data_B8O
#
_chem_comp.id B8O
_chem_comp.name "2-{[(3R,5R)-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methylpiperidin-3-yl]amino}-3-methyl-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H25 N5 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-01-22
_chem_comp.pdbx_modified_date 2019-04-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 395.455
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B8O
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6J3P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B8O C7 C1 C 0 1 N N R -14.834 -6.194 15.003 -1.617 -0.879 -0.018 C7 B8O 1
B8O C8 C2 C 0 1 N N N -14.828 -7.667 15.338 -1.447 -2.075 0.921 C8 B8O 2
B8O C6 C3 C 0 1 Y N N -11.066 -5.650 14.289 -5.136 0.196 -0.885 C6 B8O 3
B8O C10 C4 C 0 1 N N N -16.679 -8.098 14.232 0.906 -1.580 1.219 C10 B8O 4
B8O N9 N1 N 0 1 N N N -16.041 -8.224 15.390 -0.077 -2.593 0.813 N9 B8O 5
B8O C5 C5 C 0 1 Y N N -12.513 -6.197 14.385 -3.847 -0.303 -0.997 C5 B8O 6
B8O C4 C6 C 0 1 Y N N -13.459 -5.565 14.944 -3.017 -0.335 0.108 C4 B8O 7
B8O C1 C7 C 0 1 Y N N -10.914 -4.354 14.889 -5.592 0.661 0.343 C1 B8O 8
B8O C3 C8 C 0 1 Y N N -13.345 -4.482 15.468 -3.470 0.130 1.328 C3 B8O 9
B8O C2 C9 C 0 1 Y N N -12.234 -3.831 15.522 -4.754 0.628 1.448 C2 B8O 10
B8O C11 C10 C 0 1 N N R -16.882 -6.628 13.842 0.806 -0.369 0.290 C11 B8O 11
B8O C12 C11 C 0 1 N N N -15.537 -6.022 13.675 -0.610 0.210 0.363 C12 B8O 12
B8O C14 C12 C 0 1 N N N -16.044 -9.468 15.716 0.083 -3.826 1.596 C14 B8O 13
B8O C15 C13 C 0 1 N N N -18.605 -5.620 12.504 3.073 0.584 0.266 C15 B8O 14
B8O C17 C14 C 0 1 N N N -20.370 -4.607 10.955 5.243 1.502 0.255 C17 B8O 15
B8O C18 C15 C 0 1 Y N N -20.648 -3.733 11.992 5.641 0.459 -0.603 C18 B8O 16
B8O C19 C16 C 0 1 Y N N -19.885 -3.850 13.251 4.693 -0.498 -0.983 C19 B8O 17
B8O C22 C17 C 0 1 Y N N -21.357 -2.175 13.379 6.640 -1.010 -1.947 C22 B8O 18
B8O C23 C18 C 0 1 Y N N -20.500 -2.738 14.028 5.357 -1.410 -1.832 C23 B8O 19
B8O C26 C19 C 0 1 N N N -8.845 -5.507 13.410 -7.342 0.386 -1.750 C26 B8O 20
B8O C27 C20 C 0 1 N N N -8.742 -4.405 14.366 -7.536 1.514 -0.728 C27 B8O 21
B8O C29 C21 C 0 1 N N N -19.008 -6.516 10.203 3.515 2.612 1.565 C29 B8O 22
B8O N13 N2 N 0 1 N N N -17.638 -6.577 12.634 1.773 0.649 0.707 N13 B8O 23
B8O N16 N3 N 0 1 N N N -19.382 -5.535 11.211 3.959 1.539 0.672 N16 B8O 24
B8O N20 N4 N 0 1 N N N -18.970 -4.718 13.484 3.428 -0.397 -0.528 N20 B8O 25
