data_BER # _chem_comp.id BER _chem_comp.name BERBERINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H18 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2001-09-12 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JUM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BER C1 C1 C 0 1 Y N N 109.426 45.703 92.527 -0.540 -0.194 0.013 C1 BER 1 BER C2 C2 C 0 1 Y N N 108.127 45.512 91.775 -2.025 -0.139 0.014 C2 BER 2 BER N1 N1 N 1 1 Y N N 110.670 45.869 91.777 0.078 -1.379 -0.033 N1 BER 3 BER C3 C3 C 0 1 Y N N 109.444 45.704 93.976 0.171 0.993 0.038 C3 BER 4 BER C4 C4 C 0 1 Y N N 108.151 45.226 90.292 -2.739 -1.294 0.327 C4 BER 5 BER C5 C5 C 0 1 Y N N 106.865 45.566 92.491 -2.676 1.067 -0.264 C5 BER 6 BER C6 C6 C 0 1 Y N N 111.918 46.001 92.495 1.391 -1.476 0.008 C6 BER 7 BER C7 C7 C 0 1 N N N 110.680 45.888 90.228 -0.697 -2.620 -0.141 C7 BER 8 BER C8 C8 C 0 1 Y N N 110.680 45.846 94.671 1.573 0.945 0.066 C8 BER 9 BER C9 C9 C 0 1 Y N N 106.895 45.024 89.600 -4.124 -1.310 0.330 C9 BER 10 BER C10 C10 C 0 1 N N N 109.488 45.143 89.503 -1.975 -2.544 0.686 C10 BER 11 BER C11 C11 C 0 1 Y N N 105.635 45.359 91.789 -4.062 1.054 -0.257 C11 BER 12 BER C12 C12 C 0 1 Y N N 111.949 45.985 93.943 2.197 -0.332 0.067 C12 BER 13 BER C13 C13 C 0 1 Y N N 110.667 45.841 96.079 2.360 2.105 0.098 C13 BER 14 BER C14 C14 C 0 1 Y N N 105.632 45.088 90.342 -4.777 -0.121 0.030 C14 BER 15 BER O1 O1 O 0 1 N N N 104.334 45.356 92.234 -4.942 2.053 -0.494 O1 BER 16 BER C15 C15 C 0 1 Y N N 113.224 46.107 94.679 3.601 -0.411 0.117 C15 BER 17 BER C16 C16 C 0 1 Y N N 111.894 45.967 96.814 3.718 2.001 0.144 C16 BER 18 BER O2 O2 O 0 1 N N N 104.302 44.932 89.927 -6.101 0.148 -0.040 O2 BER 19 BER C17 C17 C 0 1 N N N 103.527 44.779 91.146 -6.206 1.586 0.023 C17 BER 20 BER C18 C18 C 0 1 Y N N 113.188 46.093 96.162 4.343 0.753 0.159 C18 BER 21 BER O3 O3 O 0 1 N N N 114.441 46.227 93.930 4.220 -1.621 0.129 O3 BER 22 BER O4 O4 O 0 1 N N N 114.393 46.211 96.949 5.701 0.683 0.210 O4 BER 23 BER C19 C19 C 0 1 N N N 115.772 46.352 94.530 4.458 -1.976 -1.234 C19 BER 24 BER C20 C20 C 0 1 N N N 114.392 46.207 98.420 6.183 2.028 0.237 C20 BER 25 BER H31 1H3 H 0 1 N N N 108.510 45.596 94.553 -0.345 1.941 0.035 H31 BER 26 BER H51 1H5 H 0 1 N N N 106.840 45.765 93.575 -2.123 1.970 -0.474 H51 BER 27 BER H61 1H6 H 0 1 N N N 112.858 46.115 91.930 1.853 -2.452 -0.003 H61 BER 28 BER H71 1H7 H 0 1 N N N 110.738 46.941 89.866 -0.090 -3.453 0.214 H71 BER 29 BER H72 2H7 H 0 1 N N N 111.652 45.490 89.854 -0.957 -2.790 -1.186 H72 BER 30 BER H91 1H9 H 0 1 N N N 106.900 44.822 88.515 -4.675 -2.212 0.557 H91 BER 31 BER H101 1H10 H 0 0 N N N 109.755 44.083 89.283 -1.721 -2.522 1.746 H101 BER 32 BER H102 2H10 H 0 0 N N N 109.359 45.517 88.460 -2.593 -3.418 0.480 H102 BER 33 BER H131 1H13 H 0 0 N N N 109.701 45.739 96.602 1.891 3.078 0.086 H131 BER 34 BER