data_BE5 # _chem_comp.id BE5 _chem_comp.name ;(2R,3R,4R,5R)-2,5-BIS[(2,3-DIFLUOROBENZYL)OXY]-3,4-DIHYDROXY-N,N'-BIS[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]HEXAN EDIAMIDE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H36 F4 N2 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "HIV-1 INHIBITOR" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-08-10 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 724.695 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BE5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1W5X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BE5 C01 C01 C 0 1 Y N N 16.567 21.959 8.756 3.793 1.499 -1.953 C01 BE5 1 BE5 C02 C02 C 0 1 Y N N 18.013 21.787 8.523 3.096 2.689 -1.853 C02 BE5 2 BE5 C03 C03 C 0 1 Y N N 18.711 20.561 8.861 3.482 3.783 -2.604 C03 BE5 3 BE5 C04 C04 C 0 1 Y N N 17.983 19.429 9.455 4.567 3.691 -3.456 C04 BE5 4 BE5 C05 C05 C 0 1 Y N N 16.530 19.562 9.702 5.267 2.502 -3.558 C05 BE5 5 BE5 C06 C06 C 0 1 Y N N 15.843 20.800 9.359 4.883 1.405 -2.800 C06 BE5 6 BE5 C07 C07 C 0 1 Y N N 9.811 23.856 2.186 -3.803 1.491 1.944 C07 BE5 7 BE5 C08 C08 C 0 1 Y N N 8.770 22.928 2.668 -4.892 1.397 2.792 C08 BE5 8 BE5 C09 C09 C 0 1 Y N N 7.342 23.366 2.704 -5.283 2.497 3.541 C09 BE5 9 BE5 C10 C10 C 0 1 Y N N 6.981 24.748 2.245 -4.589 3.689 3.431 C10 BE5 10 BE5 C11 C11 C 0 1 Y N N 8.069 25.653 1.764 -3.505 3.782 2.578 C11 BE5 11 BE5 C12 C12 C 0 1 Y N N 9.435 25.199 1.746 -3.112 2.684 1.835 C12 BE5 12 BE5 C13 C13 C 0 1 N N N 11.290 23.491 2.127 -3.373 0.296 1.133 C13 BE5 13 BE5 O14 O14 O 0 1 N N N 11.760 23.061 3.446 -2.238 0.643 0.337 O14 BE5 14 BE5 C15 C15 C 0 1 N N R 11.936 24.080 4.576 -1.880 -0.525 -0.403 C15 BE5 15 BE5 C16 C16 C 0 1 N N R 12.997 23.686 5.566 -0.373 -0.521 -0.664 C16 BE5 16 BE5 C17 C17 C 0 1 N N R 14.282 23.465 4.915 0.375 -0.514 0.669 C17 BE5 17 BE5 C18 C18 C 0 1 N N R 15.229 22.727 5.959 1.883 -0.511 0.408 C18 BE5 18 BE5 C19 C19 C 0 1 N N N 15.186 21.217 5.792 2.620 -0.504 1.723 C19 BE5 19 BE5 O20 O20 O 0 1 N N N 14.128 20.572 6.003 3.372 0.408 1.991 O20 BE5 20 BE5 N21 N21 N 0 1 N N N 16.340 20.585 5.428 2.444 -1.512 2.600 N21 BE5 21 BE5 O22 O22 O 0 1 N N N 14.886 23.062 7.373 2.234 0.653 -0.340 O22 BE5 22 BE5 C23 C23 C 0 1 N N N 15.946 23.304 8.351 3.370 0.307 -1.134 C23 BE5 23 BE5 O24 O24 O 0 1 N N N 14.843 24.745 4.519 0.024 -1.679 1.419 O24 BE5 24 BE5 O25 O25 O 0 1 N N N 13.137 24.798 6.543 -0.015 -1.690 -1.405 O25 BE5 25 BE5 C26 C26 C 0 1 N N N 10.697 24.217 5.367 -2.618 -0.532 -1.717 C26 BE5 26 BE5 O27 O27 O 0 1 N N N 10.267 23.236 6.026 -3.375 0.374 -1.992 O27 BE5 27 BE5 N28 N28 N 0 1 N N N 10.049 25.410 5.370 -2.435 -1.545 -2.587 N28 BE5 28 BE5 C29 C29 C 0 1 N N S 8.831 25.605 6.129 -3.152 -1.552 -3.864 C29 BE5 29 BE5 C30 C30 C 0 1 Y N N 9.143 26.303 7.414 -2.321 -0.873 -4.939 C30 BE5 30 BE5 