data_BEE # _chem_comp.id BEE _chem_comp.name "N,N-[2,5-O-[DI-4-THIOPHEN-3-YL-BENZYL]-GLUCARYL]-DI-[VALYL-AMIDO-METHANE]" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H50 N4 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "INHIBITOR BEA409" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-01-31 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 778.977 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BEE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EC1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BEE C1 C1 C 0 1 Y N N 9.699 24.197 2.021 4.205 1.163 -0.444 C1 BEE 1 BEE C2 C2 C 0 1 Y N N 8.875 25.328 1.778 4.574 2.174 -1.312 C2 BEE 2 BEE C3 C3 C 0 1 Y N N 7.487 25.268 2.045 5.417 1.904 -2.372 C3 BEE 3 BEE C4 C4 C 0 1 Y N N 6.924 24.070 2.561 5.896 0.609 -2.565 C4 BEE 4 BEE C5 C5 C 0 1 Y N N 7.745 22.949 2.802 5.521 -0.405 -1.686 C5 BEE 5 BEE C6 C6 C 0 1 Y N N 9.132 23.013 2.531 4.682 -0.123 -0.627 C6 BEE 6 BEE C7 C7 C 0 1 Y N N 16.129 22.256 8.486 -4.184 -1.163 -0.474 C7 BEE 7 BEE C8 C8 C 0 1 Y N N 15.288 21.382 9.256 -4.546 -2.180 -1.339 C8 BEE 8 BEE C9 C9 C 0 1 Y N N 15.830 20.219 9.878 -5.379 -1.916 -2.408 C9 BEE 9 BEE C10 C10 C 0 1 Y N N 17.207 19.941 9.723 -5.857 -0.623 -2.613 C10 BEE 10 BEE C11 C11 C 0 1 Y N N 18.050 20.817 8.950 -5.489 0.397 -1.737 C11 BEE 11 BEE C12 C12 C 0 1 Y N N 17.507 21.976 8.330 -4.660 0.121 -0.669 C12 BEE 12 BEE C13 C13 C 0 1 N N N 15.536 23.468 7.828 -3.274 -1.457 0.691 C13 BEE 13 BEE O14 O14 O 0 1 N N N 14.483 23.079 6.889 -1.914 -1.277 0.289 O14 BEE 14 BEE C15 C15 C 0 1 N N R 14.975 22.631 5.602 -1.104 -1.569 1.430 C15 BEE 15 BEE C16 C16 C 0 1 N N R 13.966 23.037 4.534 0.180 -0.739 1.370 C16 BEE 16 BEE C17 C17 C 0 1 N N R 13.609 24.489 4.621 -0.175 0.749 1.364 C17 BEE 17 BEE C18 C18 C 0 1 N N R 12.244 24.775 3.933 1.108 1.580 1.430 C18 BEE 18 BEE C19 C19 C 0 1 N N N 11.113 24.739 4.947 0.759 3.046 1.424 C19 BEE 19 BEE O20 O20 O 0 1 N N N 10.858 23.670 5.505 1.094 3.745 0.492 O20 BEE 20 BEE N21 N21 N 0 1 N N N 10.445 25.870 5.186 0.074 3.579 2.455 N21 BEE 21 BEE C22 C22 C 0 1 N N S 9.313 26.008 6.147 -0.266 5.005 2.449 C22 BEE 22 BEE C23 C23 C 0 1 N N N 9.795 26.662 7.507 -1.564 5.216 1.668 C23 BEE 23 BEE C24 C24 C 0 1 N N N 8.622 26.845 8.539 -1.378 4.730 0.229 C24 BEE 24 BEE C25 C25 C 0 1 N N N 10.929 25.867 8.217 -2.693 4.426 2.331 C25 BEE 25 BEE C26 C26 C 0 1 N N N 8.328 26.939 5.471 -0.449 5.483 3.866 C26 BEE 26 BEE O27 O27 O 0 1 N N N 8.755 27.979 4.911 -0.309 4.710 4.790 O27 BEE 27 BEE N28 N28 N 0 1 N N N 7.006 26.555 5.529 -0.767 6.770 4.107 