data_B8K # _chem_comp.id B8K _chem_comp.name "7-acetyl, guanosine-5'-monophosphate" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H18 N5 O9 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-25 _chem_comp.pdbx_modified_date 2019-05-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 407.273 _chem_comp.one_letter_code G _chem_comp.three_letter_code B8K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B8K N2 N1 N 0 1 N N N 234.396 253.071 246.227 -0.893 2.580 -2.767 N2 B8K 1 B8K C2 C1 C 0 1 N N N 234.571 252.597 247.471 -1.634 1.913 -1.825 C2 B8K 2 B8K C8 C2 C 0 1 N N N 236.933 251.089 251.149 -2.601 -1.293 1.284 C8 B8K 3 B8K N1 N2 N 0 1 N N N 233.505 252.408 248.270 -2.878 2.369 -1.513 N1 B8K 4 B8K C6 C3 C 0 1 N N N 233.599 251.950 249.521 -3.621 1.725 -0.589 C6 B8K 5 B8K C5 C4 C 0 1 N N N 234.947 251.661 249.996 -3.087 0.588 0.035 C5 B8K 6 B8K C4 C5 C 0 1 N N N 236.068 251.889 249.082 -1.815 0.163 -0.318 C4 B8K 7 B8K N3 N3 N 0 1 N N N 235.835 252.360 247.848 -1.128 0.845 -1.249 N3 B8K 8 B8K "C1'" C6 C 0 1 N N R 238.521 251.608 249.378 -0.211 -1.703 0.308 "C1'" B8K 9 B8K "C2'" C7 C 0 1 N N R 239.362 252.509 250.249 -0.026 -2.271 -1.116 "C2'" B8K 10 B8K "C3'" C8 C 0 1 N N S 240.750 251.980 249.952 1.488 -2.127 -1.385 "C3'" B8K 11 B8K "C4'" C9 C 0 1 N N R 240.507 250.483 249.836 2.040 -1.488 -0.091 "C4'" B8K 12 B8K "C5'" C10 C 0 1 N N N 240.812 249.669 251.065 3.148 -0.487 -0.423 "C5'" B8K 13 B8K N7 N4 N 0 1 N N N 235.497 251.209 251.120 -3.621 -0.270 1.017 N7 B8K 14 B8K N9 N5 N 0 1 N N N 237.124 251.548 249.787 -1.473 -0.966 0.405 N9 B8K 15 B8K "O2'" O1 O 0 1 N N N 239.171 253.862 249.925 -0.417 -3.645 -1.162 "O2'" B8K 16 B8K "O3'" O2 O 0 1 N N N 241.158 252.474 248.683 2.082 -3.408 -1.608 "O3'" B8K 17 B8K "O4'" O3 O 0 1 N N N 239.105 250.335 249.499 0.909 -0.810 0.497 "O4'" B8K 18 B8K "O5'" O4 O 0 1 N N N 239.630 249.258 251.742 3.724 0.005 0.790 "O5'" B8K 19 B8K O6 O5 O 0 1 N N N 232.599 251.782 250.223 -4.738 2.126 -0.301 O6 B8K 20 B8K OP1 O6 O 0 1 N N N 240.260 246.809 251.696 6.055 0.577 0.010 OP1 B8K 21 B8K OP3 O7 O 0 1 N N N 237.989 247.667 252.660 4.405 2.477 0.208 OP3 B8K 22 B8K P P1 P 0 1 N N N 239.101 247.760 251.664 4.922 1.080 0.819 P B8K 23 B8K C71 C11 C 0 1 N N N 234.825 250.855 252.275 -4.832 -0.171 1.599 C71 B8K 24 B8K C72 C12 C 0 1 N N N 233.891 249.686 252.341 -5.300 -1.240 2.552 C72 B8K 25 B8K O71 O8 O 0 1 N N N 235.028 251.483 253.295 -5.546 0.779 1.355 O71 B8K 26 B8K H1 H1 H 0 1 N N N 235.187 253.229 245.636 -0.006 2.262 -3.000 H1 B8K 27 B8K H2 H2 H 0 1 N N N 233.474 253.266 245.891 -1.256 3.366 -3.202 H2 B8K 28 B8K H3 H3 H 0 1 N N N 237.274 250.055 251.305 -2.289 -1.251 2.328 H3 B8K 29 B8K H4 H4 H 0 1 N N N 232.597 252.621 247.909 -3.230 3.157 -1.956 H4 B8K 30 B8K H5 H5 H 0 1 N N N 238.585 251.959 248.338 -0.184 -2.506 1.045 H5 B8K 31 B8K H6 H6 H 0 1 N N N 239.121 252.322 251.306 -0.600 -1.688 -1.837 H6 B8K 32 B8K H7 H7 H 0 1 