data_BD5 # _chem_comp.id BD5 _chem_comp.name "N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H35 N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-06-22 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 625.668 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BD5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HXB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BD5 C43 C43 C 0 1 Y N N 5.844 18.880 27.391 -6.168 -2.178 -0.088 C43 BD5 1 BD5 C42 C42 C 0 1 Y N N 5.350 20.185 27.365 -5.865 -3.418 -0.617 C42 BD5 2 BD5 C41 C41 C 0 1 Y N N 3.985 20.419 27.206 -6.149 -3.692 -1.947 C41 BD5 3 BD5 O44 O44 O 0 1 N N N 3.507 21.693 27.179 -5.852 -4.911 -2.469 O44 BD5 4 BD5 C40 C40 C 0 1 Y N N 3.114 19.340 27.074 -6.737 -2.720 -2.742 C40 BD5 5 BD5 C39 C39 C 0 1 Y N N 3.600 18.032 27.101 -7.039 -1.482 -2.209 C39 BD5 6 BD5 C38 C38 C 0 1 Y N N 4.969 17.797 27.251 -6.754 -1.211 -0.883 C38 BD5 7 BD5 C37 C37 C 0 1 N N N 5.497 16.353 27.292 -7.085 0.140 -0.304 C37 BD5 8 BD5 C35 C35 C 0 1 N N S 5.882 15.693 25.936 -5.890 1.079 -0.485 C35 BD5 9 BD5 C36 C36 C 0 1 N N N 4.903 14.558 25.546 -6.263 2.462 -0.018 C36 BD5 10 BD5 O45 O45 O 0 1 N N N 4.393 14.637 24.586 -7.280 3.116 -0.600 O45 BD5 11 BD5 O46 O46 O 0 1 N N N 4.777 13.611 26.351 -5.645 2.983 0.881 O46 BD5 12 BD5 N33 N33 N 0 1 N N N 5.931 16.596 24.769 -4.757 0.586 0.302 N33 BD5 13 BD5 C32 C32 C 0 1 N N N 7.050 16.851 24.099 -3.498 0.906 -0.056 C32 BD5 14 BD5 O34 O34 O 0 1 N N N 8.147 16.368 24.378 -3.302 1.602 -1.030 O34 BD5 15 BD5 C24 C24 C 0 1 N N S 6.834 17.759 22.868 -2.333 0.399 0.754 C24 BD5 16 BD5 C25 C25 C 0 1 N N N 7.660 17.206 21.639 -2.450 0.910 2.192 C25 BD5 17 BD5 C26 C26 C 0 1 Y N N 7.910 18.214 20.491 -1.354 0.304 3.031 C26 BD5 18 BD5 C31 C31 C 0 1 Y N N 9.091 18.158 19.770 -0.136 0.948 3.146 C31 BD5 19 BD5 C30 C30 C 0 1 Y N N 9.311 19.079 18.756 0.868 0.393 3.916 C30 BD5 20 BD5 C29 C29 C 0 1 Y N N 8.384 20.059 18.433 0.655 -0.806 4.571 C29 BD5 21 BD5 C28 C28 C 0 1 Y N N 7.199 20.125 19.136 -0.563 -1.449 4.456 C28 BD5 22 BD5 C27 C27 C 0 1 Y N N 6.986 19.200 20.147 -1.569 -0.892 3.690 C27 BD5 23 BD5 N22 N22 N 0 1 N N N 6.877 19.240 23.043 -1.081 0.881 0.165 N22 BD5 24 BD5 C21 C21 C 0 1 N N N 5.817 19.918 23.532 0.064 0.199 0.363 C21 BD5 25 BD5 O23 O23 O 0 1 N N N 4.765 19.378 23.900 0.059 -0.814 1.030 O23 BD5 26 BD5 C12 C12 C 0 1 N N R 5.890 21.481 23.540 1.351 0.696 -0.243 C12 BD5 27 BD5 C13 C13 C 0 1 N N N 5.822 22.245 24.914 1.658 2.097 0.289 C13 BD5 28 