data_B8W # _chem_comp.id B8W _chem_comp.name "6-methyl, guanosine-5'-monophosphate" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-25 _chem_comp.pdbx_modified_date 2019-04-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.247 _chem_comp.one_letter_code G _chem_comp.three_letter_code B8W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B8W C2 C1 C 0 1 Y N N 193.811 243.090 267.325 -4.675 0.866 -0.636 C2 B8W 1 B8W C4 C2 C 0 1 Y N N 192.767 241.049 266.850 -2.570 0.034 -0.213 C4 B8W 2 B8W C5 C3 C 0 1 Y N N 191.940 241.222 268.043 -3.144 -1.194 0.159 C5 B8W 3 B8W C6 C4 C 0 1 Y N N 192.148 242.441 268.844 -4.541 -1.319 0.106 C6 B8W 4 B8W O6 O1 O 0 1 N N N 191.423 242.693 269.971 -5.145 -2.480 0.455 O6 B8W 5 B8W N3 N1 N 0 1 Y N N 193.668 241.999 266.547 -3.363 1.028 -0.601 N3 B8W 6 B8W N2 N2 N 0 1 N N N 194.724 244.002 266.959 -5.469 1.923 -1.051 N2 B8W 7 B8W N1 N3 N 0 1 Y N N 193.082 243.310 268.434 -5.257 -0.276 -0.293 N1 B8W 8 B8W C8 C5 C 0 1 Y N N 191.433 239.371 267.056 -0.995 -1.394 0.373 C8 B8W 9 B8W "C1'" C6 C 0 1 N N R 192.954 239.323 265.069 -0.192 0.891 -0.338 "C1'" B8W 10 B8W "C2'" C7 C 0 1 N N R 194.226 238.518 265.269 0.005 1.810 0.894 "C2'" B8W 11 B8W "C3'" C8 C 0 1 N N S 193.688 237.095 265.360 1.450 2.325 0.687 "C3'" B8W 12 B8W "C4'" C9 C 0 1 N N R 192.474 237.115 264.444 2.088 1.291 -0.260 "C4'" B8W 13 B8W "C5'" C10 C 0 1 N N N 191.358 236.165 264.799 3.320 0.670 0.401 "C5'" B8W 14 B8W C61 C11 C 0 1 N N N 191.080 244.040 270.272 -6.571 -2.521 0.371 C61 B8W 15 B8W N7 N4 N 0 1 Y N N 191.140 240.156 268.114 -2.127 -2.021 0.506 N7 B8W 16 B8W N9 N5 N 0 1 Y N N 192.411 239.895 266.311 -1.215 -0.122 -0.068 N9 B8W 17 B8W "O2'" O2 O 0 1 N N N 195.023 238.677 264.107 -0.929 2.892 0.879 "O2'" B8W 18 B8W "O3'" O3 O 0 1 N N N 194.636 236.116 264.972 1.438 3.620 0.082 "O3'" B8W 19 B8W "O4'" O4 O 0 1 N N N 191.981 238.472 264.515 1.102 0.274 -0.508 "O4'" B8W 20 B8W "O5'" O5 O 0 1 N N N 190.753 236.512 266.035 3.961 -0.213 -0.522 "O5'" B8W 21 B8W OP1 O6 O 0 1 N N N 188.848 236.598 267.721 6.346 -0.107 0.299 OP1 B8W 22 B8W OP2 O7 O 0 1 N N N 189.084 234.669 266.000 4.968 -2.100 1.007 OP2 B8W 23 B8W P P1 P 0 1 N N N 189.240 236.126 266.348 5.294 -1.041 -0.161 P B8W 24 B8W H1 H1 H 0 1 N N N 195.175 243.704 266.118 -6.433 1.821 -1.087 H1 B8W 25 B8W H2 H2 H 0 1 N N N 194.273 244.880 266.801 -5.061 2.765 -1.306 H2 B8W 26 B8W H3 H3 H 0 1 N N N 190.939 238.436 266.838 -0.024 -1.818 0.581 H3 B8W 27 B8W H4 H4 H 0 1 N N N 193.173 240.142 264.368 -0.458 1.479 -1.216 H4 B8W 28 B8W H5 H5 H 0 1 N N N 194.747 238.810 266.193 -0.076 1.242 1.821 H5 B8W 29 B8W H6 H6 H 0 1 N N N 193.351 236.910 266.391 1.985 2.354 1.636 H6 B8W 30 B8W H7 H7 H 0 1 N N N 192.807 236.899 263.418 2.371 1.768 -1.198 H7 B8W 31 B8W H8 H8 H 0 1 N N N 190.596 