C31 C31 C 0 1 Y N N 8.009 27.145 7.803 -2.367 -1.613 -6.105 C31 BE5 31 BE5 C32 C32 C 0 1 Y N N 10.361 26.247 8.258 -1.585 0.299 -4.896 C32 BE5 32 BE5 C33 C33 C 0 1 Y N N 10.414 27.064 9.512 -0.898 0.730 -6.013 C33 BE5 33 BE5 C34 C34 C 0 1 Y N N 9.256 27.900 9.874 -0.944 -0.010 -7.180 C34 BE5 34 BE5 C35 C35 C 0 1 N N R 7.766 26.571 5.544 -3.346 -2.998 -4.367 C35 BE5 35 BE5 O36 O36 O 0 1 N N N 8.483 27.646 4.889 -2.317 -3.853 -3.865 O36 BE5 36 BE5 C37 C37 C 0 1 Y N N 8.044 27.954 9.034 -1.677 -1.180 -7.225 C37 BE5 37 BE5 C38 C38 C 0 1 N N N 6.940 27.011 6.789 -3.229 -2.840 -5.898 C38 BE5 38 BE5 C39 C39 C 0 1 N N S 16.442 19.156 5.250 3.161 -1.505 3.877 C39 BE5 39 BE5 C40 C40 C 0 1 Y N N 16.360 18.758 3.782 2.315 -0.854 4.951 C40 BE5 40 BE5 C41 C41 C 0 1 Y N N 17.305 17.688 3.510 2.379 -1.603 6.112 C41 BE5 41 BE5 C42 C42 C 0 1 Y N N 15.512 19.292 2.705 1.547 0.295 4.915 C42 BE5 42 BE5 C43 C43 C 0 1 Y N N 15.636 18.719 1.330 0.848 0.700 6.035 C43 BE5 43 BE5 C44 C44 C 0 1 Y N N 16.601 17.640 1.096 0.914 -0.046 7.197 C44 BE5 44 BE5 C45 C45 C 0 1 N N R 17.846 18.620 5.638 3.397 -2.950 4.366 C45 BE5 45 BE5 O46 O46 O 0 1 N N N 18.812 19.662 5.343 2.394 -3.830 3.854 O46 BE5 46 BE5 C47 C47 C 0 1 Y N N 17.449 17.103 2.162 1.678 -1.195 7.235 C47 BE5 47 BE5 C48 C48 C 0 1 N N N 18.023 17.353 4.783 3.275 -2.805 5.898 C48 BE5 48 BE5 F49 F49 F 0 1 N N N 6.315 22.450 3.184 -6.343 2.405 4.374 F49 BE5 49 BE5 F50 F50 F 0 1 N N N 15.778 18.448 10.291 6.328 2.411 -4.390 F50 BE5 50 BE5 F51 F51 F 0 1 N N N 14.351 20.974 9.593 5.565 0.243 -2.898 F51 BE5 51 BE5 F52 F52 F 0 1 N N N 9.143 21.560 3.121 -5.567 0.232 2.898 F52 BE5 52 BE5 H02 H02 H 0 1 N N N 18.583 22.619 8.076 2.248 2.763 -1.188 H02 BE5 53 BE5 H03 H03 H 0 1 N N N 19.794 20.477 8.671 2.936 4.711 -2.525 H03 BE5 54 BE5 H04 H04 H 0 1 N N N 18.512 18.496 9.712 4.867 4.546 -4.042 H04 BE5 55 BE5 H10 H10 H 0 1 N N N 5.932 25.090 2.262 -4.895 4.547 4.011 H10 BE5 56 BE5 H11 H11 H 0 1 N N N 7.824 26.673 1.421 -2.964 4.712 2.492 H11 BE5 57 BE5 H12 H12 H 0 1 N N N 10.222 25.885 1.390 -2.265 2.758 1.170 H12 BE5 58 BE5 H131 1H13 H 0 0 N N N 11.908 24.323 1.716 -4.191 -0.016 0.484 H131 BE5 59 BE5 H132 2H13 H 0 0 N N N 11.499 22.728 1.342 -3.109 -0.521 1.804 H132 BE5 60 BE5 H15 H15 H 0 1 N N N 12.198 25.070 4.136 -2.148 -1.413 0.168 H15 BE5 61 BE5 H16 H16 H 0 1 N N N 12.684 22.758 6.099 -0.105 0.366 -1.236 H16 BE5 62 BE5 H17 H17 H 0 1 N N N 14.142 22.822 4.015 0.102 0.376 1.234 H17 BE5 63 BE5 H18 H18 H 0 1 N N N 16.275 23.063 5.771 2.156 -1.402 -0.156 H18 BE5 64 BE5 H21 H21 H 0 1 N N N 17.174 21.152 5.274 1.842 -2.242 2.385 H21 BE5 65 BE5 H231 1H23 H 0 0 N N N 16.708 24.030 7.982 4.190 0.005 -0.482 H231 BE5 66 BE5 H232 2H23 H 0 0 N N N 15.588 23.889 9.230 3.112 -0.516 -1.799 H232 BE5 67 BE5 H24 H24 H 0 1 N N N 15.681 24.601 4.095 0.282 -2.443 0.885 H24 BE5 68 