data_B7P # _chem_comp.id B7P _chem_comp.name "2'-deoxy-5-fluorouridine 5'-(tetrahydrogen triphosphate)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 F N2 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 5-FdUTP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-08-03 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.132 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B7P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WNY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B7P C22 C1 C 0 1 N N N 7.332 7.043 11.644 4.484 -0.837 -0.777 C22 B7P 1 B7P C28 C2 C 0 1 N N N 7.666 7.865 9.420 5.523 -1.003 1.335 C28 B7P 2 B7P O01 O1 O 0 1 N N N 3.573 4.286 10.786 3.534 4.010 1.267 O01 B7P 3 B7P C02 C3 C 0 1 N N S 4.474 5.321 11.069 3.296 3.051 0.235 C02 B7P 4 B7P C03 C4 C 0 1 N N N 4.984 5.911 9.738 4.496 2.081 0.109 C03 B7P 5 B7P C04 C5 C 0 1 N N R 5.381 7.354 10.096 4.014 0.859 0.932 C04 B7P 6 B7P O05 O2 O 0 1 N N N 4.622 7.657 11.256 2.602 0.789 0.635 O05 B7P 7 B7P C06 C6 C 0 1 N N R 3.766 6.541 11.678 2.111 2.139 0.609 C06 B7P 8 B7P C07 C7 C 0 1 N N N 3.632 6.417 13.171 1.003 2.270 -0.438 C07 B7P 9 B7P O08 O3 O 0 1 N N N 4.924 6.122 13.737 -0.136 1.512 -0.023 O08 B7P 10 B7P P09 P1 P 0 1 N N N 5.113 4.905 14.848 -1.491 1.423 -0.887 P09 B7P 11 B7P O10 O4 O 0 1 N N N 6.448 5.223 15.444 -1.994 2.788 -1.160 O10 B7P 12 B7P O11 O5 O 0 1 N N N 3.941 5.059 15.764 -1.191 0.673 -2.280 O11 B7P 13 B7P O12 O6 O 0 1 N N N 5.062 3.629 13.983 -2.601 0.598 -0.062 O12 B7P 14 B7P P13 P2 P 0 1 N N N 3.997 2.273 13.894 -4.194 0.416 -0.204 P13 B7P 15 B7P O14 O7 O 0 1 N N N 2.677 2.914 14.212 -4.934 1.750 0.312 O14 B7P 16 B7P O15 O8 O 0 1 N N N 4.326 1.925 12.477 -4.539 0.177 -1.623 O15 B7P 17 B7P O16 O9 O 0 1 N N N 4.354 1.076 14.831 -4.672 -0.839 0.684 O16 B7P 18 B7P P17 P3 P 0 1 N N N 4.104 0.822 16.405 -5.977 -1.782 0.677 P17 B7P 19 B7P O18 O10 O 0 1 N N N 5.495 0.501 16.927 -7.222 -0.979 1.306 O18 B7P 20 B7P O19 O11 O 0 1 N N N 3.150 -0.348 16.415 -6.295 -2.173 -0.715 O19 B7P 21 B7P O20 O12 O 0 1 N N N 3.532 2.077 17.054 -5.691 -3.101 1.554 O20 B7P 22 B7P N21 N1 N 0 1 N N N 6.810 7.451 10.428 4.695 -0.361 0.491 N21 B7P 23 B7P C23 C8 C 0 1 N N N 8.629 7.100 11.909 5.112 -1.961 -1.182 C23 B7P 24 B7P F24 F1 F 0 1 N N N 9.128 6.721 13.076 4.912 -2.447 -2.426 F24 B7P 25 B7P C25 C9 C 0 1 N N N 9.604 7.542 10.936 5.985 -2.624 -0.283 C25 B7P 26 B7P O26 O13 O 0 1 N N N 10.813 7.603 11.111 6.564 -3.640 -0.626 O26 B7P 27 B7P N27 N2 N 0 1 N N N 9.010 7.907 9.709 6.170 -2.120 0.954 N27 B7P 28 B7P O29 O14 O 0 1 N N N 7.303 8.188 8.294 5.700 -0.561 2.454 O29 B7P 29 B7P H1 H1 H 0 1 N N N 6.660 6.666 12.401 3.814 -0.318 -1.447 H1 B7P 30 B7P H2 H2 H 0 1 N N N 3.252 3.914 11.599 4.269 4.610 1.084 H2 B7P 31 B7P H3 H3 H 0 1 N N N 5.315 4.999 11.701 3.106 3.552 -0.714 H3 B7P 32 B7P H4 H4 H 0 1 N N N 4.190 5.902 8.977 4.666 1.806 -0.932 H4 B7P 33 B7P H5 H5 H 0 1 N N N 5.853 5.347 9.368 5.394 2.515 0.547 H5 B7P 34 B7P H6 H6 H 0 1 N N N 5.129 8.026 