data_BED # _chem_comp.id BED _chem_comp.name "N,N-[2,5-O-DI-2-FLUORO-BENZYL-GLUCARYL]-DI-[1-AMINO-INDAN-2-OL]" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H38 F2 N2 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "INHIBITOR BEA403" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-01-31 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 688.714 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BED _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EC0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BED C01 C01 C 0 1 Y N N 16.560 22.074 8.736 -4.169 -1.626 -0.903 C01 BED 1 BED C02 C02 C 0 1 Y N N 17.971 21.882 8.481 -3.470 -2.815 -0.988 C02 BED 2 BED C03 C03 C 0 1 Y N N 18.660 20.712 8.898 -4.039 -3.909 -1.612 C03 BED 3 BED C04 C04 C 0 1 Y N N 17.951 19.669 9.599 -5.308 -3.815 -2.153 C04 BED 4 BED C05 C05 C 0 1 Y N N 16.551 19.816 9.872 -6.009 -2.627 -2.071 C05 BED 5 BED C06 C06 C 0 1 Y N N 15.865 21.010 9.443 -5.442 -1.532 -1.440 C06 BED 6 BED C07 C07 C 0 1 Y N N 9.830 23.868 2.296 4.177 -1.617 0.892 C07 BED 7 BED C08 C08 C 0 1 Y N N 8.811 22.936 2.738 5.449 -1.522 1.429 C08 BED 8 BED C09 C09 C 0 1 Y N N 7.425 23.329 2.733 6.020 -2.620 2.051 C09 BED 9 BED C10 C10 C 0 1 Y N N 7.050 24.644 2.288 5.324 -3.812 2.124 C10 BED 10 BED C11 C11 C 0 1 Y N N 8.062 25.571 1.848 4.056 -3.906 1.582 C11 BED 11 BED C12 C12 C 0 1 Y N N 9.434 25.185 1.855 3.482 -2.809 0.966 C12 BED 12 BED C13 C13 C 0 1 N N N 11.311 23.487 2.303 3.552 -0.421 0.220 C13 BED 13 BED O14 O14 O 0 1 N N N 11.793 23.112 3.608 2.249 -0.769 -0.254 O14 BED 14 BED C15 C15 C 0 1 N N R 11.895 24.225 4.551 1.712 0.399 -0.877 C15 BED 15 BED C16 C16 C 0 1 N N R 12.955 23.976 5.586 0.188 0.395 -0.739 C16 BED 16 BED C17 C17 C 0 1 N N R 14.257 23.622 4.980 -0.188 0.388 0.743 C17 BED 17 BED C18 C18 C 0 1 N N R 15.132 22.849 6.000 -1.712 0.385 0.882 C18 BED 18 BED C19 C19 C 0 1 N N N 15.141 21.347 5.831 -2.084 0.378 2.342 C19 BED 19 BED O20 O20 O 0 1 N N N 14.131 20.655 6.000 -2.741 -0.534 2.797 O20 BED 20 BED N21 N21 N 0 1 N N N 16.359 20.790 5.495 -1.686 1.387 3.143 N21 BED 21 BED O22 O22 O 0 1 N N N 14.777 23.125 7.384 -2.245 -0.779 0.249 O22 BED 22 BED C23 C23 C 0 1 N N N 15.890 23.353 8.252 -3.549 -0.433 -0.222 C23 BED 23 BED O24 O24 O 0 1 N N N 14.813 24.877 4.561 0.344 1.554 1.376 O24 BED 24 BED O25 O25 O 0 1 N N N 13.117 25.102 6.493 -0.349 1.563 -1.362 O25 BED 25 BED C26 C26 C 0 1 N N N 10.680 24.321 5.386 2.083 0.405 -2.337 C26 BED 26 BED O27 O27 O 0 1 N N N 10.295 23.331 6.010 2.744 -0.500 -2.799 O27 BED 27 BED N28 N28 N 0 1 N N N 10.042 25.514 5.409 1.682 1.419 -3.130 N28 BED 28 BED C29 C29 C 0 1 N N S 8.853 25.718 6.184 2.043 1.425 -4.550 C29 BED 29 BED C30 C30 C 0 1 Y N N 9.142 26.445 7.468 0.962 0.746 -5.372 C30 BED 30 BED C31 C31 C 0 1 Y N N 8.041 27.285 