data_B9D # _chem_comp.id B9D _chem_comp.name 5-fluoro-alpha-L-idopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H11 F O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol; 5-fluoro-alpha-L-idose; 5-fluoro-L-idose; 5-fluoro-idose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-08-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 198.146 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B9D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3IJ7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 B9D "(2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol" PDB ? 2 B9D 5-fluoro-alpha-L-idose PDB ? 3 B9D 5-fluoro-L-idose PDB ? 4 B9D 5-fluoro-idose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B9D O1 O1 O 0 1 N Y N 12.387 17.348 46.419 -1.359 -1.909 -0.444 O1 B9D 1 B9D O5 O O 0 1 N N N 13.329 16.341 44.456 -0.017 -0.251 -1.391 O5 B9D 2 B9D C5 C1 C 0 1 N N R 12.246 17.166 45.005 -1.353 -0.605 -1.030 C5 B9D 3 B9D F1 F1 F 0 1 N N N 14.246 15.283 42.596 0.934 -1.517 0.290 F1 B9D 4 B9D C4 C2 C 0 1 N N R 12.248 18.533 44.295 -1.894 0.411 -0.021 C4 B9D 5 B9D O4 O2 O 0 1 N N N 11.220 19.353 44.823 -1.939 1.705 -0.624 O4 B9D 6 B9D C3 C3 C 0 1 N N R 12.030 18.283 42.794 -0.971 0.446 1.201 C3 B9D 7 B9D O3 O3 O 0 1 N N N 12.043 19.506 42.081 -0.978 -0.830 1.843 O3 B9D 8 B9D C2 C4 C 0 1 N N S 13.132 17.369 42.248 0.451 0.783 0.743 C2 B9D 9 B9D O2 O4 O 0 1 N N N 12.909 17.105 40.846 0.469 2.088 0.160 O2 B9D 10 B9D C1 C5 C 0 1 N N R 13.189 16.032 43.032 0.902 -0.247 -0.296 C1 B9D 11 B9D C6 C6 C 0 1 N N N 11.924 15.104 42.760 2.299 0.117 -0.803 C6 B9D 12 B9D O6 O6 O 0 1 N N N 10.651 15.804 42.920 3.217 0.121 0.292 O6 B9D 13 B9D HO1 HO1 H 0 1 N Y N 11.673 17.885 46.742 -1.027 -2.604 -1.028 HO1 B9D 14 B9D H5 H1 H 0 1 N N N 11.284 16.676 44.795 -1.982 -0.604 -1.920 H5 B9D 15 B9D H4 H2 H 0 1 N N N 13.231 19.006 44.438 -2.898 0.118 0.288 H4 B9D 16 B9D HO4 HO2 H 0 1 N Y N 11.227 20.194 44.381 -2.502 1.755 -1.408 HO4 B9D 17 B9D H3 H3 H 0 1 N N N 11.061 17.779 42.662 -1.319 1.208 1.899 H3 B9D 18 B9D HO3 HO3 H 0 1 N Y N 11.907 19.335 41.156 -1.850 -1.109 2.154 HO3 B9D 19 B9D H2 H4 H 0 1 N N N 14.098 17.880 42.375 1.126 0.757 1.599 H2 B9D 20 B9D HO2 HO4 H 0 1 N Y N 13.597 16.538 40.517 0.190 2.791 0.762 HO2 B9D 21 B9D H6 H6 H 0 1 N N N 11.986 14.722 41.730 2.619 -0.617 -1.543 H6 B9D 22 B9D H6A H6A H 0 1 N N N 11.951 14.261 43.466 2.273 1.106 -1.260 H6A B9D 23 B9D HO6 HO6 H 0 1 N N N 9.935 15.204 42.746 4.124 0.344 0.044 HO6 B9D 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B9D C5 O1 SING N N 1 B9D O1 HO1 SING N N 2 B9D C1 O5 SING N N 3 B9D O5 C5 SING N N 4 B9D C4 C5 SING N N 5 B9D C5 H5 SING N N 6 B9D F1 C1 SING N N 7 B9D C3 C4 SING N N 8 B9D C4 O4 SING N N 9 B9D C4 H4 SING N N 10 B9D O4 HO4 SING N N 11 B9D O3 C3 SING N N 12 B9D C2 C3 SING N N 13 B9D C3 H3 SING N N 14 B9D O3 HO3 SING N N 15 B9D O2 C2 SING N N 16 B9D C2 C1 SING N N 17 B9D C2 H2 SING N N 18 B9D O2 HO2 SING N N 19 B9D C6 C1 SING N N 20 B9D C6 O6 SING N N 21 B9D C6 H6 SING N N 22 B9D C6 H6A SING N N 23 B9D O6 HO6 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B9D SMILES ACDLabs 12.01 "FC1(OC(O)C(O)C(O)C1O)CO" B9D InChI InChI 1.03 "InChI=1S/C6H11FO6/c7-6(1-8)4(11)2(9)3(10)5(12)13-6/h2-5,8-12H,1H2/t2-,3-,4+,5-,6+/m1/s1" B9D InChIKey InChI 1.03 YQZCKDSOGGIGPL-DVKNGEFBSA-N B9D SMILES_CANONICAL CACTVS 3.370 "OC[C@]1(F)O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O" B9D SMILES CACTVS 3.370 "OC[C]1(F)O[CH](O)[CH](O)[CH](O)[CH]1O" B9D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@]1([C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)F)O" B9D SMILES "OpenEye OEToolkits" 1.7.6 "C(C1(C(C(C(C(O1)O)O)O)O)F)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B9D "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S,6R)-6-fluoro-6-(hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetrol (non-preferred name)" B9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support B9D "CARBOHYDRATE ISOMER" L PDB ? B9D "CARBOHYDRATE RING" pyranose PDB ? B9D "CARBOHYDRATE ANOMER" alpha PDB ? B9D "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B9D "Create component" 2009-08-18 RCSB B9D "Modify descriptor" 2011-06-04 RCSB B9D "Other modification" 2012-12-21 RCSB B9D "Other modification" 2020-07-03 RCSB B9D "Modify name" 2020-07-17 RCSB B9D "Modify synonyms" 2020-07-17 RCSB B9D "Modify linking type" 2020-07-17 RCSB B9D "Modify atom id" 2020-07-17 RCSB B9D "Modify component atom id" 2020-07-17 RCSB B9D "Modify leaving atom flag" 2020-07-17 RCSB ##