data_BDQ # _chem_comp.id BDQ _chem_comp.name "1-(4-cyanophenyl)-3-(4-{[(2Z,4R)-2-imino-4-methyl-4-(2-methylpropyl)-5-oxoimidazolidin-1-yl]methyl}benzyl)urea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-01-11 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 432.518 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BDQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3L5C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BDQ C1 C1 C 0 1 N N R 21.488 12.340 25.146 -6.452 -0.405 -0.363 C1 BDQ 1 BDQ N1 N1 N 0 1 N N N 22.097 11.064 25.492 -6.377 -0.032 1.059 N1 BDQ 2 BDQ O1 O1 O 0 1 N N N 20.370 12.933 23.046 -5.115 0.464 -2.211 O1 BDQ 3 BDQ C2 C2 C 0 1 N N N 21.930 10.252 24.427 -5.393 0.919 1.164 C2 BDQ 4 BDQ N2 N2 N 0 1 N N N 21.280 10.831 23.392 -4.831 1.190 -0.060 N2 BDQ 5 BDQ O2 O2 O 0 1 N N N 25.699 13.926 19.770 3.987 -1.068 0.371 O2 BDQ 6 BDQ C3 C3 C 0 1 N N N 20.965 12.097 23.730 -5.396 0.449 -1.032 C3 BDQ 7 BDQ N3 N3 N 0 1 N N N 22.364 8.996 24.383 -5.039 1.490 2.278 N3 BDQ 8 BDQ C4 C4 C 0 1 N N N 22.540 13.460 25.055 -7.837 -0.083 -0.928 C4 BDQ 9 BDQ N4 N4 N 0 1 N N N 25.119 13.041 17.763 2.434 0.485 0.042 N4 BDQ 10 BDQ C5 C5 C 0 1 N N N 20.332 12.659 26.083 -6.131 -1.890 -0.544 C5 BDQ 11 BDQ N5 N5 N 0 1 N N N 25.198 15.291 18.021 4.711 0.982 -0.083 N5 BDQ 12 BDQ C6 C6 C 0 1 N N N 19.598 11.392 26.525 -4.692 -2.159 -0.102 C6 BDQ 13 BDQ N6 N6 N 0 1 N N N 26.201 21.063 21.496 11.129 -1.061 -0.078 N6 BDQ 14 BDQ C7 C7 C 0 1 N N N 18.106 11.486 26.215 -4.580 -1.972 1.413 C7 BDQ 15 BDQ C8 C8 C 0 1 N N N 19.880 11.075 27.992 -4.305 -3.593 -0.468 C8 BDQ 16 BDQ C9 C9 C 0 1 N N N 21.024 10.215 22.089 -3.754 2.159 -0.279 C9 BDQ 17 BDQ C10 C10 C 0 1 Y N N 22.111 10.590 21.106 -2.421 1.470 -0.138 C10 BDQ 18 BDQ C11 C11 C 0 1 Y N N 23.285 9.788 20.997 -1.818 0.899 -1.243 C11 BDQ 19 BDQ C12 C12 C 0 1 Y N N 24.309 10.147 20.074 -0.595 0.267 -1.113 C12 BDQ 20 BDQ C13 C13 C 0 1 Y N N 24.165 11.304 19.257 0.024 0.206 0.121 C13 BDQ 21 BDQ C14 C14 C 0 1 Y N N 22.989 12.105 19.368 -0.579 0.779 1.225 C14 BDQ 22 BDQ C15 C15 C 0 1 Y N N 21.965 11.748 20.292 -1.799 1.414 1.095 C15 BDQ 23 BDQ C16 C16 C 0 1 N N N 25.263 11.677 18.275 1.357 -0.484 0.262 C16 BDQ 24 BDQ C17 C17 C 0 1 Y N N 25.400 16.444 18.715 6.041 0.558 -0.082 C17 BDQ 25 BDQ C18 C18 C 0 1 Y N N 24.583 16.755 19.842 6.947 1.114 -0.979 C18 BDQ 26 BDQ C19 C19 C 0 1 Y N N 26.430 17.347 18.312 6.458 -0.414 0.820 C19 BDQ 27 BDQ C20 C20 C 0 1 Y N N 24.793 17.963 20.569 8.259 0.699 -0.981 C20 BDQ 28 BDQ C21 C21 C 0 1 Y N N 26.641 18.557 19.041 7.770 -0.834 0.824 C21 BDQ 29 BDQ C22 C22 C 0 1 N N N 25.361 14.078 18.593 3.720 0.091 0.119 C22 BDQ 30 BDQ C23 C23 C 0 1 Y N N 25.823 18.865 20.168 8.682 -0.282 -0.080 C23 BDQ 31 BDQ C24 C24 C 0 1 N N N 26.034 20.082 20.901 10.046 -0.716 -0.079 C24 BDQ 32 BDQ HN1 HN1 H 0 1 N N N 22.551 10.834 26.353 -6.918 -0.389 1.781 HN1 BDQ 33 BDQ HN3 HN3 H 0 1 N N N 22.151 8.556 23.511 -4.333 2.157 2.279 HN3 BDQ 34 BDQ H4 H4 H 0 1 N N N 22.046 14.407 24.793 -8.041 0.981 -0.805 H4 BDQ 35 BDQ H4A H4A H 0 1 N N N 23.046 13.567 26.026 -7.865 -0.338 -1.988 H4A BDQ 36 BDQ H4B H4B H 0 1 N N N 23.280 13.206 24.282 -8.590 -0.662 -0.395 H4B BDQ 37 BDQ HN4 HN4 H 0 1 N N N 24.846 13.202 16.815 2.221 1.410 -0.159 HN4 BDQ 38 BDQ H5 H5 H 0 1 N N N 20.729 13.167 26.974 -6.815 -2.486 0.061 H5 BDQ 39 BDQ H5A H5A H 0 1 N N N 19.622 13.314 25.558 -6.245 -2.161 -1.594 H5A BDQ 40 BDQ HN5 HN5 H 0 1 N N N 24.921 15.343 17.061 4.500 1.917 -0.230 HN5 BDQ 41 BDQ H6 H6 H 0 1 N N N 19.987 10.544 25.942 -4.021 -1.462 -0.604 H6 BDQ 42 BDQ H7 H7 H 0 1 N N N 17.604 10.564 26.543 -3.608 -2.328 1.752 H7 BDQ 43 BDQ H7A H7A H 0 1 N N N 17.675 12.347 26.747 -4.686 -0.914 1.657 H7A BDQ 44 BDQ H7B H7B H 0 1 N N N 17.964 11.616 25.132 -5.369 -2.539 1.908 H7B BDQ 45 BDQ H8 H8 H 0 1 N N N 19.340 10.161 28.281 -4.384 -3.726 -1.547 H8 BDQ 46 BDQ H8A H8A H 0 1 N N N 20.960 10.922 28.133 -3.279 -3.784 -0.153 H8A BDQ 47 BDQ H8B H8B H 0 1 N N N 19.543 11.913 28.619 -4.975 -4.290 0.034 H8B BDQ 48 BDQ H9 H9 H 0 1 N N N 21.003 9.121 22.204 -3.842 2.579 -1.281 H9 BDQ 49 BDQ H9A H9A H 0 1 N N N 20.054 10.567 21.707 -3.830 2.959 0.458 H9A BDQ 50 BDQ H11 H11 H 0 1 N N N 23.398 8.909 21.614 -2.302 0.946 -2.207 H11 BDQ 51 BDQ H12 H12 H 0 1 N N N 25.198 9.539 19.994 -0.125 -0.180 -1.976 H12 BDQ 52 BDQ H14 H14 H 0 1 N N N 22.875 12.984 18.750 -0.095 0.731 2.190 H14 BDQ 53 BDQ H15 H15 H 0 1 N N N 21.077 12.357 20.375 -2.268 1.865 1.957 H15 BDQ 54 BDQ H16 H16 H 0 1 N N N 25.222 10.980 17.425 1.431 -1.284 -0.474 H16 BDQ 55 BDQ H16A H16A H 0 0 N N N 26.232 11.599 18.790 1.444 -0.903 1.265 H16A BDQ 56 BDQ H18 H18 H 0 1 N N N 23.803 16.073 20.146 6.620 1.872 -1.676 H18 BDQ 57 BDQ H19 H19 H 0 1 N N N 27.048 17.115 17.457 5.753 -0.840 1.519 H19 BDQ 58 BDQ H20 H20 H 0 1 N N N 24.173 18.195 21.422 8.962 1.131 -1.678 H20 BDQ 59 BDQ H21 H21 H 0 1 N N N 27.421 19.240 18.738 8.093 -1.589 1.526 H21 BDQ 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BDQ C1 N1 SING N N 1 BDQ C1 C3 SING N N 2 BDQ C1 C4 SING N N 3 BDQ C1 C5 SING N N 4 BDQ N1 C2 SING N N 5 BDQ O1 C3 DOUB N N 6 BDQ C2 N2 SING N N 7 BDQ C2 N3 DOUB N N 8 BDQ N2 C3 SING N N 9 BDQ N2 C9 SING N N 10 BDQ O2 C22 DOUB N N 11 BDQ N4 C16 SING N N 12 BDQ N4 C22 SING N N 13 BDQ C5 C6 SING N N 14 BDQ N5 C17 SING N N 15 BDQ N5 C22 SING N N 16 BDQ C6 C7 SING N N 17 BDQ C6 C8 SING N N 18 BDQ N6 C24 TRIP N N 19 BDQ C9 C10 SING N N 20 BDQ C10 C11 DOUB Y N 21 BDQ C10 C15 SING Y N 22 BDQ C11 C12 SING Y N 23 BDQ C12 C13 DOUB Y N 24 BDQ C13 C14 SING Y N 25 BDQ C13 C16 SING N N 26 BDQ C14 C15 DOUB Y N 27 BDQ C17 C18 DOUB Y N 28 BDQ C17 C19 SING Y N 29 BDQ C18 C20 SING Y N 30 BDQ C19 C21 DOUB Y N 31 BDQ C20 C23 DOUB Y N 32 BDQ C21 C23 SING Y N 33 BDQ C23 C24 SING N N 34 BDQ N1 HN1 SING N N 35 BDQ N3 HN3 SING N N 36 BDQ C4 H4 SING N N 37 BDQ C4 H4A SING N N 38 BDQ C4 H4B SING N N 39 BDQ N4 HN4 SING N N 40 BDQ C5 H5 SING N N 41 BDQ C5 H5A SING N N 42 BDQ N5 HN5 SING N N 43 BDQ C6 H6 SING N N 44 BDQ C7 H7 SING N N 45 BDQ C7 H7A SING N N 46 BDQ C7 H7B SING N N 47 BDQ C8 H8 SING N N 48 BDQ C8 H8A SING N N 49 BDQ C8 H8B SING N N 50 BDQ C9 H9 SING N N 51 BDQ C9 H9A SING N N 52 BDQ C11 H11 SING N N 53 BDQ C12 H12 SING N N 54 BDQ C14 H14 SING N N 55 BDQ C15 H15 SING N N 56 BDQ C16 H16 SING N N 57 BDQ C16 H16A SING N N 58 BDQ C18 H18 SING N N 59 BDQ C19 H19 SING N N 60 BDQ C20 H20 SING N N 61 BDQ C21 H21 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BDQ SMILES_CANONICAL CACTVS 3.352 "CC(C)C[C@@]1(C)NC(=N)N(Cc2ccc(CNC(=O)Nc3ccc(cc3)C#N)cc2)C1=O" BDQ SMILES CACTVS 3.352 "CC(C)C[C]1(C)NC(=N)N(Cc2ccc(CNC(=O)Nc3ccc(cc3)C#N)cc2)C1=O" BDQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C\1/N[C@](C(=O)N1Cc2ccc(cc2)CNC(=O)Nc3ccc(cc3)C#N)(C)CC(C)C" BDQ SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)CC1(C(=O)N(C(=N)N1)Cc2ccc(cc2)CNC(=O)Nc3ccc(cc3)C#N)C" BDQ InChI InChI 1.03 "InChI=1S/C24H28N6O2/c1-16(2)12-24(3)21(31)30(22(26)29-24)15-19-6-4-18(5-7-19)14-27-23(32)28-20-10-8-17(13-25)9-11-20/h4-11,16H,12,14-15H2,1-3H3,(H2,26,29)(H2,27,28,32)/t24-/m1/s1" BDQ InChIKey InChI 1.03 CTKHUQYUPSHMQE-XMMPIXPASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "1-(4-cyanophenyl)-3-[[4-[[(4R)-2-imino-4-methyl-4-(2-methylpropyl)-5-oxo-imidazolidin-1-yl]methyl]phenyl]methyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BDQ "Create component" 2010-01-11 RCSB BDQ "Modify aromatic_flag" 2011-06-04 RCSB BDQ "Modify descriptor" 2011-06-04 RCSB #