data_BDP # _chem_comp.id BDP _chem_comp.name "beta-D-glucopyranuronic acid" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-D-glucuronic acid; D-glucuronic acid; glucuronic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-11-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.139 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BDP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1GQK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BDP "beta-D-glucuronic acid" PDB ? 2 BDP "D-glucuronic acid" PDB ? 3 BDP "glucuronic acid" PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BDP C1 C1 C 0 1 N N R N N N 8.748 -11.725 3.342 -1.248 1.252 0.387 C1 BDP 1 BDP C2 C2 C 0 1 N N R N N N 9.125 -11.206 4.727 -1.851 -0.001 -0.255 C2 BDP 2 BDP C3 C3 C 0 1 N N S N N N 8.484 -11.996 5.851 -1.037 -1.226 0.173 C3 BDP 3 BDP C4 C4 C 0 1 N N S N N N 6.984 -12.052 5.582 0.427 -1.017 -0.224 C4 BDP 4 BDP C5 C5 C 0 1 N N S N N N 6.755 -12.709 4.238 0.942 0.275 0.417 C5 BDP 5 BDP C6 C6 C 0 1 N N N N N N 5.298 -12.692 3.781 2.364 0.519 -0.016 C6 BDP 6 BDP O2 O2 O 0 1 N N N N N N 10.540 -11.232 4.784 -3.205 -0.153 0.174 O2 BDP 7 BDP O3 O3 O 0 1 N N N N N N 8.730 -11.292 7.057 -1.548 -2.390 -0.480 O3 BDP 8 BDP O4 O4 O 0 1 N N N N N N 6.322 -12.815 6.554 1.209 -2.121 0.235 O4 BDP 9 BDP O5 O5 O 0 1 N N N N N N 7.382 -11.957 3.235 0.123 1.370 0.002 O5 BDP 10 BDP O6A O6A O 0 1 N N N N N N 4.562 -13.559 4.253 2.632 1.482 -0.695 O6A BDP 11 BDP O1 O1 O 0 1 N Y N N N N 8.947 -10.588 2.508 -1.968 2.406 -0.053 O1 BDP 12 BDP O6B O6B O 0 1 N N N N N N 4.954 -11.847 2.932 3.334 -0.333 0.352 O6B BDP 13 BDP H1 H1 H 0 1 N N N N N N 9.311 -12.642 3.111 -1.316 1.173 1.472 H1 BDP 14 BDP H2 H2 H 0 1 N N N N N N 8.743 -10.185 4.873 -1.820 0.096 -1.341 H2 BDP 15 BDP H3 H3 H 0 1 N N N N N N 8.887 -13.017 5.921 -1.108 -1.351 1.253 H3 BDP 16 BDP H4 H4 H 0 1 N N N N N N 6.591 -11.025 5.602 0.504 -0.941 -1.308 H4 BDP 17 BDP H5 H5 H 0 1 N N N N N N 7.127 -13.736 4.371 0.903 0.183 1.503 H5 BDP 18 BDP HO2 HB H 0 1 N Y N N N N 10.829 -10.916 5.632 -3.778 0.591 -0.060 HO2 BDP 19 BDP HO3 HC H 0 1 N Y N N N N 8.340 -11.763 7.784 -2.474 -2.579 -0.279 HO3 BDP 20 BDP HO4 HD H 0 1 N Y N N N N 5.590 -13.271 6.155 2.149 -2.055 0.018 HO4 BDP 21 BDP HO1 HA H 0 1 N Y N N N N 8.735 -10.813 1.610 -1.640 3.237 0.315 HO1 BDP 22 BDP HO6B H6B H 0 0 N N N N N N 4.040 -11.977 2.708 4.231 -0.135 0.050 HO6B BDP 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BDP C1 C2 SING N N 1 BDP C1 O5 SING N N 2 BDP C1 O1 SING N N 3 BDP C1 H1 SING N N 4 BDP C2 C3 SING N N 5 BDP C2 O2 SING N N 6 BDP C2 H2 SING N N 7 BDP C3 C4 SING N N 8 BDP C3 O3 SING N N 9 BDP C3 H3 SING N N 10 BDP C4 C5 SING N N 11 BDP C4 O4 SING N N 12 BDP C4 H4 SING N N 13 BDP C5 C6 SING N N 14 BDP C5 O5 SING N N 15 BDP C5 H5 SING N N 16 BDP C6 O6A DOUB N N 17 BDP C6 O6B SING N N 18 BDP O2 HO2 SING N N 19 BDP O3 HO3 SING N N 20 BDP O4 HO4 SING N N 21 BDP O1 HO1 SING N N 22 BDP O6B HO6B SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BDP SMILES ACDLabs 12.01 "O=C(O)C1OC(O)C(O)C(O)C1O" BDP SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1O)C(O)=O" BDP SMILES CACTVS 3.370 "O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(O)=O" BDP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[C@@H]1([C@@H]([C@H](O[C@H]([C@@H]1O)O)C(=O)O)O)O" BDP SMILES "OpenEye OEToolkits" 1.7.0 "C1(C(C(OC(C1O)O)C(=O)O)O)O" BDP InChI InChI 1.03 "InChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2-,3+,4-,6+/m0/s1" BDP InChIKey InChI 1.03 AEMOLEFTQBMNLQ-QIUUJYRFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDP "SYSTEMATIC NAME" ACDLabs 12.01 "beta-D-glucopyranuronic acid" BDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3S,4S,5R,6R)-3,4,5,6-tetrahydroxyoxane-2-carboxylic acid" BDP "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGlcpAb BDP "COMMON NAME" GMML 1.0 "b-D-glucopyranuronic acid" BDP "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-GlcpA BDP "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 GlcA # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BDP "CARBOHYDRATE ISOMER" D PDB ? BDP "CARBOHYDRATE RING" pyranose PDB ? BDP "CARBOHYDRATE ANOMER" beta PDB ? BDP "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BDP "Create component" 2001-11-26 EBI BDP "Modify descriptor" 2011-06-04 RCSB BDP "Other modification" 2019-08-12 RCSB BDP "Other modification" 2019-12-19 RCSB BDP "Other modification" 2020-07-03 RCSB BDP "Modify name" 2020-07-17 RCSB BDP "Modify synonyms" 2020-07-17 RCSB BDP "Modify atom id" 2020-07-17 RCSB BDP "Modify component atom id" 2020-07-17 RCSB BDP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id BDP _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C6 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #