data_BDK # _chem_comp.id BDK _chem_comp.name "2-[5-AMINO-6-OXO-2-(2-THIENYL)-1,6-DIHYDROPYRIMIDIN-1-YL)-N-[3,3-DIFLUORO -1-ISOPROPYL-2-OXO-3-(N-(2-MORPHOLINO ETHYL)CARBAMOYL]PROPYL]ACETAMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H30 F2 N6 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.583 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BDK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EAU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BDK C1 C1 C 0 1 N N N -7.383 22.549 36.519 3.349 0.166 -1.666 C1 BDK 1 BDK C2 C2 C 0 1 N N N -8.052 23.720 37.326 2.960 -0.525 -0.385 C2 BDK 2 BDK C3 C3 C 0 1 N N S -9.568 23.609 37.433 2.163 0.213 0.658 C3 BDK 3 BDK C4 C4 C 0 1 N N N -10.385 24.850 37.806 3.107 0.749 1.736 C4 BDK 4 BDK C5 C5 C 0 1 N N N -11.840 24.728 37.441 3.705 -0.420 2.519 C5 BDK 5 BDK C6 C6 C 0 1 N N N -10.211 25.288 39.247 4.232 1.549 1.076 C6 BDK 6 BDK C7 C7 C 0 1 N N N -10.545 21.374 37.871 0.023 -0.223 1.738 C7 BDK 7 BDK C8 C8 C 0 1 N N N -10.764 20.285 38.934 -0.974 -1.162 2.366 C8 BDK 8 BDK C9 C9 C 0 1 Y N N -13.228 20.193 38.650 -3.184 -0.219 1.939 C9 BDK 9 BDK C10 C10 C 0 1 Y N N -14.412 19.382 38.375 -4.308 0.514 2.382 C10 BDK 10 BDK C11 C11 C 0 1 Y N N -14.266 18.052 38.299 -4.310 1.011 3.668 C11 BDK 11 BDK C12 C12 C 0 1 Y N N -11.944 18.133 38.461 -2.219 0.107 4.059 C12 BDK 12 BDK C13 C13 C 0 1 Y N N -10.662 17.376 38.328 -1.094 -0.101 4.977 C13 BDK 13 BDK C14 C14 C 0 1 Y N N -10.303 16.148 38.864 -1.057 0.028 6.356 C14 BDK 14 BDK C15 C15 C 0 1 Y N N -9.009 15.749 38.480 0.140 -0.235 6.977 C15 BDK 15 BDK C16 C16 C 0 1 Y N N -8.388 16.651 37.582 1.212 -0.591 6.225 C16 BDK 16 BDK C17 C17 C 0 1 N N N -7.421 22.861 34.999 2.107 0.631 -2.382 C17 BDK 17 BDK C18 C18 C 0 1 N N N -6.063 23.019 32.977 0.291 0.273 -3.966 C18 BDK 18 BDK C19 C19 C 0 1 N N N -6.220 24.369 32.314 -0.196 -0.828 -4.909 C19 BDK 19 BDK C20 C20 C 0 1 N N N -5.072 25.020 30.335 -1.820 -1.472 -6.492 C20 BDK 20 BDK C21 C21 C 0 1 N N N -5.088 25.005 28.818 -2.975 -1.007 -7.379 C21 BDK 21 BDK C22 C22 C 0 1 N N N -7.400 24.940 28.827 -2.176 1.146 -7.366 C22 BDK 22 BDK C23 C23 C 0 1 N N N -7.421 24.944 30.343 -1.000 0.736 -6.478 C23 BDK 23 BDK N1 N1 N 0 1 N N N -9.911 22.461 38.317 1.193 -0.699 1.269 N1 BDK 24 BDK N2 N2 N 0 1 Y N N -12.013 19.517 38.684 -2.154 -0.406 2.793 N2 BDK 25 BDK N3 N3 N 0 1 Y N N -13.045 17.431 38.334 -3.267 0.797 4.466 N3 BDK 26 BDK N4 N4 N 0 1 N N N -15.634 20.055 38.211 -5.400 0.733 1.529 N4 BDK 27 BDK N5 N5 N 0 1 N N N -6.252 23.177 34.438 1.497 -0.179 -3.270 N5 BDK 28 BDK N6 N6 N 0 1 N N N -6.224 24.295 30.863 -1.406 -0.375 -5.608 N6 BDK 29 BDK O1 O1 O 0 1 N N N -7.723 24.890 36.667 3.287 -1.672 -0.195 O1 BDK 30 BDK O2 O2 O 0 1 N N N -10.968 21.253 36.731 -0.227 0.960 1.655 O2 BDK 31 BDK O3 O3 O 0 1 N N N -13.310 21.400 38.828 -3.144 -0.675 0.808 O3 BDK 32 BDK O4 O4 O 0 1 N N N -8.473 