7.816 0.704 1.486 -6.511 C31 BED 31 BED C32 C32 C 0 1 Y N N 10.315 26.396 8.319 0.263 -0.426 -5.140 C32 BED 32 BED C33 C33 C 0 1 Y N N 10.354 27.203 9.515 -0.690 -0.857 -6.041 C33 BED 33 BED C34 C34 C 0 1 Y N N 9.227 28.044 9.848 -0.948 -0.117 -7.180 C34 BED 34 BED C35 C35 C 0 1 N N R 7.763 26.609 5.570 2.100 2.871 -5.087 C35 BED 35 BED O36 O36 O 0 1 N N N 8.414 27.665 4.869 1.237 3.726 -4.335 O36 BED 36 BED C37 C37 C 0 1 Y N N 8.059 28.092 8.999 -0.251 1.052 -7.413 C37 BED 37 BED C38 C38 C 0 1 N N N 6.969 27.158 6.782 1.591 2.713 -6.535 C38 BED 38 BED C39 C39 C 0 1 N N S 16.603 19.370 5.296 -2.048 1.380 4.563 C39 BED 39 BED C40 C40 C 0 1 Y N N 16.508 18.938 3.854 -0.953 0.730 5.381 C40 BED 40 BED C41 C41 C 0 1 Y N N 17.432 17.886 3.583 -0.714 1.479 6.519 C41 BED 41 BED C42 C42 C 0 1 Y N N 15.655 19.435 2.807 -0.220 -0.420 5.148 C42 BED 42 BED C43 C43 C 0 1 Y N N 15.755 18.848 1.488 0.744 -0.825 6.049 C43 BED 43 BED C44 C44 C 0 1 Y N N 16.688 17.793 1.235 0.982 -0.078 7.188 C44 BED 44 BED C45 C45 C 0 1 N N R 18.003 18.855 5.663 -2.149 2.825 5.096 C45 BED 45 BED O46 O46 O 0 1 N N N 18.946 19.889 5.335 -1.314 3.705 4.342 O46 BED 46 BED C47 C47 C 0 1 Y N N 17.540 17.296 2.276 0.253 1.071 7.422 C47 BED 47 BED C48 C48 C 0 1 N N N 18.195 17.557 4.822 -1.635 2.680 6.544 C48 BED 48 BED F49 F49 F 0 1 N N N 14.585 21.066 9.727 -6.126 -0.370 -1.358 F49 BED 49 BED F50 F50 F 0 1 N N N 9.131 21.732 3.153 6.129 -0.357 1.357 F50 BED 50 BED H2 H2 H 0 1 N N N 18.544 22.658 7.947 -2.479 -2.890 -0.566 H2 BED 51 BED H3 H3 H 0 1 N N N 19.736 20.614 8.679 -3.492 -4.838 -1.677 H3 BED 52 BED H4 H4 H 0 1 N N N 18.479 18.758 9.926 -5.752 -4.671 -2.641 H4 BED 53 BED H5 H5 H 0 1 N N N 16.007 19.018 10.406 -7.000 -2.554 -2.494 H5 BED 54 BED H9 H9 H 0 1 N N N 6.649 22.621 3.070 7.011 -2.546 2.475 H9 BED 55 BED H10 H10 H 0 1 N N N 5.987 24.941 2.284 5.771 -4.669 2.605 H10 BED 56 BED H11 H11 H 0 1 N N N 7.784 26.581 1.503 3.512 -4.838 1.639 H11 BED 57 BED H12 H12 H 0 1 N N N 10.193 25.909 1.517 2.491 -2.884 0.544 H12 BED 58 BED H131 1H13 H 0 0 N N N 11.518 22.684 1.557 4.173 -0.109 -0.618 H131 BED 59 BED H132 2H13 H 0 0 N N N 11.933 24.304 1.869 3.471 0.396 0.936 H132 BED 60 BED H15 H15 H 0 1 N N N 12.089 25.121 3.917 2.118 1.288 -0.395 H15 BED 61 BED H16 H16 H 0 1 N N N 12.598 23.101 6.179 -0.218 -0.493 -1.221 H16 BED 62 BED H17 H17 H 0 1 N N N 14.176 22.930 4.108 0.221 -0.502 1.218 H17 BED 63 BED H18 H18 H 0 1 N N N 16.151 23.237 5.769 -2.122 1.276 0.406 H18 BED 64 BED H21 H21 H 0 1 N N N 17.118 21.462 5.388 -1.161 2.117 2.780 H21 BED 65 BED H231 1H23 H 0 0 N N N 15.591 23.991 9.115 -4.172 -0.131 0.619 H231 BED 66 BED H232 2H23 H 0 0 N N N 16.634 24.028 7.768 -3.471 0.390 -0.931 H232 BED 67 BED H24 H24 H 0 1 N N N 15.649 24.649 4.171 -0.043 2.317 0.926 H24 BED 68 BED H25 H25 