data_BAB # _chem_comp.id BAB _chem_comp.name "BIS(5-AMIDINO-BENZIMIDAZOLYL)METHANE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 N8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 3 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 335.386 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BAB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BAB C1 C1 C 0 1 Y N N 8.576 0.361 31.692 -2.740 -9.769 -1.633 C1 BAB 1 BAB C2 C2 C 0 1 Y N N 8.627 0.553 33.111 -1.951 -9.822 -2.784 C2 BAB 2 BAB C3 C3 C 0 1 Y N N 8.349 1.800 33.665 -1.906 -8.745 -3.678 C3 BAB 3 BAB C4 C4 C 0 1 Y N N 8.002 2.911 32.824 -2.675 -7.604 -3.392 C4 BAB 4 BAB C5 C5 C 0 1 Y N N 7.949 2.732 31.409 -3.451 -7.581 -2.237 C5 BAB 5 BAB C6 C6 C 0 1 Y N N 8.231 1.461 30.843 -3.511 -8.642 -1.333 C6 BAB 6 BAB C7 C7 C 0 1 N N N 8.881 -0.983 31.103 -2.763 -10.908 -0.728 C7 BAB 7 BAB C8 C8 C 0 1 Y N N 7.449 4.841 31.928 -3.632 -5.733 -3.380 C8 BAB 8 BAB C9 C9 C 0 1 N N N 7.069 6.309 31.746 -4.122 -4.343 -3.709 C9 BAB 9 BAB N1 N1 N 1 1 N N N 8.837 -1.162 29.809 -2.578 -12.213 -1.145 N1 BAB 10 BAB N2 N2 N 0 1 N N N 9.214 -2.045 31.922 -2.972 -10.792 0.633 N2 BAB 11 BAB N3 N3 N 0 1 Y N N 7.690 4.224 33.063 -2.807 -6.427 -4.094 N3 BAB 12 BAB N4 N4 N 0 1 Y N N 7.593 3.966 30.886 -4.060 -6.352 -2.259 N4 BAB 13 BAB "C1'" "C1'" C 0 1 Y N N 6.817 9.168 37.172 -0.207 -0.096 -1.989 "C1'" BAB 14 BAB "C2'" "C2'" C 0 1 Y N N 6.482 10.286 36.335 -0.970 -0.107 -0.802 "C2'" BAB 15 BAB "C3'" "C3'" C 0 1 Y N N 6.408 10.134 34.949 -2.071 -0.956 -0.657 "C3'" BAB 16 BAB "C4'" "C4'" C 0 1 Y N N 6.665 8.855 34.349 -2.375 -1.775 -1.718 "C4'" BAB 17 BAB "C5'" "C5'" C 0 1 Y N N 6.999 7.737 35.174 -1.611 -1.764 -2.909 "C5'" BAB 18 BAB "C6'" "C6'" C 0 1 Y N N 7.071 7.901 36.576 -0.526 -0.933 -3.062 "C6'" BAB 19 BAB "C7'" "C7'" C 0 1 N N N 6.894 9.330 38.659 0.932 0.803 -2.096 "C7'" BAB 20 BAB "C8'" "C8'" C 0 1 Y N N 6.974 7.122 33.037 -3.264 -3.276 -3.144 "C8'" BAB 21 BAB "N1'" "N1'" N 1 1 N N N 7.198 8.309 39.423 1.003 2.020 -1.445 "N1'" BAB 22 BAB "N2'" "N2'" N 0 1 N N N 6.648 10.555 39.237 2.050 0.524 -2.860 "N2'" BAB 23 BAB "N3'" "N3'" N 1 1 Y N N 6.672 8.398 33.070 -3.397 -2.719 -1.880 "N3'" BAB 24 BAB "N4'" "N4'" N 0 1 Y N N 7.186 6.663 34.309 -2.174 -2.701 -3.783 "N4'" BAB 25 BAB H2 H2 H 0 1 N N N 8.883 -0.275 33.755 -1.358 -10.708 -3.001 H2 BAB 26 BAB H3 H3 H 0 1 N N N 8.395 1.933 34.736 -1.290 -8.795 -4.570 H3 BAB 27 BAB H6 H6 H 0 1 N N N 8.185 1.324 29.773 -4.128 -8.590 -0.441 H6 BAB 28 BAB H91 1H9 H 0 1 N N N 6.062 6.314 31.303 -4.182 -4.236 -4.802 H91 BAB 29 BAB H92 2H9 H 0 1 N N N 7.839 6.776 31.115 -5.153 -4.221 -3.347 H92 BAB 30 BAB HN21 1HN2 H 0 0 N N N 9.432 -2.971 31.614 -2.988 -11.605 1.241 HN21 BAB 31 BAB HN22 2HN2 H 0 0 N N N 9.201 -1.736 32.873 -3.087 -9.891 1.082 HN22 BAB 32 BAB HN4 HN4 H 0 1 N N N 7.464 4.179 29.917 -4.702 -5.994 -1.565 HN4 BAB 33 BAB "H2'" "H2'" H 0 1 N N N 6.286 11.250 36.780 -0.703 0.554 0.021 "H2'" BAB 34 BAB "H3'" "H3'" H 0 1 N N N 6.157 10.980 34.327 -2.655 -0.962 0.256 "H3'" BAB 35 BAB "H6'" "H6'" H 0 1 N N N 7.321 7.057 37.201 0.056 -0.930 -3.978 "H6'" BAB 36 BAB "H2'1" "1H2'" H 0 0 N N N 6.678 