N28 BEE 28 BEE C29 C29 C 0 1 N N N 6.029 27.413 4.902 -0.945 7.236 5.485 C29 BEE 29 BEE O30 O30 O 0 1 N N N 11.983 23.776 2.875 1.928 1.281 0.298 O30 BEE 30 BEE C31 C31 C 0 1 N N N 11.174 24.264 1.744 3.284 1.464 0.711 C31 BEE 31 BEE O32 O32 O 0 1 N N N 14.730 25.209 4.068 -0.995 1.048 2.496 O32 BEE 32 BEE O33 O33 O 0 1 N N N 14.492 22.689 3.206 0.989 -1.031 2.511 O33 BEE 33 BEE C34 C34 C 0 1 N N N 15.186 21.177 5.498 -0.755 -3.035 1.436 C34 BEE 34 BEE O35 O35 O 0 1 N N N 14.260 20.433 5.825 -1.082 -3.740 0.505 O35 BEE 35 BEE N36 N36 N 0 1 N N N 16.378 20.755 5.039 -0.079 -3.562 2.476 N36 BEE 36 BEE C37 C37 C 0 1 N N S 16.707 19.361 4.875 0.260 -4.987 2.482 C37 BEE 37 BEE C38 C38 C 0 1 N N N 16.742 18.989 3.339 1.565 -5.204 1.713 C38 BEE 38 BEE C39 C39 C 0 1 N N N 15.353 19.199 2.609 1.357 -4.838 0.242 C39 BEE 39 BEE C40 C40 C 0 1 N N N 17.232 17.522 3.097 2.661 -4.318 2.309 C40 BEE 40 BEE C41 C41 C 0 1 N N N 18.085 19.201 5.463 0.431 -5.457 3.904 C41 BEE 41 BEE O42 O42 O 0 1 N N N 19.031 19.939 5.059 0.639 -4.653 4.787 O42 BEE 42 BEE N43 N43 N 0 1 N N N 18.192 18.238 6.398 0.352 -6.771 4.193 N43 BEE 43 BEE C44 C44 C 0 1 N N N 19.514 18.036 6.990 0.584 -7.235 5.563 C44 BEE 44 BEE S45 S45 S 0 1 Y N N 2.832 24.222 2.669 8.545 0.355 -5.441 S45 BEE 45 BEE C46 C46 C 0 1 Y N N 3.532 23.399 4.083 7.512 -1.101 -5.459 C46 BEE 46 BEE C47 C47 C 0 1 Y N N 4.862 23.349 4.053 6.672 -0.869 -4.426 C47 BEE 47 BEE C48 C48 C 0 1 Y N N 5.429 23.989 2.853 6.802 0.313 -3.702 C48 BEE 48 BEE C49 C49 C 0 1 Y N N 4.478 24.483 2.053 7.787 1.191 -4.058 C49 BEE 49 BEE S50 S50 S 0 1 Y N N 19.438 17.092 11.613 -8.480 -0.386 -5.514 S50 BEE 50 BEE C51 C51 C 0 1 Y N N 19.034 18.661 10.897 -7.734 -1.214 -4.119 C51 BEE 51 BEE C52 C52 C 0 1 Y N N 17.800 18.710 10.387 -6.752 -0.333 -3.759 C52 BEE 52 BEE C53 C53 C 0 1 Y N N 17.080 17.433 10.550 -6.616 0.844 -4.489 C53 BEE 53 BEE C54 C54 C 0 1 Y N N 17.814 16.511 11.169 -7.447 1.070 -5.531 C54 BEE 54 BEE H2 H2 H 0 1 N N N 9.309 26.237 1.388 4.202 3.177 -1.162 H2 BEE 55 BEE H3 H3 H 0 1 N N N 6.860 26.127 1.858 5.704 2.694 -3.050 H3 BEE 56 BEE H5 H5 H 0 1 N N N 7.314 22.040 3.194 5.889 -1.410 -1.831 H5 BEE 57 BEE H6 H6 H 0 1 N N N 9.757 22.152 2.716 4.391 -0.908 0.054 H6 BEE 58 BEE H8 H8 H 0 1 N N N 14.237 21.608 9.365 -4.175 -3.181 -1.179 H8 BEE 59 BEE H9 H9 H 0 1 N N N 15.199 19.562 10.458 -5.660 -2.710 -3.083 H9 BEE 60 BEE H11 H11 H 0 1 N N N 19.101 20.592 8.841 -5.856 1.401 -1.892 H11 BEE 61 BEE H12 H12 H 0 1 N N N 18.137 22.633 7.749 -4.375 0.910 0.010 H12 BEE 62 BEE H131 1H13 H 0 0 N N N 16.327 23.997 