H 0 1 N N N 13.787 24.944 7.147 0.035 2.325 -0.906 H25 BED 69 BED H28 H28 H 0 1 N N N 10.455 26.256 4.844 1.154 2.144 -2.761 H28 BED 70 BED H29 H29 H 0 1 N N N 8.497 24.666 6.282 3.001 0.926 -4.698 H29 BED 71 BED H32 H32 H 0 1 N N N 11.170 25.750 8.058 0.463 -1.005 -4.250 H32 BED 72 BED H33 H33 H 0 1 N N N 11.240 27.177 10.171 -1.234 -1.772 -5.856 H33 BED 73 BED H34 H34 H 0 1 N N N 9.258 28.658 10.763 -1.693 -0.452 -7.885 H34 BED 74 BED H35 H35 H 0 1 N N N 7.088 26.077 4.858 3.123 3.249 -5.075 H35 BED 75 BED H36 H36 H 0 1 N N N 7.739 28.216 4.489 1.284 4.601 -4.744 H36 BED 76 BED H37 H37 H 0 1 N N N 7.196 28.732 9.249 -0.453 1.630 -8.303 H37 BED 77 BED H381 1H38 H 0 0 N N N 6.086 26.547 7.086 1.015 3.589 -6.831 H381 BED 78 BED H382 2H38 H 0 0 N N N 6.387 28.088 6.585 2.428 2.561 -7.216 H382 BED 79 BED H39 H39 H 0 1 N N N 15.814 18.959 5.968 -2.992 0.856 4.710 H39 BED 80 BED H42 H42 H 0 1 N N N 14.939 20.249 3.011 -0.405 -1.004 4.259 H42 BED 81 BED H43 H43 H 0 1 N N N 15.113 19.208 0.666 1.313 -1.724 5.864 H43 BED 82 BED H44 H44 H 0 1 N N N 16.751 17.357 0.223 1.736 -0.392 7.893 H44 BED 83 BED H45 H45 H 0 1 N N N 18.144 18.617 6.743 -3.183 3.171 5.085 H45 BED 84 BED H46 H46 H 0 1 N N N 19.811 19.570 5.562 -1.421 4.587 4.722 H46 BED 85 BED H47 H47 H 0 1 N N N 18.258 16.482 2.077 0.439 1.654 8.312 H47 BED 86 BED H481 1H48 H 0 0 N N N 17.890 16.612 5.330 -1.084 3.573 6.841 H481 BED 87 BED H482 2H48 H 0 0 N N N 19.254 17.248 4.659 -2.467 2.505 7.226 H482 BED 88 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BED C01 C02 DOUB Y N 1 BED C01 C06 SING Y N 2 BED C01 C23 SING N N 3 BED C02 C03 SING Y N 4 BED C02 H2 SING N N 5 BED C03 C04 DOUB Y N 6 BED C03 H3 SING N N 7 BED C04 C05 SING Y N 8 BED C04 H4 SING N N 9 BED C05 C06 DOUB Y N 10 BED C05 H5 SING N N 11 BED C06 F49 SING N N 12 BED C07 C08 DOUB Y N 13 BED C07 C12 SING Y N 14 BED C07 C13 SING N N 15 BED C08 C09 SING Y N 16 BED C08 F50 SING N N 17 BED C09 C10 DOUB Y N 18 BED C09 H9 SING N N 19 BED C10 C11 SING Y N 20 BED C10 H10 SING N N 21 BED C11 C12 DOUB Y N 22 BED C11 H11 SING N N 23 BED C12 H12 SING N N 24 BED C13 O14 SING N N 25 BED C13 H131 SING N N 26 BED C13 H132 SING N N 27 BED O14 C15 SING N N 28 BED C15 C16 SING N N 29 BED C15 C26 SING N N 30 BED C15 H15 SING N N 31 BED C16 C17 SING N N 32 BED C16 O25 SING N N 33 BED C16 H16 SING N N 34 BED C17 C18 SING N N 35 BED C17 O24 SING N N 36 BED C17 H17 SING N N 37 BED C18 C19 SING N N 38 BED C18 O22 SING N N 39 BED C18 H18 SING N N 40 BED C19 O20 DOUB N N 41 BED C19 N21 SING N N 42 BED N21 C39 SING N N 43 BED N21 H21 SING N N 44 BED O22 C23 SING N N 45 BED C23 H231 SING N N 46 BED C23 H232 SING N N 47 BED O24 H24 SING N N 48 BED O25 H25 SING N N 49 BED C26 O27 DOUB N N 50 BED C26 N28 SING N N 51 BED N28 C29 SING N N 52 BED N28 H28 SING N N 