data_B9P # _chem_comp.id B9P _chem_comp.name 1-biotinylpyrene _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H24 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-03-15 _chem_comp.pdbx_modified_date 2016-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 428.546 _chem_comp.one_letter_code ? _chem_comp.three_letter_code B9P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5IRU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal B9P O11 O1 O 0 1 N N N 13.123 14.958 3.507 -0.871 -1.218 0.562 O11 B9P 1 B9P C11 C1 C 0 1 N N N 14.116 14.820 2.836 -0.968 -0.022 0.422 C11 B9P 2 B9P C10 C2 C 0 1 N N N 14.501 13.433 2.360 0.270 0.838 0.405 C10 B9P 3 B9P C9 C3 C 0 1 N N N 13.374 12.413 2.575 1.507 -0.045 0.584 C9 B9P 4 B9P C8 C4 C 0 1 N N N 13.358 11.831 3.986 2.763 0.828 0.567 C8 B9P 5 B9P C7 C5 C 0 1 N N N 12.089 11.033 4.381 4.000 -0.055 0.746 C7 B9P 6 B9P C2 C6 C 0 1 N N S 12.276 10.313 5.740 5.256 0.818 0.729 C2 B9P 7 B9P S1 S1 S 0 1 N N N 13.080 8.711 5.465 5.590 1.448 -0.967 S1 B9P 8 B9P C6 C7 C 0 1 N N N 12.660 8.222 7.150 7.404 1.613 -0.715 C6 B9P 9 B9P C5 C8 C 0 1 N N R 11.309 8.777 7.478 7.728 0.426 0.213 C5 B9P 10 B9P N1 N1 N 0 1 N N N 10.249 7.860 7.182 8.062 -0.751 -0.604 N1 B9P 11 B9P C4 C9 C 0 1 N N S 10.997 9.976 6.545 6.511 -0.024 1.031 C4 B9P 12 B9P N2 N2 N 0 1 N N N 9.904 9.473 5.730 6.281 -1.410 0.594 N2 B9P 13 B9P C3 C10 C 0 1 N N N 9.457 8.287 6.174 7.198 -1.737 -0.326 C3 B9P 14 B9P O3 O2 O 0 1 N N N 8.459 7.709 5.760 7.242 -2.828 -0.860 O3 B9P 15 B9P C1 C11 C 0 1 Y N N 14.873 16.056 2.424 -2.296 0.595 0.261 C1 B9P 16 B9P C16 C12 C 0 1 Y N N 14.248 16.975 1.615 -2.401 2.059 0.232 C16 B9P 17 B9P C15 C13 C 0 1 Y N N 14.879 18.147 1.237 -3.549 2.688 0.092 C15 B9P 18 B9P C14 C14 C 0 1 Y N N 16.151 18.444 1.671 -4.790 1.906 -0.045 C14 B9P 19 B9P C30 C15 C 0 1 Y N N 16.758 19.643 1.254 -5.967 2.466 -0.188 C30 B9P 20 B9P C31 C16 C 0 1 Y N N 18.049 19.952 1.688 -7.175 1.624 -0.319 C31 B9P 21 B9P C32 C17 C 0 1 Y N N 18.710 19.047 2.531 -7.070 0.317 -0.292 C32 B9P 22 B9P C19 C18 C 0 1 Y N N 19.999 19.349 2.980 -8.235 -0.577 -0.417 C19 B9P 23 B9P C18 C19 C 0 1 Y N N 20.651 18.454 3.820 -8.055 -1.880 -0.382 C18 B9P 24 B9P C17 C20 C 0 1 Y N N 20.004 17.279 4.202 -6.732 -2.496 -0.221 C17 B9P 25 B9P C34 C21 C 0 1 Y N N 18.726 16.953 3.774 -5.640 -1.777 -0.101 C34 B9P 26 B9P C33 C22 C 0 1 Y N N 18.077 17.846 2.939 -5.744 -0.307 -0.131 C33 B9P 27 B9P C13 C23 C 0 1 Y N N 16.792 17.527 2.519 -4.677 0.436 -0.015 C13 B9P 28 B9P C35 C24 C 0 1 Y N N 18.124 15.760 4.181 -4.315 -2.400 0.060 C35 B9P 29 B9P C36 C25 C 0 1 Y N N 16.849 15.425 3.764 -3.237 -1.649 0.178 C36 B9P 30 B9P C12 C26 C 0 1 Y N N 16.177 16.325 2.937 -3.348 -0.181 0.142 C12 B9P 31 B9P H1 H1 H 0 1 N N N 15.390 13.101 2.917 0.334 1.364 -0.547 H1 B9P 32 B9P H2 H2 H 0 1 N N N 14.737 13.480 1.287 0.220 1.562 1.218 H2 B9P 33 B9P H3 H3 H 0 1 N N N 12.411 12.911 2.390 1.443 -0.571 1.536 H3 B9P 34 B9P H4 H4 H 0 1 N N N 13.505 11.590 1.858 1.556 -0.770 -0.229 H4 B9P 35 B9P H5 H5 H 0 1 N N N 14.222 11.157 4.081 2.827 1.354 -0.385 H5 B9P 36 B9P H6 H6 H 0 1 N N N 13.464 12.665 4.695 2.713 1.552 1.380 H6 B9P 37 B9P H7 H7 H 0 1 N N N 11.239 11.727 4.457 3.936 -0.581 1.698 H7 B9P 38 B9P H8 H8 H 0 1 N N N 11.881 10.283 3.604 4.050 -0.779 -0.067 H8 B9P 39 B9P H9 H9 H 0 1 N N N 12.960 10.900 6.371 5.163 1.641 1.438 H9 B9P 40 B9P H10 H10 H 0 1 N N N 12.639 7.125 7.225 7.936 1.519 -1.662 H10 B9P 41 B9P H11 H11 H 0 1 N N N 13.407 8.623 7.851 7.643 2.559 -0.230 H11 B9P 42 B9P H12 H12 H 0 1 N N N 11.274 9.105 8.527 8.559 0.677 0.871 H12 B9P 43 B9P H13 H13 H 0 1 N N N 10.110 6.997 7.669 8.791 -0.805 -1.242 H13 B9P 44 B9P H14 H14 H 0 1 N N N 10.686 10.846 7.141 6.740 0.008 2.096 H14 B9P 45 B9P H15 H15 H 0 1 N N N 9.530 9.952 4.935 5.578 -1.994 0.920 H15 B9P 46 B9P H16 H16 H 0 1 N N N 13.245 16.778 1.268 -1.499 2.645 0.331 H16 B9P 47 B9P H17 H17 H 0 1 N N N 14.364 18.841 0.590 -3.580 3.768 0.076 H17 B9P 48 B9P H18 H18 H 0 1 N N N 16.228 20.321 0.601 -6.054 3.542 -0.209 H18 B9P 49 B9P H19 H19 H 0 1 N N N 18.529 20.870 1.381 -8.145 2.086 -0.437 H19 B9P 50 B9P H20 H20 H 0 1 N N N 20.482 20.266 2.678 -9.227 -0.166 -0.537 H20 B9P 51 B9P H21 H21 H 0 1 N N N 21.649 18.666 4.174 -8.917 -2.523 -0.475 H21 B9P 52 B9P H22 H22 H 0 1 N N N 20.520 16.594 4.859 -6.655 -3.573 -0.199 H22 B9P 53 B9P H23 H23 H 0 1 N N N 18.663 15.088 4.832 -4.226 -3.476 0.083 H23 B9P 54 B9P H24 H24 H 0 1 N N N 16.388 14.497 4.069 -2.269 -2.112 0.297 H24 B9P 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B9P C15 C16 DOUB Y N 1 B9P C15 C14 SING Y N 2 B9P C30 C14 DOUB Y N 3 B9P C30 C31 SING Y N 4 B9P C16 C1 SING Y N 5 B9P C14 C13 SING Y N 6 B9P C31 C32 DOUB Y N 7 B9P C10 C9 SING N N 8 B9P C10 C11 SING N N 9 B9P C1 C11 SING N N 10 B9P C1 C12 DOUB