data_B8I # _chem_comp.id B8I _chem_comp.name "methyl 4-[4-[[6-(cyanomethyl)-2-[(1-methylpyrazol-4-yl)amino]-5-oxidanylidene-pyrido[4,3-d]pyrimidin-4-yl]amino]cyclohexyl]piperazine-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H32 N10 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-07 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 520.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B8I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QG1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B8I C1 C1 C 0 1 N N N 14.301 -39.118 -10.871 -4.569 5.393 -1.111 C1 B8I 1 B8I C2 C2 C 0 1 Y N N 5.494 -37.717 -8.328 -5.564 -2.921 -0.093 C2 B8I 2 B8I C3 C3 C 0 1 Y N N 5.061 -37.074 -6.259 -4.351 -4.792 -0.036 C3 B8I 3 B8I C7 C4 C 0 1 Y N N 9.266 -37.922 -9.647 -2.004 0.702 0.379 C7 B8I 4 B8I C8 C5 C 0 1 Y N N 8.484 -37.663 -7.489 -3.141 -1.309 0.199 C8 B8I 5 B8I C9 C6 C 0 1 N N N 12.046 -37.504 -7.217 -5.690 1.314 0.036 C9 B8I 6 B8I C10 C7 C 0 1 N N N 13.094 -37.629 -8.023 -5.703 2.658 0.080 C10 B8I 7 B8I C11 C8 C 0 1 N N N 11.734 -37.929 -10.013 -3.346 2.828 0.319 C11 B8I 8 B8I C12 C9 C 0 1 N N N 1.040 -38.884 -16.076 8.599 -0.653 -0.439 C12 B8I 9 B8I C13 C10 C 0 1 N N N 6.243 -38.869 -13.395 2.792 0.788 1.478 C13 B8I 10 B8I C14 C11 C 0 1 N N N 5.746 -36.677 -12.229 2.299 -0.381 -0.674 C14 B8I 11 B8I C15 C12 C 0 1 N N N 7.606 -38.874 -12.738 1.465 1.541 1.373 C15 B8I 12 B8I C16 C13 C 0 1 N N N 7.165 -36.638 -11.697 0.972 0.372 -0.779 C16 B8I 13 B8I C19 C14 C 0 1 N N N 3.406 -38.344 -13.474 5.564 0.513 0.977 C19 B8I 14 B8I C20 C15 C 0 1 N N N 4.368 -37.638 -15.574 5.127 -0.554 -1.157 C20 B8I 15 B8I C21 C16 C 0 1 N N N 5.691 -37.454 -13.551 3.318 0.481 0.074 C21 B8I 16 B8I C22 C17 C 0 1 N N N 7.635 -38.072 -11.449 0.447 0.679 0.625 C22 B8I 17 B8I C24 C18 C 0 1 N N N -1.048 -39.570 -15.385 10.832 0.081 -0.024 C24 B8I 18 B8I N26 N1 N 0 1 N N N 14.387 -40.127 -11.441 -4.490 5.807 -2.166 N26 B8I 19 B8I N29 N2 N 0 1 Y N N 8.245 -37.822 -8.795 -2.010 -0.627 0.333 N29 B8I 20 B8I C4 C19 C 0 1 Y N N 10.552 -37.801 -9.158 -3.235 1.375 0.280 C4 B8I 21 B8I C5 C20 C 0 1 Y N N 6.088 -37.469 -7.070 -4.265 -3.438 0.018 C5 B8I 22 B8I C6 C21 C 0 1 Y N N 10.719 -37.638 -7.794 -4.417 0.607 0.138 C6 B8I 23 B8I C17 C22 C 0 1 N N N 2.008 -38.053 -13.961 6.809 -0.349 1.210 C17 B8I 24 B8I C18 C23 C 0 1 N N N 2.984 -37.382 -16.159 6.355 -1.461 -1.011 C18 B8I 25 B8I C23 C24 C 0 1 N N N 2.620 -36.751 -6.534 -6.214 -6.469 -0.274 C23 B8I 26 B8I C25 C25 C 0 1 N N N 14.186 -37.867 -10.119 -4.670 4.857 0.256 C25 B8I 27 B8I N27 N3 N 0 1 Y N N 4.163 -37.472 -8.301 -6.398 -3.922 -0.208 N27 B8I 28 B8I N28 N4 N 0 1 Y N N 9.700 -37.576 -6.930 -4.325 -0.719 0.103 N28 B8I 29 B8I N30 N5 N 0 1 Y N N 3.939 -37.107 -7.027 -5.664 -5.114 -0.175 N30 B8I 30 B8I N31 N6 N 0 1 N N N 12.967 -37.826 -9.363 -4.565 3.396 0.217 N31 B8I 31 B8I N32 N7 N 0 1 N N N 1.930 -38.050 -15.413 7.306 -0.815 -0.094 