22.917 34.408 1.657 1.735 -2.161 O4 BDK 33 BDK O5 O5 O 0 1 N N N -6.267 25.613 28.308 -2.537 0.061 -8.219 O5 BDK 34 BDK F1 F1 F 0 1 N N N -6.130 22.361 36.900 4.159 1.268 -1.373 F1 BDK 35 BDK F2 F2 F 0 1 N N N -7.948 21.362 36.793 4.052 -0.725 -2.483 F2 BDK 36 BDK S1 S1 S 0 1 Y N N -9.397 18.017 37.335 0.583 -0.581 4.609 S1 BDK 37 BDK H3 H3 H 0 1 N N N -9.886 23.454 36.375 1.635 1.044 0.191 H3 BDK 38 BDK H4 H4 H 0 1 N N N -9.954 25.664 37.178 2.552 1.396 2.416 H4 BDK 39 BDK H51 1H5 H 0 1 N N N -12.434 25.631 37.712 4.377 -0.038 3.286 H51 BDK 40 BDK H52 2H5 H 0 1 N N N -11.959 24.482 36.359 2.903 -0.990 2.989 H52 BDK 41 BDK H53 3H5 H 0 1 N N N -12.286 23.808 37.887 4.260 -1.067 1.838 H53 BDK 42 BDK H61 1H6 H 0 1 N N N -10.805 26.191 39.518 4.855 0.879 0.483 H61 BDK 43 BDK H62 2H6 H 0 1 N N N -10.435 24.446 39.942 3.803 2.314 0.429 H62 BDK 44 BDK H63 3H6 H 0 1 N N N -9.132 25.442 39.482 4.840 2.024 1.846 H63 BDK 45 BDK H81 1H8 H 0 1 N N N -9.880 19.609 39.012 -1.270 -1.917 1.638 H81 BDK 46 BDK H82 2H8 H 0 1 N N N -10.748 20.712 39.963 -0.522 -1.647 3.231 H82 BDK 47 BDK H11 H11 H 0 1 N N N -15.183 17.447 38.204 -5.158 1.575 4.027 H11 BDK 48 BDK H14 H14 H 0 1 N N N -10.967 15.558 39.518 -1.933 0.315 6.919 H14 BDK 49 BDK H15 H15 H 0 1 N N N -8.530 14.824 38.845 0.228 -0.154 8.050 H15 BDK 50 BDK H16 H16 H 0 1 N N N -7.397 16.369 37.186 2.214 -0.825 6.553 H16 BDK 51 BDK H181 1H18 H 0 0 N N N -6.742 22.249 32.541 -0.486 0.497 -3.236 H181 BDK 52 BDK H182 2H18 H 0 0 N N N -5.092 22.531 32.724 0.518 1.169 -4.542 H182 BDK 53 BDK H191 1H19 H 0 0 N N N -7.131 24.891 32.687 0.581 -1.053 -5.639 H191 BDK 54 BDK H192 2H19 H 0 0 N N N -5.440 25.081 32.673 -0.424 -1.725 -4.333 H192 BDK 55 BDK H201 1H20 H 0 0 N N N -4.111 24.628 30.744 -0.979 -1.771 -7.117 H201 BDK 56 BDK H202 2H20 H 0 0 N N N -5.013 26.057 30.739 -2.144 -2.321 -5.889 H202 BDK 57 BDK H211 1H21 H 0 0 N N N -4.169 25.474 28.394 -3.315 -1.837 -7.997 H211 BDK 58 BDK H212 2H21 H 0 0 N N N -4.953 23.973 28.417 -3.797 -0.661 -6.752 H212 BDK 59 BDK H221 1H22 H 0 0 N N N -7.473 23.902 28.424 -1.889 2.005 -7.973 H221 BDK 60 BDK H222 2H22 H 0 0 N N N -8.345 25.358 28.408 -3.026 1.414 -6.739 H222 BDK 61 BDK H231 1H23 H 0 0 N N N -7.550 25.971 30.755 -0.694 1.584 -5.865 H231 BDK 62 BDK H232 2H23 H 0 0 N N N -8.353 24.485 30.748 -0.165 0.421 -7.104 H232 BDK 63 BDK HN1 HN1 H 0 1 N N N -9.693 22.415 39.312 1.393 -1.646 1.335 HN1 BDK 64 BDK HN41 1HN4 H 0 0 N N N -16.460 19.488 38.019 -6.166 1.238 1.843 HN41 BDK 65 BDK HN42 2HN4 H 0 0 N N N -15.534 20.763 37.484 -5.388 0.379 0.626 HN42 BDK 66 BDK HN5 HN5 H 0 1 N N N -5.544 23.519 35.087 1.858 -1.062 -3.447 HN5 BDK 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BDK C1 C2 SING N N 1 BDK C1 C17 SING N N 2 BDK C1 F1 SING N N 3 BDK C1 F2 SING N N 4 BDK C2 C3 SING N N 5 BDK C2 O1 DOUB N N 6 BDK C3 C4 SING N N 7 BDK C3 N1 SING N N 8 BDK C3 H3 SING N N 9 BDK C4 C5 SING N N 10 BDK C4 C6 SING N N 11 BDK C4 H4 SING N N 12 BDK C5 H51 SING N N 13 BDK C5 H52 SING N N 14 BDK C5 H53 SING N N 15 BDK C6 H61 SING N N 16 BDK C6 H62 SING N N 17 BDK C6 H63 SING N N 18 BDK C7 C8 SING N N 19 BDK C7 N1 SING N N 20 BDK C7 O2 DOUB N N 21 BDK C8 N2 SING N N 22 BDK C8 H81 SING N N 23 BDK C8 H82 SING N N 24 BDK C9 C10 SING Y N 25 BDK C9 N2 SING Y N 26 BDK C9 O3 DOUB N N 27 BDK C10 C11 DOUB Y N 28 BDK C10 N4 SING N N 29 BDK C11 N3 SING Y N 30 BDK C11 H11 SING N N 31 BDK C12 C13 SING Y N 32 BDK C12 N2 SING Y N 33 BDK C12 N3 DOUB Y N 34 BDK C13 C14 DOUB Y N 35 BDK C13 S1 SING Y N 36 BDK C14 C15 SING Y N 37 BDK C14 H14 SING N N 38 BDK C15 C16 DOUB Y N 39 BDK C15 H15 SING N N 40 BDK C16 S1 SING Y N 41 BDK C16 H16 SING N N 42 BDK C17 N5 SING N N 43 BDK C17 O4 DOUB N N 44 BDK C18 C19 SING N N 45 BDK C18 N5 SING N N 46 BDK C18 H181 SING N N 47 BDK C18 H182 SING N N 48 BDK C19 N6 SING N N 49 BDK C19 H191 SING N N 50 BDK C19 H192 SING N N 51 BDK C20 C21 SING N N 52 BDK C20 N6 SING N N 53 BDK C20 H201 SING N N 54 BDK C20 H202 SING N N 55 BDK C21 O5 SING N N 56 BDK C21 H211 SING N N 57 BDK C21 H212 SING N N 58 BDK C22 C23 SING N N 59 BDK C22 O5 SING N N 60 BDK C22 H221 SING N N 61 BDK C22 H222 SING N N 62 BDK C23 N6 SING N N 63 BDK C23 H231 SING N N 64 BDK C23 H232 SING N N 65 BDK N1 HN1 SING N N 66 BDK N4 HN41 SING N N 67 BDK N4 HN42 SING N N 68 BDK N5 HN5 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BDK SMILES ACDLabs 10.04 "O=C(NCCN1CCOCC1)C(F)(F)C(=O)C(NC(=O)CN2C(=NC=C(N)C2=O)c3sccc3)C(C)C" BDK SMILES_CANONICAL CACTVS 3.341 "CC(C)[C@H](NC(=O)CN1C(=O)C(=CN=C1c2sccc2)N)C(=O)C(F)(F)C(=O)NCCN3CCOCC3" BDK SMILES CACTVS 3.341 "CC(C)[CH](NC(=O)CN1C(=O)C(=CN=C1c2sccc2)N)C(=O)C(F)(F)C(=O)NCCN3CCOCC3" BDK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)[C@@H](C(=O)C(C(=O)NCCN1CCOCC1)(F)F)NC(=O)CN2C(=NC=C(C2=O)N)c3cccs3" BDK SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)C(C(=O)C(C(=O)NCCN1CCOCC1)(F)F)NC(=O)CN2C(=NC=C(C2=O)N)c3cccs3" BDK InChI InChI 1.03 "InChI=1S/C23H30F2N6O5S/c1-14(2)18(19(33)23(24,25)22(35)27-5-6-30-7-9-36-10-8-30)29-17(32)13-31-20(16-4-3-11-37-16)28-12-15(26)21(31)34/h3-4,11-12,14,18H,5-10,13,26H2,1-2H3,(H,27,35)(H,29,32)/t18-/m0/s1" BDK InChIKey InChI 1.03 SZYHELVLDPKTOS-SFHVURJKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDK "SYSTEMATIC NAME" ACDLabs 10.04 "(4S)-4-{[(5-amino-6-oxo-2-thiophen-2-ylpyrimidin-1(6H)-yl)acetyl]amino}-2,2-difluoro-5-methyl-N-(2-morpholin-4-ylethyl)-3-oxohexanamide" BDK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4S)-4-[2-(5-amino-6-oxo-2-thiophen-2-yl-pyrimidin-1-yl)ethanoylamino]-2,2-difluoro-5-methyl-N-(2-morpholin-4-ylethyl)-3-oxo-hexanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BDK "Create component" 1999-07-08 RCSB BDK "Modify aromatic_flag" 2011-06-04 RCSB BDK "Modify descriptor" 2011-06-04 RCSB #