7.276 -3.422 -2.487 1.017 H131 BEE 63 BEE H132 2H13 H 0 0 N N N 15.106 24.123 8.600 -3.503 -0.779 1.512 H132 BEE 64 BEE H15 H15 H 0 1 N N N 15.959 23.103 5.468 -1.654 -1.323 2.338 H15 BEE 65 BEE H16 H16 H 0 1 N N N 13.033 22.480 4.707 0.729 -0.985 0.462 H16 BEE 66 BEE H17 H17 H 0 1 N N N 13.448 24.824 5.656 -0.717 0.990 0.450 H17 BEE 67 BEE H18 H18 H 0 1 N N N 12.293 25.779 3.485 1.650 1.339 2.345 H18 BEE 68 BEE H21 H21 H 0 1 N N N 10.725 26.687 4.682 -0.194 3.020 3.201 H21 BEE 69 BEE H22 H22 H 0 1 N N N 8.880 25.027 6.391 0.539 5.568 1.976 H22 BEE 70 BEE H23 H23 H 0 1 N N N 10.185 27.643 7.199 -1.816 6.277 1.663 H23 BEE 71 BEE H241 1H24 H 0 0 N N N 7.928 25.995 8.459 -2.303 4.881 -0.328 H241 BEE 72 BEE H242 2H24 H 0 0 N N N 8.085 27.780 8.321 -0.573 5.294 -0.244 H242 BEE 73 BEE H243 3H24 H 0 0 N N N 9.033 26.888 9.558 -1.125 3.670 0.233 H243 BEE 74 BEE H251 1H25 H 0 0 N N N 10.532 24.908 8.580 -2.826 4.772 3.356 H251 BEE 75 BEE H252 2H25 H 0 0 N N N 11.310 26.452 9.067 -3.618 4.577 1.774 H252 BEE 76 BEE H253 3H25 H 0 0 N N N 11.747 25.679 7.506 -2.441 3.365 2.335 H253 BEE 77 BEE H28 H28 H 0 1 N N N 6.733 25.711 5.990 -0.879 7.389 3.368 H28 BEE 78 BEE H291 1H29 H 0 0 N N N 5.612 26.908 4.018 -1.198 8.296 5.480 H291 BEE 79 BEE H292 2H29 H 0 0 N N N 6.510 28.353 4.595 -1.750 6.672 5.957 H292 BEE 80 BEE H293 3H29 H 0 0 N N N 5.220 27.631 5.615 -0.020 7.085 6.041 H293 BEE 81 BEE H311 1H31 H 0 0 N N N 11.436 25.319 1.574 3.430 2.495 1.032 H311 BEE 82 BEE H312 2H31 H 0 0 N N N 11.392 23.640 0.865 3.506 0.790 1.538 H312 BEE 83 BEE H32 H32 H 0 1 N N N 14.580 25.367 3.143 -0.479 0.822 3.282 H32 BEE 84 BEE H33 H33 H 0 1 N N N 13.773 22.614 2.590 0.467 -0.799 3.291 H33 BEE 85 BEE H36 H36 H 0 1 N N N 17.067 21.439 4.801 0.182 -2.998 3.221 H36 BEE 86 BEE H37 H37 H 0 1 N N N 15.968 18.709 5.363 -0.540 -5.553 2.006 H37 BEE 87 BEE H38 H38 H 0 1 N N N 17.466 19.691 2.900 1.863 -6.250 1.789 H38 BEE 88 BEE H391 1H39 H 0 0 N N N 15.167 18.357 1.926 1.179 -3.767 0.156 H391 BEE 89 BEE H392 2H39 H 0 0 N N N 15.378 20.138 2.036 2.247 -5.106 -0.328 H392 BEE 90 BEE H393 3H39 H 0 0 N N N 14.548 19.248 3.358 0.498 -5.383 -0.149 H393 BEE 91 BEE H401 1H40 H 0 0 N N N 16.493 16.817 3.506 2.809 -4.578 3.357 H401 BEE 92 BEE H402 2H40 H 0 0 N N N 18.200 17.372 3.598 3.591 -4.472 1.761 H402 BEE 93 BEE H403 3H40 H 0 0 N N N 17.347 17.347 2.017 2.364 -3.272 2.233 H403 BEE 94 BEE H43 H43 H 0 1 N N N 17.405 17.687 6.675 0.141 -7.410 3.494 H43 BEE 95 BEE H441 1H44 H 0 0 N N N 19.520 17.096 7.561 1.591 -6.957 5.875 H441 BEE 96 BEE H442 2H44 H 0 0 N N N 19.747 