9.263 4.176 1.025 1.997 H6 B7P 35 B7P H7 H7 H 0 1 N N N 2.768 6.640 11.226 1.729 2.413 1.592 H7 B7P 36 B7P H8 H8 H 0 1 N N N 3.255 7.363 13.587 0.723 3.318 -0.542 H8 B7P 37 B7P H9 H9 H 0 1 N N N 2.930 5.605 13.412 1.361 1.892 -1.395 H9 B7P 38 B7P H10 H10 H 0 1 N N N 4.242 5.347 16.618 -0.858 -0.229 -2.178 H10 B7P 39 B7P H11 H11 H 0 1 N N N 2.178 3.027 13.411 -4.752 1.969 1.236 H11 B7P 40 B7P H12 H12 H 0 1 N N N 5.535 -0.413 17.182 -7.084 -0.690 2.219 H12 B7P 41 B7P H13 H13 H 0 1 N N N 2.650 1.902 17.361 -6.437 -3.716 1.594 H13 B7P 42 B7P H14 H14 H 0 1 N N N 9.621 8.225 8.984 6.763 -2.571 1.575 H14 B7P 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B7P O29 C28 DOUB N N 1 B7P C28 N27 SING N N 2 B7P C28 N21 SING N N 3 B7P N27 C25 SING N N 4 B7P C03 C04 SING N N 5 B7P C03 C02 SING N N 6 B7P C04 N21 SING N N 7 B7P C04 O05 SING N N 8 B7P N21 C22 SING N N 9 B7P O01 C02 SING N N 10 B7P C25 O26 DOUB N N 11 B7P C25 C23 SING N N 12 B7P C02 C06 SING N N 13 B7P O05 C06 SING N N 14 B7P C22 C23 DOUB N N 15 B7P C06 C07 SING N N 16 B7P C23 F24 SING N N 17 B7P O15 P13 DOUB N N 18 B7P C07 O08 SING N N 19 B7P O08 P09 SING N N 20 B7P P13 O12 SING N N 21 B7P P13 O14 SING N N 22 B7P P13 O16 SING N N 23 B7P O12 P09 SING N N 24 B7P O16 P17 SING N N 25 B7P P09 O10 DOUB N N 26 B7P P09 O11 SING N N 27 B7P P17 O19 DOUB N N 28 B7P P17 O18 SING N N 29 B7P P17 O20 SING N N 30 B7P C22 H1 SING N N 31 B7P O01 H2 SING N N 32 B7P C02 H3 SING N N 33 B7P C03 H4 SING N N 34 B7P C03 H5 SING N N 35 B7P C04 H6 SING N N 36 B7P C06 H7 SING N N 37 B7P C07 H8 SING N N 38 B7P C07 H9 SING N N 39 B7P O11 H10 SING N N 40 B7P O14 H11 SING N N 41 B7P O18 H12 SING N N 42 B7P O20 H13 SING N N 43 B7P N27 H14 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B7P SMILES ACDLabs 12.01 "C1=C(F)C(=O)NC(N1C2CC(O)C(O2)COP(=O)(O)OP(O)(OP(=O)(O)O)=O)=O" B7P InChI InChI 1.03 "InChI=1S/C9H14FN2O14P3/c10-4-2-12(9(15)11-8(4)14)7-1-5(13)6(24-7)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h2,5-7,13H,1,3H2,(H,19,20)(H,21,22)(H,11,14,15)(H2,16,17,18)/t5-,6+,7+/m0/s1" B7P InChIKey InChI 1.03 YQOCUTDPKPPQGA-RRKCRQDMSA-N B7P SMILES_CANONICAL CACTVS 3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(F)C(=O)NC2=O" B7P SMILES CACTVS 3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(F)C(=O)NC2=O" B7P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)F)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" B7P SMILES "OpenEye OEToolkits" 2.0.6 "C1C(C(OC1N2C=C(C(=O)NC2=O)F)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B7P "SYSTEMATIC NAME" ACDLabs 12.01 "2'-deoxy-5-fluorouridine 5'-(tetrahydrogen triphosphate)" B7P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},5~{R})-5-[5-fluoranyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B7P "Create component" 2017-08-03 RCSB B7P "Initial release" 2017-09-13 RCSB B7P "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id B7P _pdbx_chem_comp_synonyms.name 5-FdUTP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##