BE5 H25 H25 H 0 1 N N N 13.807 24.549 7.168 -0.268 -2.451 -0.865 H25 BE5 69 BE5 H28 H28 H 0 1 N N N 10.428 26.185 4.826 -1.830 -2.270 -2.367 H28 BE5 70 BE5 H29 H29 H 0 1 N N N 8.362 24.617 6.344 -4.116 -1.053 -3.760 H29 BE5 71 BE5 H32 H32 H 0 1 N N N 11.215 25.613 7.966 -1.549 0.878 -3.985 H32 BE5 72 BE5 H33 H33 H 0 1 N N N 11.309 27.040 10.156 -0.325 1.644 -5.976 H33 BE5 73 BE5 H34 H34 H 0 1 N N N 9.296 28.502 10.798 -0.407 0.324 -8.055 H34 BE5 74 BE5 H35 H35 H 0 1 N N N 7.115 26.036 4.814 -4.331 -3.376 -4.091 H35 BE5 75 BE5 H36 H36 H 0 1 N N N 7.831 28.237 4.531 -2.469 -4.728 -4.248 H36 BE5 76 BE5 H37 H37 H 0 1 N N N 7.186 28.584 9.321 -1.712 -1.758 -8.136 H37 BE5 77 BE5 H381 1H38 H 0 0 N N N 6.097 26.337 7.068 -2.750 -3.717 -6.334 H381 BE5 78 BE5 H382 2H38 H 0 0 N N N 6.300 27.913 6.645 -4.215 -2.688 -6.339 H382 BE5 79 BE5 H39 H39 H 0 1 N N N 15.651 18.634 5.838 4.111 -0.981 3.774 H39 BE5 80 BE5 H42 H42 H 0 1 N N N 14.794 20.104 2.909 1.495 0.879 4.008 H42 BE5 81 BE5 H43 H43 H 0 1 N N N 15.012 19.101 0.505 0.251 1.599 6.004 H43 BE5 82 BE5 H44 H44 H 0 1 N N N 16.691 17.218 0.081 0.368 0.268 8.074 H44 BE5 83 BE5 H45 H45 H 0 1 N N N 17.875 18.362 6.722 4.392 -3.295 4.088 H45 BE5 84 BE5 H46 H46 H 0 1 N N N 19.671 19.334 5.581 2.596 -4.712 4.194 H46 BE5 85 BE5 H47 H47 H 0 1 N N N 18.169 16.291 1.965 1.729 -1.778 8.143 H47 BE5 86 BE5 H481 1H48 H 0 0 N N N 17.680 16.413 5.274 2.819 -3.697 6.328 H481 BE5 87 BE5 H482 2H48 H 0 0 N N N 19.082 17.032 4.646 4.255 -2.629 6.341 H482 BE5 88 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BE5 C01 C02 DOUB Y N 1 BE5 C01 C06 SING Y N 2 BE5 C01 C23 SING N N 3 BE5 C02 C03 SING Y N 4 BE5 C02 H02 SING N N 5 BE5 C03 C04 DOUB Y N 6 BE5 C03 H03 SING N N 7 BE5 C04 C05 SING Y N 8 BE5 C04 H04 SING N N 9 BE5 C05 C06 DOUB Y N 10 BE5 C05 F50 SING N N 11 BE5 C06 F51 SING N N 12 BE5 C07 C08 DOUB Y N 13 BE5 C07 C12 SING Y N 14 BE5 C07 C13 SING N N 15 BE5 C08 C09 SING Y N 16 BE5 C08 F52 SING N N 17 BE5 C09 C10 DOUB Y N 18 BE5 C09 F49 SING N N 19 BE5 C10 C11 SING Y N 20 BE5 C10 H10 SING N N 21 BE5 C11 C12 DOUB Y N 22 BE5 C11 H11 SING N N 23 BE5 C12 H12 SING N N 24 BE5 C13 O14 SING N N 25 BE5 C13 H131 SING N N 26 BE5 C13 H132 SING N N 27 BE5 O14 C15 SING N N 28 BE5 C15 C16 SING N N 29 BE5 C15 C26 SING N N 30 BE5 C15 H15 SING N N 31 BE5 C16 C17 SING N N 32 BE5 C16 O25 SING N N 33 BE5 C16 H16 SING N N 34 BE5 C17 C18 SING N N 35 BE5 C17 O24 SING N N 36 BE5 C17 H17 SING N N 37 BE5 C18 C19 SING N N 38 BE5 C18 O22 SING N N 39 BE5 C18 H18 SING N N 40 BE5 C19 O20 DOUB N N 41 BE5 C19 N21 SING N N 42 BE5 N21 C39 SING N N 43 BE5 N21 H21 SING N N 44 BE5 O22 C23 SING N N 45 BE5 C23 H231 SING N N 46 BE5 C23 H232 SING N N 47 BE5 O24 H24 SING N N 48 BE5 O25 H25 SING N N 49 BE5 C26 O27 DOUB N N 50 BE5 C26 N28 SING N N 51 BE5 N28 C29 SING N N 52 BE5 N28 H28 SING N N 53 BE5 