data_BAK # _chem_comp.id BAK _chem_comp.name "BIS(5-AMIDINO-2-BENZIMIDAZOLYL)METHANE KETONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H16 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 1999-07-28 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.362 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BAK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1C2I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BAK C1 C1 C 0 1 Y N N 45.259 19.640 52.760 5.473 0.598 -0.019 C1 BAK 1 BAK C2 C2 C 0 1 Y N N 44.651 19.247 51.518 4.727 1.784 -0.056 C2 BAK 2 BAK C3 C3 C 0 1 Y N N 44.277 20.181 50.536 3.366 1.748 -0.055 C3 BAK 3 BAK C4 C4 C 0 1 Y N N 44.530 21.512 50.840 2.696 0.515 -0.016 C4 BAK 4 BAK C5 C5 C 0 1 Y N N 45.098 21.925 51.998 3.442 -0.682 0.021 C5 BAK 5 BAK C6 C6 C 0 1 Y N N 45.475 21.031 52.978 4.828 -0.635 0.014 C6 BAK 6 BAK C7 C7 C 0 1 N N N 45.641 18.698 53.749 6.950 0.656 -0.021 C7 BAK 7 BAK C8 C8 C 0 1 Y N N 44.737 23.608 50.802 1.280 -1.130 0.036 C8 BAK 8 BAK C9 C9 C 0 1 N N N 44.752 24.956 50.285 0.000 -1.869 0.059 C9 BAK 9 BAK N1 N1 N 1 1 N N N 46.394 19.084 54.739 7.661 -0.470 0.014 N1 BAK 10 BAK N2 N2 N 0 1 N N N 45.255 17.447 53.689 7.570 1.834 -0.058 N2 BAK 11 BAK N3 N3 N 0 1 Y N N 44.321 22.579 50.135 1.397 0.175 -0.005 N3 BAK 12 BAK N4 N4 N 0 1 Y N N 45.218 23.242 51.967 2.522 -1.706 0.054 N4 BAK 13 BAK "C1'" "C1'" C 0 1 Y N N 43.479 27.365 45.015 -5.473 0.597 -0.018 "C1'" BAK 14 BAK "C2'" "C2'" C 0 1 Y N N 43.267 25.983 44.709 -4.727 1.783 -0.056 "C2'" BAK 15 BAK "C3'" "C3'" C 0 1 Y N N 43.446 24.978 45.672 -3.367 1.747 -0.056 "C3'" BAK 16 BAK "C4'" "C4'" C 0 1 Y N N 43.840 25.388 46.934 -2.696 0.515 -0.017 "C4'" BAK 17 BAK "C5'" "C5'" C 0 1 Y N N 44.052 26.657 47.271 -3.442 -0.683 0.021 "C5'" BAK 18 BAK "C6'" "C6'" C 0 1 Y N N 43.883 27.690 46.355 -4.827 -0.635 0.020 "C6'" BAK 19 BAK "C7'" "C7'" C 0 1 N N N 43.302 28.357 44.039 -6.951 0.655 -0.020 "C7'" BAK 20 BAK "C8'" "C8'" C 0 1 Y N N 44.423 25.438 48.959 -1.280 -1.131 0.036 "C8'" BAK 21 BAK "N1'" "N1'" N 1 1 N N N 43.543 29.620 44.314 -7.576 1.697 0.525 "N1'" BAK 22 BAK "N2'" "N2'" N 0 1 N N N 42.898 28.011 42.847 -7.655 -0.334 -0.565 "N2'" BAK 23 BAK "N3'" "N3'" N 0 1 Y N N 44.072 24.675 47.991 -1.397 0.175 0.000 "N3'" BAK 24 BAK "N4'" "N4'" N 0 1 Y N N 44.411 26.672 48.537 -2.522 -1.706 0.054 "N4'" BAK 25 BAK O9 O9 O 0 1 N N N 45.103 25.811 51.079 0.000 -3.084 0.098 O9 BAK 26 BAK H2 H2 H 0 1 N N N 44.473 18.202 51.324 5.237 2.736 -0.086 H2 BAK 27 BAK H3 H3 H 0 1 N N N 43.816 19.881 49.608 2.802 2.668 -0.083 H3 BAK 28 BAK H6 H6 H 0 1 N N N 45.922 21.392 53.891 5.403 -1.548 0.037 H6 BAK 29 BAK HH11 1HH1 H 0 0 N N N 46.749 20.013 54.775 7.210 -1.328 0.041 HH11 BAK 30 BAK HH12 2HH1 H 0 0 N N N 46.619 18.498 55.511 8.631 -0.431 0.013 HH12 BAK 31 BAK HH21 1HH2 H 0 0 N N N 44.706 17.123 52.902 8.540 1.873 -0.060 HH21 BAK 32 BAK HH22 2HH2 H 0 0 N N N 45.526 16.777 54.370 7.053 2.654 -0.088 HH22 BAK 33 BAK HN4 HN4 H 0 1 N N N 45.601 23.849 52.691 2.717 -2.656 0.083 HN4 BAK 34 BAK "H2'" "H2'" H 0 1 N N N 42.960 