H161 1H16 H 0 0 N N N 111.840 45.967 97.915 4.319 2.898 0.169 H161 BER 35 BER H171 1H17 H 0 0 N N N 103.214 43.726 91.340 -6.341 1.914 1.054 H171 BER 36 BER H172 2H17 H 0 0 N N N 102.504 45.217 91.075 -7.027 1.937 -0.601 H172 BER 37 BER H191 1H19 H 0 0 N N N 116.718 46.445 93.947 4.956 -2.945 -1.276 H191 BER 38 BER H192 2H19 H 0 0 N N N 115.733 47.220 95.228 3.508 -2.033 -1.766 H192 BER 39 BER H193 3H19 H 0 0 N N N 115.899 45.486 95.221 5.091 -1.222 -1.701 H193 BER 40 BER H201 1H20 H 0 0 N N N 115.322 46.298 99.027 7.273 2.022 0.279 H201 BER 41 BER H202 2H20 H 0 0 N N N 113.694 47.009 98.755 5.857 2.549 -0.662 H202 BER 42 BER H203 3H20 H 0 0 N N N 113.866 45.280 98.750 5.789 2.537 1.117 H203 BER 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BER C1 C2 SING Y N 1 BER C1 N1 DOUB Y N 2 BER C1 C3 SING Y N 3 BER C2 C4 DOUB Y N 4 BER C2 C5 SING Y N 5 BER N1 C6 SING Y N 6 BER N1 C7 SING N N 7 BER C3 C8 DOUB Y N 8 BER C3 H31 SING N N 9 BER C4 C9 SING Y N 10 BER C4 C10 SING N N 11 BER C5 C11 DOUB Y N 12 BER C5 H51 SING N N 13 BER C6 C12 DOUB Y N 14 BER C6 H61 SING N N 15 BER C7 C10 SING N N 16 BER C7 H71 SING N N 17 BER C7 H72 SING N N 18 BER C8 C12 SING Y N 19 BER C8 C13 SING Y N 20 BER C9 C14 DOUB Y N 21 BER C9 H91 SING N N 22 BER C10 H101 SING N N 23 BER C10 H102 SING N N 24 BER C11 C14 SING Y N 25 BER C11 O1 SING N N 26 BER C12 C15 SING Y N 27 BER C13 C16 DOUB Y N 28 BER C13 H131 SING N N 29 BER C14 O2 SING N N 30 BER O1 C17 SING N N 31 BER C15 C18 DOUB Y N 32 BER C15 O3 SING N N 33 BER C16 C18 SING Y N 34 BER C16 H161 SING N N 35 BER O2 C17 SING N N 36 BER C17 H171 SING N N 37 BER C17 H172 SING N N 38 BER C18 O4 SING N N 39 BER O3 C19 SING N N 40 BER O4 C20 SING N N 41 BER C19 H191 SING N N 42 BER C19 H192 SING N N 43 BER C19 H193 SING N N 44 BER C20 H201 SING N N 45 BER C20 H202 SING N N 46 BER C20 H203 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BER SMILES ACDLabs 10.04 "O1c2c(OC1)cc5c(c2)c4cc3ccc(OC)c(OC)c3c[n+]4CC5" BER SMILES_CANONICAL CACTVS 3.341 COc1ccc2cc3c4cc5OCOc5cc4CC[n+]3cc2c1OC BER SMILES CACTVS 3.341 COc1ccc2cc3c4cc5OCOc5cc4CC[n+]3cc2c1OC BER SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COc1ccc2cc-3[n+](cc2c1OC)CCc4c3cc5c(c4)OCO5" BER SMILES "OpenEye OEToolkits" 1.5.0 "COc1ccc2cc-3[n+](cc2c1OC)CCc4c3cc5c(c4)OCO5" BER InChI InChI 1.03 "InChI=1S/C20H18NO4/c1-22-17-4-3-12-7-16-14-9-19-18(24-11-25-19)8-13(14)5-6-21(16)10-15(12)20(17)23-2/h3-4,7-10H,5-6,11H2,1-2H3/q+1" BER InChIKey InChI 1.03 YBHILYKTIRIUTE-UHFFFAOYSA-N # _pdbx_chem_comp_identifier.comp_id BER _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "9,10-dimethoxy-5,6-dihydro[1,3]dioxolo[4,5-g]isoquino[3,2-a]isoquinolin-7-ium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BER "Create component" 2001-09-12 RCSB BER "Modify aromatic_flag" 2011-06-04 RCSB BER "Modify descriptor" 2011-06-04 RCSB ##