N32 B8I 32 B8I N33 N8 N 0 1 N N N 4.337 -37.409 -14.126 4.592 -0.242 0.175 N33 B8I 33 B8I N34 N9 N 0 1 N N N 7.385 -37.555 -6.652 -3.083 -2.688 0.159 N34 B8I 34 B8I N35 N10 N 0 1 N N N 9.039 -38.078 -11.023 -0.824 1.400 0.524 N35 B8I 35 B8I O36 O1 O 0 1 N N N 11.597 -38.162 -11.204 -2.351 3.520 0.440 O36 B8I 36 B8I O37 O2 O 0 1 N N N 0.868 -38.922 -17.291 8.992 -1.043 -1.521 O37 B8I 37 B8I O38 O3 O 0 1 N N N 0.365 -39.715 -15.229 9.455 -0.060 0.414 O38 B8I 38 B8I H1 H1 H 0 1 N N N 6.033 -38.058 -9.199 -5.831 -1.874 -0.080 H1 B8I 39 B8I H2 H2 H 0 1 N N N 5.127 -36.793 -5.218 -3.526 -5.487 0.022 H2 B8I 40 B8I H3 H3 H 0 1 N N N 12.176 -37.308 -6.163 -6.613 0.762 -0.073 H3 B8I 41 B8I H4 H4 H 0 1 N N N 14.085 -37.572 -7.598 -6.650 3.172 0.004 H4 B8I 42 B8I H5 H5 H 0 1 N N N 5.548 -39.456 -12.776 3.518 1.402 2.011 H5 B8I 43 B8I H6 H6 H 0 1 N N N 6.326 -39.330 -14.390 2.638 -0.145 2.020 H6 B8I 44 B8I H7 H7 H 0 1 N N N 5.394 -35.649 -12.398 2.145 -1.314 -0.132 H7 B8I 45 B8I H8 H8 H 0 1 N N N 5.096 -37.170 -11.491 2.673 -0.600 -1.674 H8 B8I 46 B8I H9 H9 H 0 1 N N N 7.885 -39.914 -12.512 1.091 1.760 2.373 H9 B8I 47 B8I H10 H10 H 0 1 N N N 8.336 -38.442 -13.438 1.619 2.474 0.831 H10 B8I 48 B8I H11 H11 H 0 1 N N N 7.823 -36.155 -12.434 1.126 1.305 -1.321 H11 B8I 49 B8I H12 H12 H 0 1 N N N 7.192 -36.072 -10.754 0.247 -0.242 -1.312 H12 B8I 50 B8I H13 H13 H 0 1 N N N 3.680 -39.378 -13.731 5.119 0.775 1.936 H13 B8I 51 B8I H14 H14 H 0 1 N N N 3.453 -38.212 -12.383 5.846 1.422 0.446 H14 B8I 52 B8I H15 H15 H 0 1 N N N 4.664 -38.678 -15.774 5.415 0.370 -1.658 H15 B8I 53 B8I H16 H16 H 0 1 N N N 5.094 -36.954 -16.038 4.365 -1.065 -1.745 H16 B8I 54 B8I H17 H17 H 0 1 N N N 6.360 -36.931 -14.250 3.471 1.414 -0.468 H17 B8I 55 B8I H18 H18 H 0 1 N N N 6.995 -38.550 -10.693 0.293 -0.254 1.167 H18 B8I 56 B8I H19 H19 H 0 1 N N N -1.566 -40.250 -14.692 11.252 -0.905 -0.222 H19 B8I 57 B8I H20 H20 H 0 1 N N N -1.337 -38.532 -15.164 10.864 0.679 -0.935 H20 B8I 58 B8I H21 H21 H 0 1 N N N -1.330 -39.817 -16.419 11.413 0.574 0.755 H21 B8I 59 B8I H22 H22 H 0 1 N N N 1.699 -37.066 -13.586 7.578 0.244 1.704 H22 B8I 60 B8I H23 H23 H 0 1 N N N 1.327 -38.824 -13.570 6.550 -1.205 1.833 H23 B8I 61 B8I H24 H24 H 0 1 N N N 2.792 -36.299 -16.148 6.051 -2.425 -0.604 H24 B8I 62 B8I H25 H25 H 0 1 N N N 2.967 -37.747 -17.197 6.824 -1.602 -1.985 H25 B8I 63 B8I H26 H26 H 0 1 N N N 1.888 -36.833 -7.351 -6.249 -6.771 -1.321 H26 B8I 64 B8I H27 H27 H 0 1 N N N 2.337 -37.433 -5.719 -5.580 -7.159 0.282 H27 B8I 65 B8I H28 H28 H 0 1 N N N 2.636 -35.717 -6.158 -7.221 -6.483 0.143 H28 B8I 66 B8I H29 H29 H 0 1 N N N 15.039 -37.783 -9.429 -3.864 5.263 0.867 H29 B8I 67 B8I H30 H30 H 0 1 N N N 14.200 -37.022 -10.824 -5.630 5.141 0.688 H30 B8I 68 B8I H32 H32 H 0 1 N N N 7.555 -37.539 -5.667 -2.227 -3.139 0.227 H32 B8I 69 B8I H33 H33 H 0 1 N N N 9.439 -38.951 -11.302 -0.836 2.369 0.559 H33 B8I 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B8I