C29 C30 SING N N 54 BE5 C29 C35 SING N N 55 BE5 C29 H29 SING N N 56 BE5 C30 C31 DOUB Y N 57 BE5 C30 C32 SING Y N 58 BE5 C31 C37 SING Y N 59 BE5 C31 C38 SING N N 60 BE5 C32 C33 DOUB Y N 61 BE5 C32 H32 SING N N 62 BE5 C33 C34 SING Y N 63 BE5 C33 H33 SING N N 64 BE5 C34 C37 DOUB Y N 65 BE5 C34 H34 SING N N 66 BE5 C35 O36 SING N N 67 BE5 C35 C38 SING N N 68 BE5 C35 H35 SING N N 69 BE5 O36 H36 SING N N 70 BE5 C37 H37 SING N N 71 BE5 C38 H381 SING N N 72 BE5 C38 H382 SING N N 73 BE5 C39 C40 SING N N 74 BE5 C39 C45 SING N N 75 BE5 C39 H39 SING N N 76 BE5 C40 C41 DOUB Y N 77 BE5 C40 C42 SING Y N 78 BE5 C41 C47 SING Y N 79 BE5 C41 C48 SING N N 80 BE5 C42 C43 DOUB Y N 81 BE5 C42 H42 SING N N 82 BE5 C43 C44 SING Y N 83 BE5 C43 H43 SING N N 84 BE5 C44 C47 DOUB Y N 85 BE5 C44 H44 SING N N 86 BE5 C45 O46 SING N N 87 BE5 C45 C48 SING N N 88 BE5 C45 H45 SING N N 89 BE5 O46 H46 SING N N 90 BE5 C47 H47 SING N N 91 BE5 C48 H481 SING N N 92 BE5 C48 H482 SING N N 93 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BE5 SMILES ACDLabs 10.04 "Fc1cccc(c1F)COC(C(=O)NC3c2ccccc2CC3O)C(O)C(O)C(OCc4cccc(F)c4F)C(=O)NC6c5ccccc5CC6O" BE5 SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1Cc2ccccc2[C@@H]1NC(=O)[C@H](OCc3cccc(F)c3F)[C@H](O)[C@@H](O)[C@@H](OCc4cccc(F)c4F)C(=O)N[C@@H]5[C@H](O)Cc6ccccc56" BE5 SMILES CACTVS 3.341 "O[CH]1Cc2ccccc2[CH]1NC(=O)[CH](OCc3cccc(F)c3F)[CH](O)[CH](O)[CH](OCc4cccc(F)c4F)C(=O)N[CH]5[CH](O)Cc6ccccc56" BE5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)C[C@H]([C@H]2NC(=O)[C@@H]([C@@H]([C@H]([C@H](C(=O)N[C@H]3c4ccccc4C[C@H]3O)OCc5cccc(c5F)F)O)O)OCc6cccc(c6F)F)O" BE5 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)CC(C2NC(=O)C(C(C(C(C(=O)NC3c4ccccc4CC3O)OCc5cccc(c5F)F)O)O)OCc6cccc(c6F)F)O" BE5 InChI InChI 1.03 "InChI=1S/C38H36F4N2O8/c39-25-13-5-9-21(29(25)41)17-51-35(37(49)43-31-23-11-3-1-7-19(23)15-27(31)45)33(47)34(48)36(52-18-22-10-6-14-26(40)30(22)42)38(50)44-32-24-12-4-2-8-20(24)16-28(32)46/h1-14,27-28,31-36,45-48H,15-18H2,(H,43,49)(H,44,50)/t27-,28-,31+,32+,33-,34-,35-,36-/m1/s1" BE5 InChIKey InChI 1.03 FJIRQAXCBOCEQN-QHNIKEGDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BE5 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,4R,5R)-2,5-bis[(2,3-difluorobenzyl)oxy]-3,4-dihydroxy-N,N'-bis[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]hexanediamide (non-preferred name)" BE5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R)-2,5-bis[(2,3-difluorophenyl)methoxy]-3,4-dihydroxy-N,N'-bis[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]hexanediamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BE5 "Create component" 2004-08-10 EBI BE5 "Modify descriptor" 2011-06-04 RCSB BE5 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BE5 _pdbx_chem_comp_synonyms.name "HIV-1 INHIBITOR" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##