18.875 7.662 -0.144 -6.774 6.231 H442 BEE 97 BEE H443 3H44 H 0 0 N N N 20.270 17.985 6.192 0.478 -8.319 5.603 H443 BEE 98 BEE H46 H46 H 0 1 N N N 2.939 22.983 4.884 7.552 -1.952 -6.122 H46 BEE 99 BEE H47 H47 H 0 1 N N N 5.461 22.889 4.825 5.906 -1.586 -4.171 H47 BEE 100 BEE H49 H49 H 0 1 N N N 4.690 24.991 1.124 8.040 2.144 -3.618 H49 BEE 101 BEE H51 H51 H 0 1 N N N 19.718 19.496 10.875 -7.991 -2.164 -3.676 H51 BEE 102 BEE H53 H53 H 0 1 N N N 16.070 17.265 10.206 -5.852 1.562 -4.232 H53 BEE 103 BEE H54 H54 H 0 1 N N N 17.461 15.513 11.380 -7.481 1.917 -6.201 H54 BEE 104 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BEE C1 C2 DOUB Y N 1 BEE C1 C6 SING Y N 2 BEE C1 C31 SING N N 3 BEE C2 C3 SING Y N 4 BEE C2 H2 SING N N 5 BEE C3 C4 DOUB Y N 6 BEE C3 H3 SING N N 7 BEE C4 C5 SING Y N 8 BEE C4 C48 SING Y N 9 BEE C5 C6 DOUB Y N 10 BEE C5 H5 SING N N 11 BEE C6 H6 SING N N 12 BEE C7 C8 DOUB Y N 13 BEE C7 C12 SING Y N 14 BEE C7 C13 SING N N 15 BEE C8 C9 SING Y N 16 BEE C8 H8 SING N N 17 BEE C9 C10 DOUB Y N 18 BEE C9 H9 SING N N 19 BEE C10 C11 SING Y N 20 BEE C10 C52 SING Y N 21 BEE C11 C12 DOUB Y N 22 BEE C11 H11 SING N N 23 BEE C12 H12 SING N N 24 BEE C13 O14 SING N N 25 BEE C13 H131 SING N N 26 BEE C13 H132 SING N N 27 BEE O14 C15 SING N N 28 BEE C15 C16 SING N N 29 BEE C15 C34 SING N N 30 BEE C15 H15 SING N N 31 BEE C16 C17 SING N N 32 BEE C16 O33 SING N N 33 BEE C16 H16 SING N N 34 BEE C17 C18 SING N N 35 BEE C17 O32 SING N N 36 BEE C17 H17 SING N N 37 BEE C18 C19 SING N N 38 BEE C18 O30 SING N N 39 BEE C18 H18 SING N N 40 BEE C19 O20 DOUB N N 41 BEE C19 N21 SING N N 42 BEE N21 C22 SING N N 43 BEE N21 H21 SING N N 44 BEE C22 C23 SING N N 45 BEE C22 C26 SING N N 46 BEE C22 H22 SING N N 47 BEE C23 C24 SING N N 48 BEE C23 C25 SING N N 49 BEE C23 H23 SING N N 50 BEE C24 H241 SING N N 51 BEE C24 H242 SING N N 52 BEE C24 H243 SING N N 53 BEE C25 H251 SING N N 54 BEE C25 H252 SING N N 55 BEE C25 H253 SING N N 56 BEE C26 O27 DOUB N N 57 BEE C26 N28 SING N N 58 BEE N28 C29 SING N N 59 BEE N28 H28 SING N N 60 BEE C29 H291 SING N N 61 BEE C29 H292 SING N N 62 BEE C29 H293 SING N N 63 BEE O30 C31 SING N N 64 BEE C31 H311 SING N N 65 BEE C31 H312 SING N N 66 BEE O32 H32 SING N N 67 BEE O33 H33 SING N N 68 BEE C34 O35 DOUB N N 69 BEE C34 N36 SING N N 70 BEE N36 C37 SING N N 71 BEE N36 H36 SING N N 72 BEE C37 C38 SING N N 73 BEE C37 C41 SING N N 74 BEE C37 H37 SING N N 75 BEE C38 C39 SING N N 76 BEE C38 C40 SING N N 77 BEE C38 H38 SING N N 78 BEE C39 H391 SING N N 79 BEE C39 H392 SING N N 80 BEE C39 H393 SING N N 81 BEE C40 H401 