236.197 264.007 4.014 1.459 0.689 H8 B8W 32 B8W H9 H9 H 0 1 N N N 191.766 235.146 264.874 3.016 0.112 1.286 H9 B8W 33 B8W H10 H10 H 0 1 N N N 190.500 244.071 271.206 -6.995 -1.762 1.027 H10 B8W 34 B8W H11 H11 H 0 1 N N N 191.998 244.634 270.391 -6.880 -2.327 -0.656 H11 B8W 35 B8W H12 H12 H 0 1 N N N 190.477 244.457 269.452 -6.925 -3.505 0.677 H12 B8W 36 B8W H13 H13 H 0 1 N N N 195.828 238.182 264.205 -0.845 3.495 1.630 H13 B8W 37 B8W H14 H14 H 0 1 N N N 195.376 236.137 265.568 0.997 4.298 0.613 H14 B8W 38 B8W H16 H16 H 0 1 N N N 188.732 234.200 266.748 4.286 -2.745 0.775 H16 B8W 39 B8W OP3 OP3 O 0 1 N N N 188.387 237.003 265.312 5.808 -1.827 -1.469 OP3 B8W 40 B8W H15 H15 H 0 1 N N N 187.836 237.612 265.790 6.610 -2.348 -1.325 H15 B8W 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B8W "O2'" "C2'" SING N N 1 B8W "C4'" "O4'" SING N N 2 B8W "C4'" "C5'" SING N N 3 B8W "C4'" "C3'" SING N N 4 B8W "O4'" "C1'" SING N N 5 B8W "C5'" "O5'" SING N N 6 B8W "O3'" "C3'" SING N N 7 B8W "C1'" "C2'" SING N N 8 B8W "C1'" N9 SING N N 9 B8W "C2'" "C3'" SING N N 10 B8W OP2 P SING N N 11 B8W "O5'" P SING N N 12 B8W N9 C4 SING Y N 13 B8W N9 C8 SING Y N 14 B8W P OP1 DOUB N N 15 B8W N3 C4 DOUB Y N 16 B8W N3 C2 SING Y N 17 B8W C4 C5 SING Y N 18 B8W N2 C2 SING N N 19 B8W C8 N7 DOUB Y N 20 B8W C2 N1 DOUB Y N 21 B8W C5 N7 SING Y N 22 B8W C5 C6 DOUB Y N 23 B8W N1 C6 SING Y N 24 B8W C6 O6 SING N N 25 B8W O6 C61 SING N N 26 B8W N2 H1 SING N N 27 B8W N2 H2 SING N N 28 B8W C8 H3 SING N N 29 B8W "C1'" H4 SING N N 30 B8W "C2'" H5 SING N N 31 B8W "C3'" H6 SING N N 32 B8W "C4'" H7 SING N N 33 B8W "C5'" H8 SING N N 34 B8W "C5'" H9 SING N N 35 B8W C61 H10 SING N N 36 B8W C61 H11 SING N N 37 B8W C61 H12 SING N N 38 B8W "O2'" H13 SING N N 39 B8W "O3'" H14 SING N N 40 B8W OP2 H16 SING N N 41 B8W P OP3 SING N N 42 B8W OP3 H15 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B8W InChI InChI 1.03 "InChI=1S/C11H16N5O8P/c1-22-9-5-8(14-11(12)15-9)16(3-13-5)10-7(18)6(17)4(24-10)2-23-25(19,20)21/h3-4,6-7,10,17-18H,2H2,1H3,(H2,12,14,15)(H2,19,20,21)/t4-,6-,7-,10-/m1/s1" B8W InChIKey InChI 1.03 LGIVPNCELBIIMS-KQYNXXCUSA-N B8W SMILES_CANONICAL CACTVS 3.385 "COc1nc(N)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" B8W SMILES CACTVS 3.385 "COc1nc(N)nc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" B8W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1c2c(nc(n1)N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" B8W SMILES "OpenEye OEToolkits" 2.0.6 "COc1c2c(nc(n1)N)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id B8W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-methoxy-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B8W "Create component" 2017-09-25 EBI B8W "Initial release" 2018-01-24 RCSB B8W "Modify one letter code" 2019-04-30 EBI ##