022 -0.369 C18 B79 13 B79 C19 C12 C 0 1 Y N N -2.195 -8.963 -27.580 0.496 1.629 -0.235 C19 B79 14 B79 C2 C13 C 0 1 Y N N -11.638 -3.990 -21.866 -3.321 -2.064 0.394 C2 B79 15 B79 C20 C14 C 0 1 Y N N -3.464 -9.003 -28.121 -0.670 0.879 -0.408 C20 B79 16 B79 C21 C15 C 0 1 Y N N -4.533 -8.500 -27.371 -0.580 -0.481 -0.716 C21 B79 17 B79 C22 C16 C 0 1 Y N N -4.290 -7.918 -26.138 0.659 -1.072 -0.852 C22 B79 18 B79 C23 C17 C 0 1 N N N -3.692 -9.494 -29.453 -1.953 1.502 -0.270 C23 B79 19 B79 C24 C18 C 0 1 N N N -3.805 -9.972 -30.543 -3.004 2.013 -0.157 C24 B79 20 B79 C25 C19 C 0 1 Y N N -3.950 -10.455 -31.883 -4.286 2.635 -0.019 C25 B79 21 B79 C26 C20 C 0 1 Y N N -4.556 -11.678 -32.126 -5.453 1.886 -0.192 C26 B79 22 B79 C27 C21 C 0 1 Y N N -4.775 -12.097 -33.419 -6.684 2.492 -0.058 C27 B79 23 B79 C28 C22 C 0 1 Y N N -4.397 -11.321 -34.477 -6.766 3.839 0.248 C28 B79 24 B79 C29 C23 C 0 1 Y N N -3.845 -10.076 -34.254 -5.615 4.588 0.421 C29 B79 25 B79 C3 C24 C 0 1 Y N N -10.301 -3.710 -22.077 -2.047 -1.746 0.823 C3 B79 26 B79 C30 C25 C 0 1 Y N N -3.638 -9.629 -32.960 -4.377 3.994 0.295 C30 B79 27 B79 C31 C26 C 0 1 Y N N -10.020 -5.847 -23.121 -1.177 -3.658 -0.345 C31 B79 28 B79 C32 C27 C 0 1 Y N N -11.357 -6.127 -22.909 -2.451 -3.975 -0.774 C32 B79 29 B79 C4 C28 C 0 1 Y N N -9.479 -4.639 -22.699 -0.971 -2.541 0.453 C4 B79 30 B79 C5 C29 C 0 1 N N N -7.286 -4.928 -23.785 0.606 -0.961 1.280 C5 B79 31 B79 C6 C30 C 0 1 N N N -5.416 -4.038 -22.458 2.078 0.774 1.955 C6 B79 32 B79 C7 C31 C 0 1 N N N -4.800 -2.724 -22.921 3.059 1.003 3.112 C7 B79 33 B79 C8 C32 C 0 1 N N N -3.292 -2.725 -23.145 4.481 1.339 2.577 C8 B79 34 B79 C9 C33 C 0 1 N N N -2.576 -4.037 -22.864 5.022 0.150 1.746 C9 B79 35 B79 N1 N2 N 0 1 N N N -5.954 -4.877 -23.533 1.862 -0.638 1.650 N1 B79 36 B79 N2 N3 N 0 1 N N N -2.766 -5.020 -23.950 4.097 -0.052 0.690 N2 B79 37 B79 N3 N4 N 0 1 N N N -1.152 -4.656 -26.142 4.686 1.384 -2.710 N3 B79 38 B79 O1 O2 O 0 1 N N N -7.710 -5.472 -24.791 -0.269 -0.117 1.300 O1 B79 39 B79 H1 H1 H 0 1 N N N -7.685 -3.714 -22.215 1.010 -2.901 0.911 H1 B79 40 B79 H2 H2 H 0 1 N N N -15.462 -5.034 -22.349 -5.939 -4.667 -2.070 H2 B79 41 B79 H3 H3 H 0 1 N N N -14.332 -3.637 -22.357 -4.265 -4.399 -2.614 H3 B79 42 B79 H4 H4 H 0 1 N N N -14.359 -4.779 -23.743 -4.594 -5.503 -1.257 H4 B79 43 B79 H5 H5 H 0 1 N N N -1.158 -6.175 -23.152 5.317 -0.447 -1.006 H5 B79 44 B79 H6 H6 H 0 1 N N N -0.352 -6.561 -25.735 3.044 1.551 -1.410 H6 B79 45 B79 H7 H7 H 0 1 N N N 0.260 -5.234 -24.691 4.590 2.137 -0.751 H7 B79 46 B79 H8 H8 H 0 1 N N N -1.187 -3.076 -24.758 4.671 2.557 -4.452 H8 B79 47 B79 H9 H9 H 0 1 N N N 0.283 -3.165 -25.787 