data_BDG
#

_chem_comp.id                                   BDG
_chem_comp.name                                 "2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H14 N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;O-2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSE; 2,6-diamino-2,6-dideoxy-alpha-D-glucose;
2,6-diamino-2,6-dideoxy-D-glucose; 2,6-diamino-2,6-dideoxy-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       178.186
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BDG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1QD3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  BDG  "O-2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSE"  PDB  ?  
2  BDG  "2,6-diamino-2,6-dideoxy-alpha-D-glucose"          PDB  ?  
3  BDG  "2,6-diamino-2,6-dideoxy-D-glucose"                PDB  ?  
4  BDG  "2,6-diamino-2,6-dideoxy-glucose"                  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BDG  C5    C5    C  0  1  N  N  R  7.407   3.021  3.058  -0.055   0.088   1.153  C5    BDG   1  
BDG  O5    O5    O  0  1  N  N  N  8.574   2.187  2.901   1.083  -0.696   0.805  O5    BDG   2  
BDG  C1    C1    C  0  1  N  N  S  8.266   0.775  2.848   1.573  -0.215  -0.444  C1    BDG   3  
BDG  O1    O1    O  0  1  N  Y  N  7.499   0.430  1.668   1.770   1.197  -0.365  O1    BDG   4  
BDG  C2    C2    C  0  1  N  N  R  7.544   0.331  4.126   0.562  -0.525  -1.551  C2    BDG   5  
BDG  N2    N2    N  0  1  N  N  N  7.056  -1.027  3.973   1.085  -0.054  -2.840  N2    BDG   6  
BDG  C3    C3    C  0  1  N  N  R  6.374   1.249  4.462  -0.756   0.189  -1.237  C3    BDG   7  
BDG  O3    O3    O  0  1  N  N  N  5.888   0.948  5.761  -1.753  -0.207  -2.181  O3    BDG   8  
BDG  C4    C4    C  0  1  N  N  S  6.729   2.726  4.386  -1.198  -0.198   0.177  C4    BDG   9  
BDG  O4    O4    O  0  1  N  N  N  5.561   3.522  4.523  -2.346   0.569   0.547  O4    BDG  10  
BDG  C6    C6    C  0  1  N  N  N  7.813   4.492  3.062  -0.500  -0.262   2.575  C6    BDG  11  
BDG  N6    N6    N  0  1  N  N  N  8.971   4.708  2.214   0.595   0.015   3.513  N6    BDG  12  
BDG  H5    H5    H  0  1  N  N  N  6.730   2.778  2.227   0.205   1.145   1.106  H5    BDG  13  
BDG  H1    H1    H  0  1  N  N  N  9.219   0.246  2.786   2.521  -0.702  -0.673  H1    BDG  14  
BDG  HO1   HO1   H  0  1  N  Y  N  7.296  -0.497  1.633   2.416   1.350   0.338  HO1   BDG  15  
BDG  H2    H2    H  0  1  N  N  N  8.255   0.388  4.960   0.391  -1.601  -1.598  H2    BDG  16  
BDG  HN21  HN21  H  0  0  N  N  N  6.747  -1.342  3.097   1.952  -0.545  -2.998  HN21  BDG  17  
BDG  HN22  HN22  H  0  0  N  Y  N  6.424  -1.363  4.644   0.439  -0.370  -3.548  HN22  BDG  18  
BDG  H3    H3    H  0  1  N  N  N  5.623   1.074  3.697  -0.609   1.268  -1.293  H3    BDG  19  
BDG  HO3   HO3   H  0  1  N  Y  N  6.552   1.141  6.440  -1.426   0.044  -3.055  HO3   BDG  20  
BDG  H4    H4    H  0  1  N  N  N  7.428   2.989  5.178  -1.445  -1.259   0.204  H4    BDG  21  
BDG  HO4   HO4   H  0  1  N  Y  N  5.105   3.299  5.341  -3.038   0.364  -0.096  HO4   BDG  22  
BDG  H61   H61   H  0  1  N  N  N  7.983   4.740  4.133  -0.761  -1.319   2.623  H61   BDG  23  
BDG  H62   H62   H  0  1  N  N  N  6.940   5.076  2.757  -1.369   0.338   2.842  H62   BDG  24  
BDG  HN61  HN61  H  0  0  N  N  N  9.840   4.328  2.460   0.258  -0.229   4.432  HN61  BDG  25  
BDG  HN62  HN62  H  0  0  N  N  N  9.136   5.592  1.823   1.336  -0.633   3.293  HN62  BDG  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BDG  C5  O5    SING  N  N   1  
BDG  C5  C4    SING  N  N   2  
BDG  C5  C6    SING  N  N   3  
BDG  C5  H5    SING  N  N   4  
BDG  O5  C1    SING  N  N   5  
BDG  C1  O1    SING  N  N   6  
BDG  C1  C2    SING  N  N   7  
BDG  C1  H1    SING  N  N   8  
BDG  O1  HO1   SING  N  N   9  
BDG  C2  N2    SING  N  N  10  
BDG  C2  C3    SING  N  N  11  
BDG  C2  H2    SING  N  N  12  
BDG  N2  HN21  SING  N  N  13  
BDG  N2  HN22  SING  N  N  14  
BDG  C3  O3    SING  N  N  15  
BDG  C3  C4    SING  N  N  16  
BDG  C3  H3    SING  N  N  17  
BDG  O3  HO3   SING  N  N  18  
BDG  C4  O4    SING  N  N  19  
BDG  C4  H4    SING  N  N  20  
BDG  O4  HO4   SING  N  N  21  
BDG  C6  N6    SING  N  N  22  
BDG  C6  H61   SING  N  N  23  
BDG  C6  H62   SING  N  N  24  
BDG  N6  HN61  SING  N  N  25  
BDG  N6  HN62  SING  N  N  26  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BDG  SMILES            ACDLabs               10.04  "OC1C(O)C(OC(O)C1N)CN"  
BDG  SMILES_CANONICAL  CACTVS                3.341  "NC[C@H]1O[C@H](O)[C@H](N)[C@@H](O)[C@@H]1O"  
BDG  SMILES            CACTVS                3.341  "NC[CH]1O[CH](O)[CH](N)[CH](O)[CH]1O"  
BDG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)N)O)O)N"  
BDG  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)O)N)O)O)N"  
BDG  InChI             InChI                 1.03   "InChI=1S/C6H14N2O4/c7-1-2-4(9)5(10)3(8)6(11)12-2/h2-6,9-11H,1,7-8H2/t2-,3-,4-,5-,6+/m1/s1"  
BDG  InChIKey          InChI                 1.03   SQTHUUHOUPJYLK-UKFBFLRUSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BDG  "SYSTEMATIC NAME"                      ACDLabs               10.04  "2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose"  
BDG  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2S,3R,4R,5S,6R)-3-amino-6-(aminomethyl)oxane-2,4,5-triol"  
BDG  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcpN[6N]a  
BDG  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-GlcpN6N  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
BDG  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
BDG  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
BDG  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
BDG  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BDG  "Create component"          1999-07-08  RCSB  
BDG  "Modify descriptor"         2011-06-04  RCSB  
BDG  "Other modification"        2020-07-03  RCSB  
BDG  "Modify name"               2020-07-17  RCSB  
BDG  "Modify synonyms"           2020-07-17  RCSB  
BDG  "Modify linking type"       2020-07-17  RCSB  
BDG  "Modify leaving atom flag"  2020-07-17  RCSB  
##