B8O N21 N5 N 0 1 Y N N -21.508 -2.638 12.258 6.832 0.117 -1.207 N21 B8O 26
B8O O24 O1 O 0 1 N N N -21.002 -4.644 9.824 6.041 2.352 0.613 O24 B8O 27
B8O O25 O2 O 0 1 N N N -10.014 -6.298 13.599 -5.938 0.228 -1.983 O25 B8O 28
B8O O28 O3 O 0 1 N N N -9.727 -3.769 14.880 -6.855 1.148 0.478 O28 B8O 29
B8O H1 H1 H 0 1 N N N -15.419 -5.669 15.772 -1.441 -1.195 -1.046 H1 B8O 30
B8O H2 H2 H 0 1 N N N -14.240 -8.192 14.571 -1.638 -1.762 1.947 H2 B8O 31
B8O H3 H3 H 0 1 N N N -14.348 -7.795 16.319 -2.154 -2.858 0.643 H3 B8O 32
B8O H4 H4 H 0 1 N N N -17.663 -8.582 14.315 0.704 -1.269 2.244 H4 B8O 33
B8O H5 H5 H 0 1 N N N -16.091 -8.595 13.447 1.909 -2.003 1.158 H5 B8O 34
B8O H7 H7 H 0 1 N N N -12.726 -7.164 13.954 -3.491 -0.668 -1.950 H7 B8O 35
B8O H8 H8 H 0 1 N N N -14.221 -4.036 15.915 -2.819 0.104 2.190 H8 B8O 36
B8O H9 H9 H 0 1 N N N -12.219 -2.878 16.030 -5.105 0.990 2.403 H9 B8O 37
B8O H10 H10 H 0 1 N N N -17.419 -6.115 14.653 1.021 -0.677 -0.734 H10 B8O 38
B8O H11 H11 H 0 1 N N N -14.981 -6.539 12.879 -0.698 1.046 -0.330 H11 B8O 39
B8O H12 H12 H 0 1 N N N -15.627 -4.954 13.426 -0.811 0.553 1.378 H12 B8O 40
B8O H13 H13 H 0 1 N N N -15.520 -9.598 16.674 -0.607 -4.583 1.225 H13 B8O 41
B8O H14 H14 H 0 1 N N N -17.082 -9.818 15.816 1.107 -4.187 1.499 H14 B8O 42
B8O H15 H15 H 0 1 N N N -15.533 -10.052 14.937 -0.132 -3.621 2.645 H15 B8O 43
B8O H16 H16 H 0 1 N N N -21.932 -1.343 13.757 7.398 -1.508 -2.533 H16 B8O 44
B8O H17 H17 H 0 1 N N N -20.220 -2.468 15.036 4.917 -2.275 -2.304 H17 B8O 45
B8O H18 H18 H 0 1 N N N -7.962 -6.153 13.523 -7.756 -0.542 -1.356 H18 B8O 46
B8O H19 H19 H 0 1 N N N -8.865 -5.088 12.393 -7.843 0.646 -2.683 H19 B8O 47
B8O H20 H20 H 0 1 N N N -8.183 -4.814 15.221 -7.116 2.441 -1.118 H20 B8O 48
B8O H21 H21 H 0 1 N N N -8.134 -3.640 13.862 -8.599 1.647 -0.525 H21 B8O 49
B8O H22 H22 H 0 1 N N N -18.208 -7.161 10.597 4.352 3.276 1.779 H22 B8O 50
B8O H23 H23 H 0 1 N N N -19.883 -7.132 9.948 2.716 3.177 1.084 H23 B8O 51
B8O H24 H24 H 0 1 N N N -18.650 -5.997 9.302 3.145 2.181 2.495 H24 B8O 52
B8O H25 H25 H 0 1 N N N -17.464 -7.229 11.896 1.496 1.369 1.295 H25 B8O 53
B8O H26 H26 H 0 1 N N N -22.169 -2.282 11.598 7.669 0.600 -1.121 H26 B8O 54
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B8O O24 C17 DOUB N N 1
B8O C29 N16 SING N N 2
B8O C17 N16 SING N N 3
B8O C17 C18 SING N N 4
B8O N16 C15 SING N N 5
B8O C18 N21 SING Y N 6
B8O C18 C19 DOUB Y N 7
B8O N21 C22 SING Y N 8
B8O C15 N13 SING N N 9
B8O C15 N20 DOUB N N 10