N N N 241.459 252.216 250.760 1.663 -1.472 -2.239 H7 B8K 33 B8K H8 H8 H 0 1 N N N 241.119 250.100 249.006 2.415 -2.259 0.582 H8 B8K 34 B8K H9 H9 H 0 1 N N N 241.379 248.775 250.766 3.918 -0.980 -1.016 H9 B8K 35 B8K H10 H10 H 0 1 N N N 241.420 250.277 251.751 2.729 0.345 -0.989 H10 B8K 36 B8K H11 H11 H 0 1 N N N 239.712 254.402 250.489 -0.322 -4.052 -2.033 H11 B8K 37 B8K H12 H12 H 0 1 N N N 241.313 253.409 248.742 1.727 -3.877 -2.375 H12 B8K 38 B8K H14 H14 H 0 1 N N N 238.158 246.948 253.258 3.661 2.865 0.689 H14 B8K 39 B8K H15 H15 H 0 1 N N N 233.513 249.575 253.368 -4.498 -1.959 2.714 H15 B8K 40 B8K H16 H16 H 0 1 N N N 233.047 249.852 251.656 -5.577 -0.784 3.502 H16 B8K 41 B8K H17 H17 H 0 1 N N N 234.427 248.772 252.047 -6.166 -1.751 2.129 H17 B8K 42 B8K H18 H18 H 0 1 N N N 237.404 251.747 251.894 -2.990 -2.284 1.048 H18 B8K 43 B8K OP2 OP3 O 0 1 N N N ? ? ? 5.405 1.304 2.338 OP2 B8K 44 B8K H13 H13 H 0 1 N N N ? ? ? 6.127 1.941 2.431 H13 B8K 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B8K N2 C2 SING N N 1 B8K C2 N3 DOUB N N 2 B8K C2 N1 SING N N 3 B8K N3 C4 SING N N 4 B8K N1 C6 SING N N 5 B8K "O3'" "C3'" SING N N 6 B8K C4 N9 SING N N 7 B8K C4 C5 DOUB N N 8 B8K "C1'" "O4'" SING N N 9 B8K "C1'" N9 SING N N 10 B8K "C1'" "C2'" SING N N 11 B8K "O4'" "C4'" SING N N 12 B8K C6 C5 SING N N 13 B8K C6 O6 DOUB N N 14 B8K N9 C8 SING N N 15 B8K "C4'" "C3'" SING N N 16 B8K "C4'" "C5'" SING N N 17 B8K "O2'" "C2'" SING N N 18 B8K "C3'" "C2'" SING N N 19 B8K C5 N7 SING N N 20 B8K "C5'" "O5'" SING N N 21 B8K N7 C8 SING N N 22 B8K N7 C71 SING N N 23 B8K P OP1 DOUB N N 24 B8K P "O5'" SING N N 25 B8K P OP3 SING N N 26 B8K C71 C72 SING N N 27 B8K C71 O71 DOUB N N 28 B8K N2 H1 SING N N 29 B8K N2 H2 SING N N 30 B8K C8 H3 SING N N 31 B8K N1 H4 SING N N 32 B8K "C1'" H5 SING N N 33 B8K "C2'" H6 SING N N 34 B8K "C3'" H7 SING N N 35 B8K "C4'" H8 SING N N 36 B8K "C5'" H9 SING N N 37 B8K "C5'" H10 SING N N 38 B8K "O2'" H11 SING N N 39 B8K "O3'" H12 SING N N 40 B8K OP3 H14 SING N N 41 B8K C72 H15 SING N N 42 B8K C72 H16 SING N N 43 B8K C72 H17 SING N N 44 B8K C8 H18 SING N N 45 B8K P OP2 SING N N 46 B8K OP2 H13 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B8K InChI InChI 1.03 "InChI=1S/C12H18N5O9P/c1-4(18)16-3-17(9-6(16)10(21)15-12(13)14-9)11-8(20)7(19)5(26-11)2-25-27(22,23)24/h5,7-8,11,19-20H,2-3H2,1H3,(H2,22,23,24)(H3,13,14,15,21)/t5-,7-,8-,11-/m1/s1" B8K InChIKey InChI 1.03 DXTUMKLYEDQWDN-IOSLPCCCSA-N B8K SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C3=C1C(=O)NC(=N3)N" B8K SMILES CACTVS 3.385 "CC(=O)N1CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C3=C1C(=O)NC(=N3)N" B8K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" B8K SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id B8K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B8K "Create component" 2017-09-25 EBI B8K "Initial release" 2018-01-24 RCSB B8K "Modify one letter code" 2019-05-06 EBI ##