BD5 C14 C14 C 0 1 Y N N 6.243 23.724 24.735 2.878 2.643 -0.409 C14 BD5 29 BD5 C19 C19 C 0 1 Y N N 7.133 24.275 25.667 2.737 3.368 -1.578 C19 BD5 30 BD5 C18 C18 C 0 1 Y N N 7.548 25.597 25.525 3.854 3.869 -2.219 C18 BD5 31 BD5 C17 C17 C 0 1 Y N N 7.095 26.367 24.451 5.116 3.644 -1.690 C17 BD5 32 BD5 O20 O20 O 0 1 N N N 7.525 27.635 24.346 6.215 4.136 -2.319 O20 BD5 33 BD5 C16 C16 C 0 1 Y N N 6.227 25.835 23.499 5.254 2.917 -0.516 C16 BD5 34 BD5 C15 C15 C 0 1 Y N N 5.801 24.510 23.647 4.134 2.422 0.124 C15 BD5 35 BD5 N10 N10 N 0 1 N N N 6.820 22.039 22.472 2.443 -0.213 0.117 N10 BD5 36 BD5 C9 C9 C 0 1 N N N 8.137 22.361 22.473 3.536 -0.296 -0.667 C9 BD5 37 BD5 O11 O11 O 0 1 N N N 8.952 22.217 23.384 3.617 0.383 -1.671 O11 BD5 38 BD5 O8 O8 O 0 1 N N N 8.606 22.866 21.284 4.539 -1.131 -0.336 O8 BD5 39 BD5 C7 C7 C 0 1 N N N 8.588 24.282 21.043 5.686 -1.169 -1.226 C7 BD5 40 BD5 C3 C3 C 0 1 Y N N 7.736 24.856 20.119 6.699 -2.152 -0.699 C3 BD5 41 BD5 C2 C2 C 0 1 Y N N 6.738 24.074 19.518 6.644 -3.477 -1.089 C2 BD5 42 BD5 C1 C1 C 0 1 Y N N 5.854 24.620 18.586 7.574 -4.379 -0.606 C1 BD5 43 BD5 C6 C6 C 0 1 Y N N 5.986 25.971 18.273 8.558 -3.956 0.268 C6 BD5 44 BD5 C5 C5 C 0 1 Y N N 6.985 26.749 18.880 8.613 -2.631 0.658 C5 BD5 45 BD5 C4 C4 C 0 1 Y N N 7.880 26.212 19.810 7.686 -1.728 0.171 C4 BD5 46 BD5 H43 H43 H 0 1 N N N 6.902 18.706 27.519 -5.951 -1.966 0.948 H43 BD5 47 BD5 H42 H42 H 0 1 N N N 6.029 21.018 27.469 -5.406 -4.173 0.005 H42 BD5 48 BD5 HO44 HO44 H 0 0 N N N 3.396 22.009 28.068 -6.566 -5.558 -2.389 HO44 BD5 49 BD5 H40 H40 H 0 1 N N N 2.056 19.517 26.950 -6.959 -2.931 -3.778 H40 BD5 50 BD5 H39 H39 H 0 1 N N N 2.917 17.201 27.006 -7.497 -0.724 -2.828 H39 BD5 51 BD5 H37 H37 H 0 1 N N N 6.405 16.362 27.913 -7.953 0.553 -0.817 H37 BD5 52 BD5 H37A H37A H 0 0 N N N 4.659 15.752 27.675 -7.306 0.036 0.758 H37A BD5 53 BD5 H35 H35 H 0 1 N N N 6.899 15.329 26.142 -5.613 1.114 -1.539 H35 BD5 54 BD5 HN33 HN33 H 0 0 N N N 5.084 17.035 24.469 -4.914 0.029 1.081 HN33 BD5 55 BD5 H24 H24 H 0 1 N N N 5.758 17.673 22.655 -2.338 -0.691 0.755 H24 BD5 56 BD5 H25 H25 H 0 1 N N N 8.642 16.887 22.018 -2.356 1.996 2.200 H25 BD5 57 BD5 H25A H25A H 0 0 N N N 7.055 16.396 21.206 -3.420 0.626 2.600 H25A BD5 58 BD5 H31 H31 H 0 1 N N N 9.833 17.406 19.995 0.030 1.885 2.635 H31 BD5 59 BD5 H30 H30 H 0 1 N N N 10.235 19.031 18.199 1.820 0.895 4.006 H30 BD5 60 BD5 H29 H29 H 0 1 N N N 8.588 20.763 17.640 1.441 -1.240 5.172 H29 BD5 61 BD5 H28 H28 H 0 1 N N N 6.458 