10.753 40.217 2.829 1.171 -2.921 "H2'1" BAB 37 BAB "H2'2" "2H2'" H 0 0 N N N 6.434 11.215 38.517 2.150 -0.350 -3.364 "H2'2" BAB 38 BAB "HN4'" "'HN4" H 0 0 N N N 7.430 5.729 34.569 -1.822 -2.907 -4.705 "HN4'" BAB 39 BAB HN1 "1H1'" H 0 1 N N N 7.200 8.609 40.377 1.808 2.630 -1.535 HN1 BAB 40 BAB HN2 "2H1'" H 0 1 N N N 7.395 7.382 39.104 0.263 2.338 -0.827 HN2 BAB 41 BAB HN3 "'HN3" H 0 1 N N N 6.474 8.957 32.265 -4.087 -2.941 -1.180 HN3 BAB 42 BAB HN5 1HN1 H 0 1 N N N 9.068 -2.114 29.606 -2.599 -12.991 -0.495 HN5 BAB 43 BAB HN6 2HN1 H 0 1 N N N 8.610 -0.462 29.132 -2.386 -12.440 -2.115 HN6 BAB 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BAB C1 C2 SING Y N 1 BAB C1 C6 DOUB Y N 2 BAB C1 C7 SING N N 3 BAB C2 C3 DOUB Y N 4 BAB C2 H2 SING N N 5 BAB C3 C4 SING Y N 6 BAB C3 H3 SING N N 7 BAB C4 C5 DOUB Y N 8 BAB C4 N3 SING Y N 9 BAB C5 C6 SING Y N 10 BAB C5 N4 SING Y N 11 BAB C6 H6 SING N N 12 BAB C7 N1 DOUB N Z 13 BAB C7 N2 SING N N 14 BAB C8 C9 SING N N 15 BAB C8 N3 DOUB Y N 16 BAB C8 N4 SING Y N 17 BAB C9 "C8'" SING N N 18 BAB C9 H91 SING N N 19 BAB C9 H92 SING N N 20 BAB N2 HN21 SING N N 21 BAB N2 HN22 SING N N 22 BAB N4 HN4 SING N N 23 BAB "C1'" "C2'" SING Y N 24 BAB "C1'" "C6'" DOUB Y N 25 BAB "C1'" "C7'" SING N N 26 BAB "C2'" "C3'" DOUB Y N 27 BAB "C2'" "H2'" SING N N 28 BAB "C3'" "C4'" SING Y N 29 BAB "C3'" "H3'" SING N N 30 BAB "C4'" "C5'" DOUB Y N 31 BAB "C4'" "N3'" SING Y N 32 BAB "C5'" "C6'" SING Y N 33 BAB "C5'" "N4'" SING Y N 34 BAB "C6'" "H6'" SING N N 35 BAB "C7'" "N1'" DOUB N Z 36 BAB "C7'" "N2'" SING N N 37 BAB "C8'" "N3'" DOUB Y N 38 BAB "C8'" "N4'" SING Y N 39 BAB "N2'" "H2'1" SING N N 40 BAB "N2'" "H2'2" SING N N 41 BAB "N4'" "HN4'" SING N N 42 BAB HN1 "N1'" SING N N 43 BAB HN3 "N3'" SING N N 44 BAB HN5 N1 SING N N 45 BAB HN6 N1 SING N N 46 BAB HN2 "N1'" SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BAB SMILES ACDLabs 10.04 "n2c1ccc(cc1nc2Cc4[nH+]c3ccc(C(=[NH2+])\N)cc3n4)\C(=[NH2+])N" BAB SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1ccc2nc(Cc3[nH]c4cc(ccc4[nH+]3)C(N)=[NH2+])[nH]c2c1" BAB SMILES CACTVS 3.341 "NC(=[NH2+])c1ccc2nc(Cc3[nH]c4cc(ccc4[nH+]3)C(N)=[NH2+])[nH]c2c1" BAB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1C(=[NH2+])N)[nH]c([nH+]2)Cc3[nH]c4cc(ccc4n3)C(=[NH2+])N" BAB SMILES "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1C(=[NH2+])N)[nH]c([nH+]2)Cc3[nH]c4cc(ccc4n3)C(=[NH2+])N" BAB InChI InChI 1.03 "InChI=1S/C17H16N8/c18-16(19)8-1-3-10-12(5-8)24-14(22-10)7-15-23-11-4-2-9(17(20)21)6-13(11)25-15/h1-6H,7H2,(H3,18,19)(H3,20,21)(H,22,24)(H,23,25)/p+3" BAB InChIKey InChI 1.03 QZKOOEFIMWKZPK-UHFFFAOYSA-Q # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BAB "SYSTEMATIC NAME" ACDLabs 10.04 "6-[amino(iminio)methyl]-2-({6-[amino(iminio)methyl]-1H-benzimidazol-2-yl}methyl)-1H-benzimidazol-3-ium" BAB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[amino-[2-[[6-(amino-azaniumylidene-methyl)-1H-benzimidazol-3-ium-2-yl]methyl]-3H-benzimidazol-5-yl]methylidene]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BAB "Create component" 1999-07-08 RCSB BAB "Modify aromatic_flag" 2011-06-04 RCSB BAB "Modify descriptor" 2011-06-04 RCSB #