3.147 2.554 -3.532 H9 B79 48 B79 H10 H10 H 0 1 N N N -1.268 -2.588 -26.485 4.550 3.469 -2.928 H10 B79 49 B79 H11 H11 H 0 1 N N N -0.908 -5.959 -27.763 6.536 2.159 -2.086 H11 B79 50 B79 H12 H12 H 0 1 N N N -1.110 -4.227 -28.191 6.461 0.384 -2.195 H12 B79 51 B79 H13 H13 H 0 1 N N N 0.441 -4.804 -27.493 6.550 1.365 -3.678 H13 B79 52 B79 H14 H14 H 0 1 N N N -2.553 -7.892 -23.552 3.214 -1.685 -1.648 H14 B79 53 B79 H15 H15 H 0 1 N N N -3.858 -6.289 -22.583 4.578 -2.195 0.382 H15 B79 54 B79 H16 H16 H 0 1 N N N -4.839 -5.154 -25.229 2.279 -2.696 1.565 H16 B79 55 B79 H17 H17 H 0 1 N N N -5.616 -6.624 -24.549 3.364 -1.740 2.623 H17 B79 56 B79 H18 H18 H 0 1 N N N -0.971 -8.372 -25.936 2.630 1.600 -0.235 H18 B79 57 B79 H19 H19 H 0 1 N N N -1.367 -9.385 -28.130 0.434 2.680 0.004 H19 B79 58 B79 H20 H20 H 0 1 N N N -12.273 -3.263 -21.382 -4.158 -1.446 0.682 H20 B79 59 B79 H21 H21 H 0 1 N N N -5.542 -8.565 -27.751 -1.477 -1.066 -0.851 H21 B79 60 B79 H22 H22 H 0 1 N N N -5.118 -7.520 -25.571 0.730 -2.123 -1.090 H22 B79 61 B79 H23 H23 H 0 1 N N N -4.857 -12.304 -31.299 -5.390 0.835 -0.431 H23 B79 62 B79 H24 H24 H 0 1 N N N -5.251 -13.050 -33.598 -7.587 1.915 -0.192 H24 B79 63 B79 H25 H25 H 0 1 N N N -4.530 -11.681 -35.487 -7.733 4.310 0.347 H25 B79 64 B79 H26 H26 H 0 1 N N N -3.574 -9.449 -35.091 -5.686 5.639 0.659 H26 B79 65 B79 H27 H27 H 0 1 N N N -9.894 -2.763 -21.756 -1.889 -0.879 1.447 H27 B79 66 B79 H28 H28 H 0 1 N N N -3.235 -8.642 -32.786 -3.479 4.579 0.431 H28 B79 67 B79 H29 H29 H 0 1 N N N -9.392 -6.572 -23.618 -0.341 -4.280 -0.630 H29 B79 68 B79 H30 H30 H 0 1 N N N -11.772 -7.068 -23.238 -2.611 -4.845 -1.395 H30 B79 69 B79 H31 H31 H 0 1 N N N -6.236 -3.805 -21.763 1.121 1.227 2.213 H31 B79 70 B79 H32 H32 H 0 1 N N N -4.640 -4.613 -21.931 2.469 1.268 1.065 H32 B79 71 B79 H33 H33 H 0 1 N N N -5.025 -1.962 -22.160 2.702 1.831 3.725 H33 B79 72 B79 H34 H34 H 0 1 N N N -3.108 -2.460 -24.197 4.434 2.224 1.944 H34 B79 73 B79 H35 H35 H 0 1 N N N -2.969 -4.462 -21.929 6.010 0.391 1.354 H35 B79 74 B79 H36 H36 H 0 1 N N N -1.500 -3.837 -22.752 5.079 -0.743 2.370 H36 B79 75 B79 H39 H39 H 0 1 N N N -5.279 -2.446 -23.871 3.110 0.102 3.722 H39 B79 76 B79 H40 H40 H 0 1 N N N -2.854 -1.956 -22.491 5.153 1.521 3.415 H40 B79 77 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B79 C28 C29 DOUB Y N 1 B79 C28 C27 SING Y N 2 B79 C29 C30 SING Y N 3 B79 C27 C26 DOUB Y N 4 B79 C30 C25 DOUB Y N 5 B79 C26 C25 SING Y N 6 B79 C25 C24 SING N N 7 B79 C24 C23 TRIP N N 8 B79 C23 C20 SING N N 9 B79 C20 C19 DOUB Y N 10 B79 C20 C21 SING Y N 11 B79 C19 C18 SING Y N 12 B79 C13 N3 SING N N 13 B79 C21 C22 DOUB Y N 14 B79 C18 C17 