25.688 43.718 -5.237 2.735 -0.087 "H2'" BAK 35 BAK "H3'" "H3'" H 0 1 N N N 43.285 23.937 45.437 -2.802 2.668 -0.087 "H3'" BAK 36 BAK "H6'" "H6'" H 0 1 N N N 44.063 28.713 46.652 -5.402 -1.549 0.049 "H6'" BAK 37 BAK "H1'1" "1H1'" H 0 0 N N N 43.835 29.884 45.232 -7.063 2.418 0.922 "H1'1" BAK 38 BAK "H1'2" "2H1'" H 0 0 N N N 43.440 30.375 43.654 -8.546 1.735 0.524 "H1'2" BAK 39 BAK "H2'1" "1H2'" H 0 0 N N N 42.597 27.062 42.691 -8.625 -0.296 -0.566 "H2'1" BAK 40 BAK "H2'2" "2H2'" H 0 0 N N N 42.648 28.680 42.153 -7.200 -1.093 -0.962 "H2'2" BAK 41 BAK "HN4'" "'HN4" H 0 0 N N N 44.639 27.495 49.093 -2.716 -2.656 0.084 "HN4'" BAK 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BAK C1 C2 SING Y N 1 BAK C1 C6 DOUB Y N 2 BAK C1 C7 SING N N 3 BAK C2 C3 DOUB Y N 4 BAK C2 H2 SING N N 5 BAK C3 C4 SING Y N 6 BAK C3 H3 SING N N 7 BAK C4 C5 DOUB Y N 8 BAK C4 N3 SING Y N 9 BAK C5 C6 SING Y N 10 BAK C5 N4 SING Y N 11 BAK C6 H6 SING N N 12 BAK C7 N1 DOUB N N 13 BAK C7 N2 SING N N 14 BAK C8 C9 SING N N 15 BAK C8 N3 DOUB Y N 16 BAK C8 N4 SING Y N 17 BAK C9 "C8'" SING N N 18 BAK C9 O9 DOUB N N 19 BAK N1 HH11 SING N N 20 BAK N1 HH12 SING N N 21 BAK N2 HH21 SING N N 22 BAK N2 HH22 SING N N 23 BAK N4 HN4 SING N N 24 BAK "C1'" "C2'" SING Y N 25 BAK "C1'" "C6'" DOUB Y N 26 BAK "C1'" "C7'" SING N N 27 BAK "C2'" "C3'" DOUB Y N 28 BAK "C2'" "H2'" SING N N 29 BAK "C3'" "C4'" SING Y N 30 BAK "C3'" "H3'" SING N N 31 BAK "C4'" "C5'" DOUB Y N 32 BAK "C4'" "N3'" SING Y N 33 BAK "C5'" "C6'" SING Y N 34 BAK "C5'" "N4'" SING Y N 35 BAK "C6'" "H6'" SING N N 36 BAK "C7'" "N1'" DOUB N N 37 BAK "C7'" "N2'" SING N N 38 BAK "C8'" "N3'" DOUB Y N 39 BAK "C8'" "N4'" SING Y N 40 BAK "N1'" "H1'1" SING N N 41 BAK "N1'" "H1'2" SING N N 42 BAK "N2'" "H2'1" SING N N 43 BAK "N2'" "H2'2" SING N N 44 BAK "N4'" "HN4'" SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BAK SMILES ACDLabs 10.04 "O=C(c2nc1ccc(cc1n2)\C(=[NH2+])N)c3nc4ccc(C(=[NH2+])\N)cc4n3" BAK SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1ccc2nc([nH]c2c1)C(=O)c3[nH]c4cc(ccc4n3)C(N)=[NH2+]" BAK SMILES CACTVS 3.341 "NC(=[NH2+])c1ccc2nc([nH]c2c1)C(=O)c3[nH]c4cc(ccc4n3)C(N)=[NH2+]" BAK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1C(=[NH2+])N)[nH]c(n2)C(=O)c3[nH]c4cc(ccc4n3)C(=[NH2+])N" BAK SMILES "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1C(=[NH2+])N)[nH]c(n2)C(=O)c3[nH]c4cc(ccc4n3)C(=[NH2+])N" BAK InChI InChI 1.03 "InChI=1S/C17H14N8O/c18-14(19)7-1-3-9-11(5-7)24-16(22-9)13(26)17-23-10-4-2-8(15(20)21)6-12(10)25-17/h1-6H,(H3,18,19)(H3,20,21)(H,22,24)(H,23,25)/p+2" BAK InChIKey InChI 1.03 VVVXDHROXQUONB-UHFFFAOYSA-P # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BAK "SYSTEMATIC NAME" ACDLabs 10.04 "[carbonylbis(1H-benzimidazole-2,6-diyl)]bis(aminomethaniminium)" BAK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[amino-[2-[[6-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]carbonyl]-3H-benzimidazol-5-yl]methylidene]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BAK "Create component" 1999-07-28 RCSB BAK "Modify descriptor" 2011-06-04 RCSB #