20.876 18.906 -0.729 -2.386 4.967 H28 BD5 62 BD5 H27 H27 H 0 1 N N N 6.057 19.246 20.696 -2.522 -1.392 3.603 H27 BD5 63 BD5 HN22 HN22 H 0 0 N N N 7.706 19.740 22.793 -1.077 1.691 -0.369 HN22 BD5 64 BD5 H12 H12 H 0 1 N N N 4.878 21.766 23.217 1.252 0.732 -1.328 H12 BD5 65 BD5 H13 H13 H 0 1 N N N 4.791 22.208 25.296 0.808 2.752 0.099 H13 BD5 66 BD5 H13A H13A H 0 0 N N N 6.510 21.763 25.624 1.846 2.046 1.361 H13A BD5 67 BD5 H19 H19 H 0 1 N N N 7.495 23.678 26.491 1.755 3.543 -1.990 H19 BD5 68 BD5 H18 H18 H 0 1 N N N 8.223 26.029 26.249 3.744 4.435 -3.133 H18 BD5 69 BD5 HO20 HO20 H 0 0 N N N 7.627 28.008 25.214 6.469 5.024 -2.031 HO20 BD5 70 BD5 H16 H16 H 0 1 N N N 5.890 26.433 22.665 6.236 2.740 -0.102 H16 BD5 71 BD5 H15 H15 H 0 1 N N N 5.126 24.083 22.920 4.241 1.860 1.040 H15 BD5 72 BD5 HN10 HN10 H 0 0 N N N 6.369 22.200 21.594 2.378 -0.755 0.919 HN10 BD5 73 BD5 H7 H7 H 0 1 N N N 8.328 24.741 22.008 5.364 -1.477 -2.221 H7 BD5 74 BD5 H7A H7A H 0 1 N N N 9.578 24.462 20.600 6.136 -0.178 -1.281 H7A BD5 75 BD5 H2 H2 H 0 1 N N N 6.652 23.030 19.781 5.875 -3.808 -1.772 H2 BD5 76 BD5 H1 H1 H 0 1 N N N 5.091 24.013 18.122 7.530 -5.414 -0.910 H1 BD5 77 BD5 H6 H6 H 0 1 N N N 5.315 26.423 17.558 9.283 -4.661 0.646 H6 BD5 78 BD5 H5 H5 H 0 1 N N N 7.064 27.794 18.620 9.382 -2.300 1.341 H5 BD5 79 BD5 H4 H4 H 0 1 N N N 8.648 26.817 20.269 7.732 -0.692 0.472 H4 BD5 80 BD5 H351 H351 H 0 0 N N N 3.839 13.876 24.457 -7.482 4.001 -0.266 H351 BD5 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BD5 C43 C42 DOUB Y N 1 BD5 C43 C38 SING Y N 2 BD5 C43 H43 SING N N 3 BD5 C42 C41 SING Y N 4 BD5 C42 H42 SING N N 5 BD5 C41 O44 SING N N 6 BD5 C41 C40 DOUB Y N 7 BD5 O44 HO44 SING N N 8 BD5 C40 C39 SING Y N 9 BD5 C40 H40 SING N N 10 BD5 C39 C38 DOUB Y N 11 BD5 C39 H39 SING N N 12 BD5 C38 C37 SING N N 13 BD5 C37 C35 SING N N 14 BD5 C37 H37 SING N N 15 BD5 C37 H37A SING N N 16 BD5 C35 C36 SING N N 17 BD5 C35 N33 SING N N 18 BD5 C35 H35 SING N N 19 BD5 C36 O45 SING N N 20 BD5 C36 O46 DOUB N N 21 BD5 N33 C32 SING N N 22 BD5 N33 HN33 SING N N 23 BD5 C32 O34 DOUB N N 24 BD5 C32 C24 SING N N 25 BD5 C24 C25 SING N N 26 BD5 C24 N22 SING N N 27 BD5 C24 H24 SING N N 28 BD5 C25 C26 SING N N 29 BD5 C25 H25 SING N N 30 BD5 C25 H25A SING N N 31 BD5 C26 C31 DOUB Y N 32 BD5 C26 C27 SING Y N 33 BD5 C31 C30 SING Y N 34 BD5 C31 H31 SING N N 35 BD5 C30 C29 DOUB Y N 36 BD5 C30 H30 SING N N 37 BD5 C29 C28 SING Y N 38 BD5 C29 H29 SING N N 39 BD5 C28 C27 DOUB Y N 40 BD5 C28 H28 SING N