DOUB Y N 15 B79 N3 C12 SING N N 16 B79 N3 C11 SING N N 17 B79 C22 C17 SING Y N 18 B79 C17 C14 SING N N 19 B79 C11 C10 SING N N 20 B79 O1 C5 DOUB N N 21 B79 C14 C10 SING N N 22 B79 C14 C15 SING N N 23 B79 C16 C15 SING N N 24 B79 C16 N1 SING N N 25 B79 C10 N2 SING N N 26 B79 N2 C15 SING N N 27 B79 N2 C9 SING N N 28 B79 C5 N1 SING N N 29 B79 C5 N SING N N 30 B79 N1 C6 SING N N 31 B79 C8 C7 SING N N 32 B79 C8 C9 SING N N 33 B79 C31 C32 DOUB Y N 34 B79 C31 C4 SING Y N 35 B79 C7 C6 SING N N 36 B79 C32 C1 SING Y N 37 B79 N C4 SING N N 38 B79 C4 C3 DOUB Y N 39 B79 C O SING N N 40 B79 C1 O SING N N 41 B79 C1 C2 DOUB Y N 42 B79 C3 C2 SING Y N 43 B79 N H1 SING N N 44 B79 C H2 SING N N 45 B79 C H3 SING N N 46 B79 C H4 SING N N 47 B79 C10 H5 SING N N 48 B79 C11 H6 SING N N 49 B79 C11 H7 SING N N 50 B79 C12 H8 SING N N 51 B79 C12 H9 SING N N 52 B79 C12 H10 SING N N 53 B79 C13 H11 SING N N 54 B79 C13 H12 SING N N 55 B79 C13 H13 SING N N 56 B79 C14 H14 SING N N 57 B79 C15 H15 SING N N 58 B79 C16 H16 SING N N 59 B79 C16 H17 SING N N 60 B79 C18 H18 SING N N 61 B79 C19 H19 SING N N 62 B79 C2 H20 SING N N 63 B79 C21 H21 SING N N 64 B79 C22 H22 SING N N 65 B79 C26 H23 SING N N 66 B79 C27 H24 SING N N 67 B79 C28 H25 SING N N 68 B79 C29 H26 SING N N 69 B79 C3 H27 SING N N 70 B79 C30 H28 SING N N 71 B79 C31 H29 SING N N 72 B79 C32 H30 SING N N 73 B79 C6 H31 SING N N 74 B79 C6 H32 SING N N 75 B79 C7 H33 SING N N 76 B79 C8 H34 SING N N 77 B79 C9 H35 SING N N 78 B79 C9 H36 SING N N 79 B79 C7 H39 SING N N 80 B79 C8 H40 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B79 InChI InChI 1.03 "InChI=1S/C33H38N4O2/c1-35(2)23-30-32(27-15-13-26(14-16-27)12-11-25-9-5-4-6-10-25)31-24-36(21-7-8-22-37(30)31)33(38)34-28-17-19-29(39-3)20-18-28/h4-6,9-10,13-20,30-32H,7-8,21-24H2,1-3H3,(H,34,38)/t30-,31+,32+/m1/s1" B79 InChIKey InChI 1.03 VKRCTZCBMKVHCK-RTOKGZNSSA-N B79 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(NC(=O)N2CCCCN3[C@H](CN(C)C)[C@@H]([C@@H]3C2)c4ccc(cc4)C#Cc5ccccc5)cc1" B79 SMILES CACTVS 3.385 "COc1ccc(NC(=O)N2CCCCN3[CH](CN(C)C)[CH]([CH]3C2)c4ccc(cc4)C#Cc5ccccc5)cc1" B79 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C[C@@H]1[C@@H]([C@H]2N1CCCCN(C2)C(=O)Nc3ccc(cc3)OC)c4ccc(cc4)C#Cc5ccccc5" B79 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CC1C(C2N1CCCCN(C2)C(=O)Nc3ccc(cc3)OC)c4ccc(cc4)C#Cc5ccccc5" # _pdbx_chem_comp_identifier.comp_id B79 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(8~{R},9~{S},10~{S})-10-[(dimethylamino)methyl]-~{N}-(4-methoxyphenyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B79 "Create component" 2020-12-22 PDBJ B79 "Initial release" 2022-03-23 RCSB ##