O37 C12 DOUB N N 1 B8I C18 C20 SING N N 2 B8I C18 N32 SING N N 3 B8I C12 N32 SING N N 4 B8I C12 O38 SING N N 5 B8I C20 N33 SING N N 6 B8I N32 C17 SING N N 7 B8I C24 O38 SING N N 8 B8I N33 C21 SING N N 9 B8I N33 C19 SING N N 10 B8I C17 C19 SING N N 11 B8I C21 C13 SING N N 12 B8I C21 C14 SING N N 13 B8I C13 C15 SING N N 14 B8I C15 C22 SING N N 15 B8I C14 C16 SING N N 16 B8I C16 C22 SING N N 17 B8I C22 N35 SING N N 18 B8I N26 C1 TRIP N N 19 B8I O36 C11 DOUB N N 20 B8I N35 C7 SING N N 21 B8I C1 C25 SING N N 22 B8I C25 N31 SING N N 23 B8I C11 N31 SING N N 24 B8I C11 C4 SING N N 25 B8I C7 C4 DOUB Y N 26 B8I C7 N29 SING Y N 27 B8I N31 C10 SING N N 28 B8I C4 C6 SING Y N 29 B8I N29 C8 DOUB Y N 30 B8I C2 N27 DOUB Y N 31 B8I C2 C5 SING Y N 32 B8I N27 N30 SING Y N 33 B8I C10 C9 DOUB N N 34 B8I C6 C9 SING N N 35 B8I C6 N28 DOUB Y N 36 B8I C8 N28 SING Y N 37 B8I C8 N34 SING N N 38 B8I C5 N34 SING N N 39 B8I C5 C3 DOUB Y N 40 B8I N30 C23 SING N N 41 B8I N30 C3 SING Y N 42 B8I C2 H1 SING N N 43 B8I C3 H2 SING N N 44 B8I C9 H3 SING N N 45 B8I C10 H4 SING N N 46 B8I C13 H5 SING N N 47 B8I C13 H6 SING N N 48 B8I C14 H7 SING N N 49 B8I C14 H8 SING N N 50 B8I C15 H9 SING N N 51 B8I C15 H10 SING N N 52 B8I C16 H11 SING N N 53 B8I C16 H12 SING N N 54 B8I C19 H13 SING N N 55 B8I C19 H14 SING N N 56 B8I C20 H15 SING N N 57 B8I C20 H16 SING N N 58 B8I C21 H17 SING N N 59 B8I C22 H18 SING N N 60 B8I C24 H19 SING N N 61 B8I C24 H20 SING N N 62 B8I C24 H21 SING N N 63 B8I C17 H22 SING N N 64 B8I C17 H23 SING N N 65 B8I C18 H24 SING N N 66 B8I C18 H25 SING N N 67 B8I C23 H26 SING N N 68 B8I C23 H27 SING N N 69 B8I C23 H28 SING N N 70 B8I C25 H29 SING N N 71 B8I C25 H30 SING N N 72 B8I N34 H32 SING N N 73 B8I N35 H33 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B8I InChI InChI 1.06 "InChI=1S/C25H32N10O3/c1-32-16-18(15-27-32)29-24-30-20-7-9-34(10-8-26)23(36)21(20)22(31-24)28-17-3-5-19(6-4-17)33-11-13-35(14-12-33)25(37)38-2/h7,9,15-17,19H,3-6,10-14H2,1-2H3,(H2,28,29,30,31)/t17-,19-" B8I InChIKey InChI 1.06 HGLZLKIEOLRRSD-UAPYVXQJSA-N B8I SMILES_CANONICAL CACTVS 3.385 "COC(=O)N1CCN(CC1)[C@@H]2CC[C@H](CC2)Nc3nc(Nc4cnn(C)c4)nc5C=CN(CC#N)C(=O)c35" B8I SMILES CACTVS 3.385 "COC(=O)N1CCN(CC1)[CH]2CC[CH](CC2)Nc3nc(Nc4cnn(C)c4)nc5C=CN(CC#N)C(=O)c35" B8I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)Nc2nc3c(c(n2)NC4CCC(CC4)N5CCN(CC5)C(=O)OC)C(=O)N(C=C3)CC#N" B8I SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)Nc2nc3c(c(n2)NC4CCC(CC4)N5CCN(CC5)C(=O)OC)C(=O)N(C=C3)CC#N" # _pdbx_chem_comp_identifier.comp_id B8I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 4-[4-[[6-(cyanomethyl)-2-[(1-methylpyrazol-4-yl)amino]-5-oxidanylidene-pyrido[4,3-d]pyrimidin-4-yl]amino]cyclohexyl]piperazine-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B8I "Create component" 2021-12-07 PDBE B8I "Initial release" 2022-05-04 RCSB B8I "Modify descriptor" 2022-08-22 RCSB #