N 41 BD5 C27 H27 SING N N 42 BD5 N22 C21 SING N N 43 BD5 N22 HN22 SING N N 44 BD5 C21 O23 DOUB N N 45 BD5 C21 C12 SING N N 46 BD5 C12 C13 SING N N 47 BD5 C12 N10 SING N N 48 BD5 C12 H12 SING N N 49 BD5 C13 C14 SING N N 50 BD5 C13 H13 SING N N 51 BD5 C13 H13A SING N N 52 BD5 C14 C19 DOUB Y N 53 BD5 C14 C15 SING Y N 54 BD5 C19 C18 SING Y N 55 BD5 C19 H19 SING N N 56 BD5 C18 C17 DOUB Y N 57 BD5 C18 H18 SING N N 58 BD5 C17 O20 SING N N 59 BD5 C17 C16 SING Y N 60 BD5 O20 HO20 SING N N 61 BD5 C16 C15 DOUB Y N 62 BD5 C16 H16 SING N N 63 BD5 C15 H15 SING N N 64 BD5 N10 C9 SING N N 65 BD5 N10 HN10 SING N N 66 BD5 C9 O11 DOUB N N 67 BD5 C9 O8 SING N N 68 BD5 O8 C7 SING N N 69 BD5 C7 C3 SING N N 70 BD5 C7 H7 SING N N 71 BD5 C7 H7A SING N N 72 BD5 C3 C2 DOUB Y N 73 BD5 C3 C4 SING Y N 74 BD5 C2 C1 SING Y N 75 BD5 C2 H2 SING N N 76 BD5 C1 C6 DOUB Y N 77 BD5 C1 H1 SING N N 78 BD5 C6 C5 SING Y N 79 BD5 C6 H6 SING N N 80 BD5 C5 C4 DOUB Y N 81 BD5 C5 H5 SING N N 82 BD5 C4 H4 SING N N 83 BD5 O45 H351 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BD5 SMILES ACDLabs 10.04 "O=C(OCc1ccccc1)NC(C(=O)NC(C(=O)NC(C(=O)O)Cc2ccc(O)cc2)Cc3ccccc3)Cc4ccc(O)cc4" BD5 SMILES_CANONICAL CACTVS 3.341 "OC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](Cc3ccc(O)cc3)NC(=O)OCc4ccccc4" BD5 SMILES CACTVS 3.341 "OC(=O)[CH](Cc1ccc(O)cc1)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](Cc3ccc(O)cc3)NC(=O)OCc4ccccc4" BD5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C[C@@H](C(=O)N[C@@H](Cc2ccc(cc2)O)C(=O)O)NC(=O)[C@@H](Cc3ccc(cc3)O)NC(=O)OCc4ccccc4" BD5 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CC(C(=O)NC(Cc2ccc(cc2)O)C(=O)O)NC(=O)C(Cc3ccc(cc3)O)NC(=O)OCc4ccccc4" BD5 InChI InChI 1.03 "InChI=1S/C35H35N3O8/c39-27-15-11-24(12-16-27)20-30(38-35(45)46-22-26-9-5-2-6-10-26)33(42)36-29(19-23-7-3-1-4-8-23)32(41)37-31(34(43)44)21-25-13-17-28(40)18-14-25/h1-18,29-31,39-40H,19-22H2,(H,36,42)(H,37,41)(H,38,45)(H,43,44)/t29-,30+,31-/m0/s1" BD5 InChIKey InChI 1.03 NYJFXELTSYMIOY-YPKYBTACSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BD5 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine" BD5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-3-(4-hydroxyphenyl)-2-[[(2S)-2-[[(2R)-3-(4-hydroxyphenyl)-2-phenylmethoxycarbonylamino-propanoyl]amino]-3-phenyl-propanoyl]amino]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BD5 "Create component" 2009-06-22 RCSB BD5 "Modify aromatic_flag" 2011-06-04 RCSB BD5 "Modify descriptor" 2011-06-04 RCSB #