SING N N 82 BEE C40 H402 SING N N 83 BEE C40 H403 SING N N 84 BEE C41 O42 DOUB N N 85 BEE C41 N43 SING N N 86 BEE N43 C44 SING N N 87 BEE N43 H43 SING N N 88 BEE C44 H441 SING N N 89 BEE C44 H442 SING N N 90 BEE C44 H443 SING N N 91 BEE S45 C46 SING Y N 92 BEE S45 C49 SING Y N 93 BEE C46 C47 DOUB Y N 94 BEE C46 H46 SING N N 95 BEE C47 C48 SING Y N 96 BEE C47 H47 SING N N 97 BEE C48 C49 DOUB Y N 98 BEE C49 H49 SING N N 99 BEE S50 C51 SING Y N 100 BEE S50 C54 SING Y N 101 BEE C51 C52 DOUB Y N 102 BEE C51 H51 SING N N 103 BEE C52 C53 SING Y N 104 BEE C53 C54 DOUB Y N 105 BEE C53 H53 SING N N 106 BEE C54 H54 SING N N 107 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BEE SMILES ACDLabs 10.04 "O=C(NC)C(NC(=O)C(OCc2ccc(c1ccsc1)cc2)C(O)C(O)C(OCc4ccc(c3ccsc3)cc4)C(=O)NC(C(=O)NC)C(C)C)C(C)C" BEE SMILES_CANONICAL CACTVS 3.341 "CNC(=O)[C@@H](NC(=O)[C@H](OCc1ccc(cc1)c2cscc2)[C@H](O)[C@@H](O)[C@@H](OCc3ccc(cc3)c4cscc4)C(=O)N[C@@H](C(C)C)C(=O)NC)C(C)C" BEE SMILES CACTVS 3.341 "CNC(=O)[CH](NC(=O)[CH](OCc1ccc(cc1)c2cscc2)[CH](O)[CH](O)[CH](OCc3ccc(cc3)c4cscc4)C(=O)N[CH](C(C)C)C(=O)NC)C(C)C" BEE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)[C@@H](C(=O)NC)NC(=O)[C@@H]([C@@H]([C@H]([C@H](C(=O)N[C@@H](C(C)C)C(=O)NC)OCc1ccc(cc1)c2ccsc2)O)O)OCc3ccc(cc3)c4ccsc4" BEE SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)C(C(=O)NC)NC(=O)C(C(C(C(C(=O)NC(C(C)C)C(=O)NC)OCc1ccc(cc1)c2ccsc2)O)O)OCc3ccc(cc3)c4ccsc4" BEE InChI InChI 1.03 "InChI=1S/C40H50N4O8S2/c1-23(2)31(37(47)41-5)43-39(49)35(51-19-25-7-11-27(12-8-25)29-15-17-53-21-29)33(45)34(46)36(40(50)44-32(24(3)4)38(48)42-6)52-20-26-9-13-28(14-10-26)30-16-18-54-22-30/h7-18,21-24,31-36,45-46H,19-20H2,1-6H3,(H,41,47)(H,42,48)(H,43,49)(H,44,50)/t31-,32-,33+,34+,35+,36+/m0/s1" BEE InChIKey InChI 1.03 AJZAPEZJWWQJHC-UWNKZCSISA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BEE "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,4R,5R)-3,4-dihydroxy-N,N'-bis[(1S)-2-methyl-1-(methylcarbamoyl)propyl]-2,5-bis[(4-thiophen-3-ylbenzyl)oxy]hexanediamide (non-preferred name)" BEE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R)-3,4-dihydroxy-N,N'-bis[(2S)-3-methyl-1-methylamino-1-oxo-butan-2-yl]-2,5-bis[(4-thiophen-3-ylphenyl)methoxy]hexanediamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BEE "Create component" 2000-01-31 RCSB BEE "Modify aromatic_flag" 2011-06-04 RCSB BEE "Modify descriptor" 2011-06-04 RCSB BEE "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BEE _pdbx_chem_comp_synonyms.name "INHIBITOR BEA409" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##