data_BC3 # _chem_comp.id BC3 _chem_comp.name "2-amino-7-(pyridin-3-ylmethyl)-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H11 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "peldesine,BCX-34" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-06-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 241.249 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BC3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3DJF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BC3 N01 N01 N 0 1 N N N -22.599 4.312 1.143 -2.451 2.984 -0.395 N01 BC3 1 BC3 C02 C02 C 0 1 N N N -23.282 5.216 0.445 -2.247 1.638 -0.213 C02 BC3 2 BC3 N03 N03 N 0 1 N N N -22.757 6.434 0.238 -1.140 1.095 -0.659 N03 BC3 3 BC3 C04 C04 C 0 1 Y N N -23.423 7.365 -0.462 -0.900 -0.222 -0.501 C04 BC3 4 BC3 C05 C05 C 0 1 Y N N -23.122 8.671 -0.817 0.167 -1.073 -0.862 C05 BC3 5 BC3 C06 C06 C 0 1 N N N -21.843 9.433 -0.465 1.423 -0.661 -1.586 C06 BC3 6 BC3 C07 C07 C 0 1 Y N N -20.932 9.497 -1.692 2.430 -0.144 -0.592 C07 BC3 7 BC3 C08 C08 C 0 1 Y N N -20.622 8.341 -2.395 3.337 -1.008 0.003 C08 BC3 8 BC3 C09 C09 C 0 1 Y N N -19.792 8.446 -3.502 4.246 -0.487 0.912 C09 BC3 9 BC3 C10 C10 C 0 1 Y N N -19.302 9.695 -3.866 4.218 0.865 1.193 C10 BC3 10 BC3 N11 N11 N 0 1 Y N N -19.617 10.776 -3.173 3.340 1.658 0.609 N11 BC3 11 BC3 C12 C12 C 0 1 Y N N -20.406 10.712 -2.113 2.465 1.199 -0.265 C12 BC3 12 BC3 C13 C13 C 0 1 Y N N -24.151 9.141 -1.521 -0.136 -2.318 -0.444 C13 BC3 13 BC3 N14 N14 N 0 1 Y N N -25.086 8.194 -1.627 -1.350 -2.308 0.170 N14 BC3 14 BC3 C15 C15 C 0 1 Y N N -24.675 7.099 -0.993 -1.847 -1.022 0.149 C15 BC3 15 BC3 C16 C16 C 0 1 N N N -25.249 5.850 -0.799 -3.030 -0.423 0.621 C16 BC3 16 BC3 O17 O17 O 0 1 N N N -26.359 5.593 -1.262 -3.879 -1.085 1.194 O17 BC3 17 BC3 N18 N18 N 0 1 N N N -24.544 4.891 -0.068 -3.199 0.904 0.432 N18 BC3 18 BC3 HN01 HN01 H 0 0 N N N -21.723 4.690 1.441 -1.781 3.519 -0.849 HN01 BC3 19 BC3 HN0A HN0A H 0 0 N N N -22.917 3.385 1.342 -3.267 3.399 -0.074 HN0A BC3 20 BC3 H06 H06 H 0 1 N N N -22.101 10.454 -0.146 1.839 -1.522 -2.110 H06 BC3 21 BC3 H06A H06A H 0 0 N N N -21.321 8.914 0.352 1.187 0.123 -2.306 H06A BC3 22 BC3 H08 H08 H 0 1 N N N -21.017 7.384 -2.088 3.335 -2.061 -0.236 H08 BC3 23 BC3 H09 H09 H 0 1 N N N -19.530 7.568 -4.074 4.966 -1.131 1.394 H09 BC3 24 BC3 H10 H10 H 0 1 N N N -18.655 9.783 -4.726 4.922 1.278 1.900 H10 BC3 25 BC3 H12 H12 H 0 1 N N N -20.644 11.614 -1.569 1.765 1.879 -0.727 H12 BC3 26 BC3 H13 H13 H 0 1 N N N -24.218 10.134 -1.941 0.489 -3.189 -0.576 H13 BC3 27 BC3 HN14 HN14 H 0 0 N N N -25.958 8.292 -2.107 -1.794 -3.079 0.559 HN14 BC3 28 BC3 HN18 HN18 H 0 0 N N N -24.935 3.984 0.087 -4.006 1.338 0.754 HN18 BC3 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BC3 N01 C02 SING N N 1 BC3 C02 N03 DOUB N N 2 BC3 C02 N18 SING N N 3 BC3 N03 C04 SING N N 4 BC3 C04 C05 SING Y N 5 BC3 C04 C15 DOUB Y N 6 BC3 C05 C06 SING N N 7 BC3 C05 C13 DOUB Y N 8 BC3 C06 C07 SING N N 9 BC3 C07 C08 DOUB Y N 10 BC3 C07 C12 SING Y N 11 BC3 C08 C09 SING Y N 12 BC3 C09 C10 DOUB Y N 13 BC3 C10 N11 SING Y N 14 BC3 N11 C12 DOUB Y N 15 BC3 C13 N14 SING Y N 16 BC3 N14 C15 SING Y N 17 BC3 C15 C16 SING N N 18 BC3 C16 O17 DOUB N N 19 BC3 C16 N18 SING N N 20 BC3 N01 HN01 SING N N 21 BC3 N01 HN0A SING N N 22 BC3 C06 H06 SING N N 23 BC3 C06 H06A SING N N 24 BC3 C08 H08 SING N N 25 BC3 C09 H09 SING N N 26 BC3 C10 H10 SING N N 27 BC3 C12 H12 SING N N 28 BC3 C13 H13 SING N N 29 BC3 N14 HN14 SING N N 30 BC3 N18 HN18 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BC3 SMILES ACDLabs 10.04 "O=C1c2c(N=C(N1)N)c(cn2)Cc3cccnc3" BC3 SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2c(Cc3cccnc3)c[nH]c2C(=O)N1" BC3 SMILES CACTVS 3.341 "NC1=Nc2c(Cc3cccnc3)c[nH]c2C(=O)N1" BC3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cnc1)Cc2c[nH]c3c2N=C(NC3=O)N" BC3 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(cnc1)Cc2c[nH]c3c2N=C(NC3=O)N" BC3 InChI InChI 1.03 "InChI=1S/C12H11N5O/c13-12-16-9-8(4-7-2-1-3-14-5-7)6-15-10(9)11(18)17-12/h1-3,5-6,15H,4H2,(H3,13,16,17,18)" BC3 InChIKey InChI 1.03 DOHVAKFYAHLCJP-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BC3 "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-7-(pyridin-3-ylmethyl)-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one" BC3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-amino-7-(pyridin-3-ylmethyl)-3,5-dihydropyrrolo[2,3-e]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BC3 "Create component" 2008-06-25 RCSB BC3 "Modify aromatic_flag" 2011-06-04 RCSB BC3 "Modify descriptor" 2011-06-04 RCSB BC3 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BC3 _pdbx_chem_comp_synonyms.name "peldesine,BCX-34" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##