53 BED C29 C30 SING N N 54 BED C29 C35 SING N N 55 BED C29 H29 SING N N 56 BED C30 C31 DOUB Y N 57 BED C30 C32 SING Y N 58 BED C31 C37 SING Y N 59 BED C31 C38 SING N N 60 BED C32 C33 DOUB Y N 61 BED C32 H32 SING N N 62 BED C33 C34 SING Y N 63 BED C33 H33 SING N N 64 BED C34 C37 DOUB Y N 65 BED C34 H34 SING N N 66 BED C35 O36 SING N N 67 BED C35 C38 SING N N 68 BED C35 H35 SING N N 69 BED O36 H36 SING N N 70 BED C37 H37 SING N N 71 BED C38 H381 SING N N 72 BED C38 H382 SING N N 73 BED C39 C40 SING N N 74 BED C39 C45 SING N N 75 BED C39 H39 SING N N 76 BED C40 C41 DOUB Y N 77 BED C40 C42 SING Y N 78 BED C41 C47 SING Y N 79 BED C41 C48 SING N N 80 BED C42 C43 DOUB Y N 81 BED C42 H42 SING N N 82 BED C43 C44 SING Y N 83 BED C43 H43 SING N N 84 BED C44 C47 DOUB Y N 85 BED C44 H44 SING N N 86 BED C45 O46 SING N N 87 BED C45 C48 SING N N 88 BED C45 H45 SING N N 89 BED O46 H46 SING N N 90 BED C47 H47 SING N N 91 BED C48 H481 SING N N 92 BED C48 H482 SING N N 93 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BED SMILES ACDLabs 10.04 "Fc1ccccc1COC(C(=O)NC3c2ccccc2CC3O)C(O)C(O)C(OCc4ccccc4F)C(=O)NC6c5ccccc5CC6O" BED SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1Cc2ccccc2[C@@H]1NC(=O)[C@H](OCc3ccccc3F)[C@H](O)[C@@H](O)[C@@H](OCc4ccccc4F)C(=O)N[C@@H]5[C@H](O)Cc6ccccc56" BED SMILES CACTVS 3.341 "O[CH]1Cc2ccccc2[CH]1NC(=O)[CH](OCc3ccccc3F)[CH](O)[CH](O)[CH](OCc4ccccc4F)C(=O)N[CH]5[CH](O)Cc6ccccc56" BED SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)C[C@H]([C@H]2NC(=O)[C@@H]([C@@H]([C@H]([C@H](C(=O)N[C@H]3c4ccccc4C[C@H]3O)OCc5ccccc5F)O)O)OCc6ccccc6F)O" BED SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)CC(C2NC(=O)C(C(C(C(C(=O)NC3c4ccccc4CC3O)OCc5ccccc5F)O)O)OCc6ccccc6F)O" BED InChI InChI 1.03 "InChI=1S/C38H38F2N2O8/c39-27-15-7-3-11-23(27)19-49-35(37(47)41-31-25-13-5-1-9-21(25)17-29(31)43)33(45)34(46)36(50-20-24-12-4-8-16-28(24)40)38(48)42-32-26-14-6-2-10-22(26)18-30(32)44/h1-16,29-36,43-46H,17-20H2,(H,41,47)(H,42,48)/t29-,30-,31+,32+,33-,34-,35-,36-/m1/s1" BED InChIKey InChI 1.03 LYHLPPXMBKMSSZ-JQFCFGFHSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BED "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,4R,5R)-2,5-bis[(2-fluorobenzyl)oxy]-3,4-dihydroxy-N,N'-bis[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]hexanediamide (non-preferred name)" BED "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R)-2,5-bis[(2-fluorophenyl)methoxy]-3,4-dihydroxy-N,N'-bis[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]hexanediamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BED "Create component" 2000-01-31 RCSB BED "Modify descriptor" 2011-06-04 RCSB BED "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BED _pdbx_chem_comp_synonyms.name "INHIBITOR BEA403" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##