Y N 11 B9P C13 C12 SING Y N 12 B9P C13 C33 DOUB Y N 13 B9P C32 C33 SING Y N 14 B9P C32 C19 SING Y N 15 B9P C9 C8 SING N N 16 B9P C11 O11 DOUB N N 17 B9P C12 C36 SING Y N 18 B9P C33 C34 SING Y N 19 B9P C19 C18 DOUB Y N 20 B9P C36 C35 DOUB Y N 21 B9P C34 C35 SING Y N 22 B9P C34 C17 DOUB Y N 23 B9P C18 C17 SING Y N 24 B9P C8 C7 SING N N 25 B9P C7 C2 SING N N 26 B9P S1 C2 SING N N 27 B9P S1 C6 SING N N 28 B9P N2 C3 SING N N 29 B9P N2 C4 SING N N 30 B9P C2 C4 SING N N 31 B9P O3 C3 DOUB N N 32 B9P C3 N1 SING N N 33 B9P C4 C5 SING N N 34 B9P C6 C5 SING N N 35 B9P N1 C5 SING N N 36 B9P C10 H1 SING N N 37 B9P C10 H2 SING N N 38 B9P C9 H3 SING N N 39 B9P C9 H4 SING N N 40 B9P C8 H5 SING N N 41 B9P C8 H6 SING N N 42 B9P C7 H7 SING N N 43 B9P C7 H8 SING N N 44 B9P C2 H9 SING N N 45 B9P C6 H10 SING N N 46 B9P C6 H11 SING N N 47 B9P C5 H12 SING N N 48 B9P N1 H13 SING N N 49 B9P C4 H14 SING N N 50 B9P N2 H15 SING N N 51 B9P C16 H16 SING N N 52 B9P C15 H17 SING N N 53 B9P C30 H18 SING N N 54 B9P C31 H19 SING N N 55 B9P C19 H20 SING N N 56 B9P C18 H21 SING N N 57 B9P C17 H22 SING N N 58 B9P C35 H23 SING N N 59 B9P C36 H24 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor B9P SMILES ACDLabs 12.01 "O=C(CCCCC1C2C(CS1)NC(N2)=O)c3c5c6c(cc3)ccc4c6c(ccc4)cc5" B9P InChI InChI 1.03 "InChI=1S/C26H24N2O2S/c29-21(6-1-2-7-22-25-20(14-31-22)27-26(30)28-25)18-12-10-17-9-8-15-4-3-5-16-11-13-19(18)24(17)23(15)16/h3-5,8-13,20,22,25H,1-2,6-7,14H2,(H2,27,28,30)/t20-,22-,25-/m0/s1" B9P InChIKey InChI 1.03 AKVNOAJJWXUFFK-XTJBDQBJSA-N B9P SMILES_CANONICAL CACTVS 3.385 "O=C1N[C@H]2CS[C@@H](CCCCC(=O)c3ccc4ccc5cccc6ccc3c4c56)[C@H]2N1" B9P SMILES CACTVS 3.385 "O=C1N[CH]2CS[CH](CCCCC(=O)c3ccc4ccc5cccc6ccc3c4c56)[CH]2N1" B9P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cc2ccc3ccc(c4c3c2c(c1)cc4)C(=O)CCCC[C@H]5[C@@H]6[C@H](CS5)NC(=O)N6" B9P SMILES "OpenEye OEToolkits" 2.0.4 "c1cc2ccc3ccc(c4c3c2c(c1)cc4)C(=O)CCCCC5C6C(CS5)NC(=O)N6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier B9P "SYSTEMATIC NAME" ACDLabs 12.01 "(3aS,4S,6aR)-4-[5-oxo-5-(pyren-1-yl)pentyl]tetrahydro-1H-thieno[3,4-d]imidazol-2(3H)-one" B9P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(3~{a}~{S},4~{S},6~{a}~{R})-4-(5-oxidanylidene-5-pyren-1-yl-pentyl)-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site B9P "Create component" 2016-03-15 EBI B9P "Initial release" 2016-10-12 RCSB #