B8O N13 C11 SING N N 11
B8O C19 N20 SING N N 12
B8O C19 C23 SING Y N 13
B8O C22 C23 DOUB Y N 14
B8O C26 O25 SING N N 15
B8O C26 C27 SING N N 16
B8O O25 C6 SING N N 17
B8O C12 C11 SING N N 18
B8O C12 C7 SING N N 19
B8O C11 C10 SING N N 20
B8O C10 N9 SING N N 21
B8O C6 C5 DOUB Y N 22
B8O C6 C1 SING Y N 23
B8O C27 O28 SING N N 24
B8O C5 C4 SING Y N 25
B8O O28 C1 SING N N 26
B8O C1 C2 DOUB Y N 27
B8O C4 C7 SING N N 28
B8O C4 C3 DOUB Y N 29
B8O C7 C8 SING N N 30
B8O C8 N9 SING N N 31
B8O N9 C14 SING N N 32
B8O C3 C2 SING Y N 33
B8O C7 H1 SING N N 34
B8O C8 H2 SING N N 35
B8O C8 H3 SING N N 36
B8O C10 H4 SING N N 37
B8O C10 H5 SING N N 38
B8O C5 H7 SING N N 39
B8O C3 H8 SING N N 40
B8O C2 H9 SING N N 41
B8O C11 H10 SING N N 42
B8O C12 H11 SING N N 43
B8O C12 H12 SING N N 44
B8O C14 H13 SING N N 45
B8O C14 H14 SING N N 46
B8O C14 H15 SING N N 47
B8O C22 H16 SING N N 48
B8O C23 H17 SING N N 49
B8O C26 H18 SING N N 50
B8O C26 H19 SING N N 51
B8O C27 H20 SING N N 52
B8O C27 H21 SING N N 53
B8O C29 H22 SING N N 54
B8O C29 H23 SING N N 55
B8O C29 H24 SING N N 56
B8O N13 H25 SING N N 57
B8O N21 H26 SING N N 58
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B8O SMILES ACDLabs 12.01 "C1(CN(CC(C1)NC2=Nc3c(C(N2C)=O)ncc3)C)c4cc5c(cc4)OCCO5"
B8O InChI InChI 1.03 "InChI=1S/C21H25N5O3/c1-25-11-14(13-3-4-17-18(10-13)29-8-7-28-17)9-15(12-25)23-21-24-16-5-6-22-19(16)20(27)26(21)2/h3-6,10,14-15,22H,7-9,11-12H2,1-2H3,(H,23,24)/t14-,15+/m0/s1"
B8O InChIKey InChI 1.03 PUFPGLSWMMJNSE-LSDHHAIUSA-N
B8O SMILES_CANONICAL CACTVS 3.385 "CN1C[C@@H](C[C@@H](C1)c2ccc3OCCOc3c2)NC4=Nc5cc[nH]c5C(=O)N4C"
B8O SMILES CACTVS 3.385 "CN1C[CH](C[CH](C1)c2ccc3OCCOc3c2)NC4=Nc5cc[nH]c5C(=O)N4C"
B8O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1C[C@H](C[C@H](C1)NC2=Nc3cc[nH]c3C(=O)N2C)c4ccc5c(c4)OCCO5"
B8O SMILES "OpenEye OEToolkits" 2.0.6 "CN1CC(CC(C1)NC2=Nc3cc[nH]c3C(=O)N2C)c4ccc5c(c4)OCCO5"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B8O "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(3R,5R)-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methylpiperidin-3-yl]amino}-3-methyl-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one"
B8O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[[(3~{R},5~{R})-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methyl-piperidin-3-yl]amino]-3-methyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B8O "Create component" 2019-01-22 PDBJ
B8O "Initial release" 2019-05-01 RCSB
##