data_BD1 # _chem_comp.id BD1 _chem_comp.name "3A,4,7,7A-TETRAHYDRO-BENZO [1,3] DIOXOL-2-ONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H10 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 142.152 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BD1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HL7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BD1 C1 C1 C 0 1 N N N N N N 111.198 12.406 80.743 -0.672 0.503 -2.291 C1 BD1 1 BD1 C2 C2 C 0 1 N N N N N N 109.775 12.941 80.771 -1.433 0.222 -1.039 C2 BD1 2 BD1 C3 C3 C 0 1 N N S N N N 109.273 13.213 82.197 -0.738 -0.809 -0.146 C3 BD1 3 BD1 O3 O3 O 0 1 N N N N N N 109.518 14.569 82.603 -1.128 -0.458 1.213 O3 BD1 4 BD1 C4 C4 C 0 1 N N R N N N 109.981 12.369 83.252 0.779 -0.538 -0.083 C4 BD1 5 BD1 O4 O4 O 0 1 N N N N N N 111.022 13.226 83.759 0.838 0.682 0.659 O4 BD1 6 BD1 C5 C5 C 0 1 N N N N N N 110.510 11.069 82.641 1.420 -0.468 -1.446 C5 BD1 7 BD1 C6 C6 C 0 1 N N N N N N 111.567 11.479 81.644 0.575 0.220 -2.471 C6 BD1 8 BD1 C7 C7 C 0 1 N N R N N N 110.788 14.582 83.306 -0.171 0.508 1.676 C7 BD1 9 BD1 O1 O1 O 0 1 N N N N N N 110.748 15.518 84.408 0.436 0.042 2.882 O1 BD1 10 BD1 H1 H1 H 0 1 N N N N N N 111.891 12.760 80.021 -1.202 0.976 -3.105 H1 BD1 11 BD1 H2C1 1H2C H 0 0 N N N N N N 109.741 13.881 80.201 -2.423 -0.150 -1.305 H2C1 BD1 12 BD1 H2C2 2H2C H 0 0 N N N N N N 109.122 12.174 80.329 -1.548 1.151 -0.481 H2C2 BD1 13 BD1 H3 H3 H 0 1 N N N N N N 108.200 12.975 82.146 -0.980 -1.838 -0.415 H3 BD1 14 BD1 H4 H4 H 0 1 N N N N N N 109.317 12.040 84.065 1.276 -1.310 0.503 H4 BD1 15 BD1 H5C1 1H5C H 0 0 N N N N N N 109.698 10.526 82.136 1.615 -1.487 -1.778 H5C1 BD1 16 BD1 H5C2 2H5C H 0 0 N N N N N N 110.920 10.399 83.411 2.371 0.059 -1.364 H5C2 BD1 17 BD1 H6 H6 H 0 1 N N N N N N 112.543 11.061 81.654 1.032 0.495 -3.410 H6 BD1 18 BD1 H7 H7 H 0 1 N N N N N N 111.609 14.912 82.652 -0.671 1.458 1.861 H7 BD1 19 BD1 HA HA H 0 1 N N N N N N 109.806 15.715 84.640 1.066 0.722 3.159 HA BD1 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BD1 C1 C2 SING N N 1 BD1 C1 C6 DOUB N N 2 BD1 C1 H1 SING N N 3 BD1 C2 C3 SING N N 4 BD1 C2 H2C1 SING N N 5 BD1 C2 H2C2 SING N N 6 BD1 C3 O3 SING N N 7 BD1 C3 C4 SING N N 8 BD1 C3 H3 SING N N 9 BD1 O3 C7 SING N N 10 BD1 C4 O4 SING N N 11 BD1 C4 C5 SING N N 12 BD1 C4 H4 SING N N 13 BD1 O4 C7 SING N N 14 BD1 C5 C6 SING N N 15 BD1 C5 H5C1 SING N N 16 BD1 C5 H5C2 SING N N 17 BD1 C6 H6 SING N N 18 BD1 C7 O1 SING N N 19 BD1 C7 H7 SING N N 20 BD1 O1 HA SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BD1 SMILES ACDLabs 10.04 O1C2CC=CCC2OC1O BD1 SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1O[C@H]2CC=CC[C@H]2O1" BD1 SMILES CACTVS 3.341 "O[CH]1O[CH]2CC=CC[CH]2O1" BD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1C=CC[C@@H]2[C@H]1OC(O2)O" BD1 SMILES "OpenEye OEToolkits" 1.5.0 "C1C=CCC2C1OC(O2)O" BD1 InChI InChI 1.03 "InChI=1S/C7H10O3/c8-7-9-5-3-1-2-4-6(5)10-7/h1-2,5-8H,3-4H2/t5-,6+,7+" BD1 InChIKey InChI 1.03 VYBGCFNFGGLKAA-ZMONIFLSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BD1 "SYSTEMATIC NAME" ACDLabs 10.04 "(2r,3aR,7aS)-3a,4,7,7a-tetrahydro-1,3-benzodioxol-2-ol" BD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3aR,7aS)-3a,4,7,7a-tetrahydro-1,3-benzodioxol-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BD1 "Create component" 2003-03-14 EBI BD1 "Modify descriptor" 2011-06-04 RCSB BD1 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id BD1 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C7 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #