data_BF9 # _chem_comp.id BF9 _chem_comp.name "[(4Z)-2-[(1R,2S)-1-amino-2-hydroxypropyl]-4-{[4-(benzenecarbonyl)phenyl]methylidene}-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C22 H21 N3 O5" _chem_comp.mon_nstd_parent_comp_id "THR, PHE, GLY" _chem_comp.pdbx_synonyms "PEPTIDE DERIVED CHROMOPHORE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-12-19 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 407.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BF9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5YR2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BF9 C01 C01 C 0 1 Y N N N N N 5.097 -14.094 68.081 -5.883 0.937 0.625 C01 BF9 1 BF9 C02 C02 C 0 1 Y N N N N N 3.747 -14.157 68.404 -7.086 1.605 0.707 C02 BF9 2 BF9 C03 C03 C 0 1 Y N N N N N 3.122 -13.090 69.041 -8.262 0.967 0.353 C03 BF9 3 BF9 C04 C04 C 0 1 Y N N N N N 3.842 -11.946 69.376 -8.239 -0.346 -0.084 C04 BF9 4 BF9 C05 C05 C 0 1 Y N N N N N 5.190 -11.895 69.052 -7.043 -1.027 -0.171 C05 BF9 5 BF9 C06 C06 C 0 1 Y N N N N N 5.824 -12.969 68.423 -5.852 -0.388 0.184 C06 BF9 6 BF9 C07 C07 C 0 1 N N N N N N 7.285 -12.876 68.053 -4.567 -1.112 0.094 C07 BF9 7 BF9 CZ CZ C 0 1 Y N N N N N 8.213 -12.022 68.865 -3.309 -0.361 -0.097 C09 BF9 8 BF9 CE2 CE2 C 0 1 Y N N N N N 8.088 -11.931 70.247 -2.085 -0.960 0.213 C10 BF9 9 BF9 CD2 CD2 C 0 1 Y N N N N N 8.947 -11.112 70.954 -0.921 -0.268 0.038 C11 BF9 10 BF9 CG2 CG2 C 0 1 Y N N N N N 9.982 -10.448 70.299 -0.954 1.044 -0.455 C12 BF9 11 BF9 CD1 CD1 C 0 1 Y N N N N N 10.069 -10.487 68.911 -2.183 1.643 -0.767 C13 BF9 12 BF9 CE1 CE1 C 0 1 Y N N N N N 9.199 -11.302 68.203 -3.344 0.946 -0.594 C14 BF9 13 BF9 CB2 CB2 C 0 1 N N N N N N 10.816 -9.478 71.006 0.295 1.789 -0.644 C15 BF9 14 BF9 CA2 CA2 C 0 1 N N N Y N N 10.802 -9.176 72.440 1.497 1.168 -0.457 C16 BF9 15 BF9 C1 C1 C 0 1 N N N Y N N 10.475 -9.291 74.598 2.980 -0.337 0.049 C18 BF9 16 BF9 C2 C2 C 0 1 N N N Y N N 11.519 -8.127 73.132 2.841 1.728 -0.709 C20 BF9 17 BF9 CA3 CA3 C 0 1 N N N Y N N 11.831 -7.282 75.414 5.164 0.818 -0.454 C22 BF9 18 BF9 C3 C3 C 0 1 N N N Y N Y 13.159 -7.505 76.067 5.710 1.335 0.851 C23 BF9 19 BF9 CA1 CA1 C 0 1 N N R Y N N 9.967 -9.726 75.934 3.587 -1.636 0.512 C24 BF9 20 BF9 CB1 CB1 C 0 1 N N S N N N 9.611 -11.218 75.997 3.628 -2.625 -0.655 C27 BF9 21 BF9 CG1 CG1 C 0 1 N N N N N N 8.476 -11.594 75.077 4.245 -3.944 -0.184 C28 BF9 22 BF9 N2 N2 N 0 1 N N N Y N N 10.175 -9.886 73.394 1.706 -0.100 0.008 N17 BF9 23 BF9 N3 N3 N 0 1 N N N Y N N 11.301 -8.225 74.429 3.703 0.742 -0.376 N19 BF9 24 BF9 N1 N1 N 0 1 N N N Y Y N 8.810 -8.875 76.281 2.774 -2.196 1.600 N25 BF9 25 BF9 O08 O08 O 0 1 N N N N N N 7.678 -13.425 67.038 -4.545 -2.324 0.176 O08 BF9 26 BF9 O2 O2 O 0 1 N N N Y N N 12.286 -7.192 72.550 3.112 2.838 -1.127 O21 BF9 27 BF9 O3 O3 O 0 1 N N N Y N Y 13.652 -6.495 76.549 4.957 1.611 1.755 O26 BF9 28 BF9 OG1 OG1 O 0 1 N N N N N N 9.199 -11.569 77.329 4.419 -2.080 -1.713 O29 BF9 29 BF9 H1 H1 H 0 1 N N N N N N 5.574 -14.916 67.568 -4.965 1.438 0.897 H1 BF9 30 BF9 H22 H2 H 0 1 N N N N N N 3.178 -15.042 68.158 -7.111 2.630 1.048 H2 BF9 31 BF9 H3 H3 H 0 1 N N N N N N 2.070 -13.149 69.278 -9.201 1.495 0.420 H3 BF9 32 BF9 H4 H4 H 0 1 N N N N N N 3.362 -11.118 69.876 -9.161 -0.838 -0.358 H4 BF9 33 BF9 H5 H5 H 0 1 N N N N N N 5.759 -11.009 69.290 -7.027 -2.052 -0.512 H5 BF9 34 BF9 H6 H6 H 0 1 N N N N N N 7.326 -12.496 70.763 -2.059 -1.971 0.593 H6 BF9 35 BF9 H7 H7 H 0 1 N N N N N N 8.816 -10.986 72.019 0.025 -0.731 0.278 H7 BF9 36 BF9 H8 H8 H 0 1 N N N N N N 10.804 -9.890 68.392 -2.210 2.653 -1.146 H8 BF9 37 BF9 H9 H9 H 0 1 N N N N N N 9.289 -11.377 67.129 -4.291 1.405 -0.838 H9 BF9 38 BF9 H10 H10 H 0 1 N N N N N N 11.521 -8.922 70.405 0.265 2.830 -0.932 H10 BF9 39 BF9 HA31 H13 H 0 1 N N N Y N N 11.892 -6.306 74.910 5.450 1.493 -1.261 H13 BF9 40 BF9 HA32 H14 H 0 1 N N N Y N N 11.090 -7.230 76.225 5.569 -0.175 -0.651 H14 BF9 41 BF9 HA1 H17 H 0 1 N N N Y N N 10.760 -9.544 76.674 4.601 -1.456 0.872 H17 BF9 42 BF9 H18 H18 H 0 1 N N N N N N 10.501 -11.800 75.718 2.615 -2.805 -1.014 H18 BF9 43 BF9 H19 H19 H 0 1 N N N N N N 8.270 -12.671 75.168 3.641 -4.359 0.623 H19 BF9 44 BF9 H20 H20 H 0 1 N N N N N N 7.576 -11.024 75.353 4.274 -4.648 -1.016 H20 BF9 45 BF9 H21 H21 H 0 1 N N N N N N 8.753 -11.361 74.038 5.258 -3.764 0.175 H21 BF9 46 BF9 H2 H22 H 0 1 N Y N Y Y N 8.451 -9.147 77.174 1.830 -2.372 1.292 H22 BF9 47 BF9 H H23 H 0 1 N N N Y Y N 9.099 -7.918 76.316 3.196 -3.034 1.972 H23 BF9 48 BF9 H26 H26 H 0 1 N N N N N N 9.889 -11.347 77.943 5.335 -1.894 -1.464 H26 BF9 49 BF9 OXT OXT O 0 1 N Y N Y N Y 13.484 -8.747 76.157 7.034 1.488 1.011 O1 BF9 50 BF9 HXT HXT H 0 1 N Y N Y N Y 14.252 -8.835 76.709 7.338 1.822 1.866 H11 BF9 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BF9 O08 C07 DOUB N N 1 BF9 C07 C06 SING N N 2 BF9 C07 CZ SING N N 3 BF9 C01 C02 DOUB Y N 4 BF9 C01 C06 SING Y N 5 BF9 CE1 CZ DOUB Y N 6 BF9 CE1 CD1 SING Y N 7 BF9 C02 C03 SING Y N 8 BF9 C06 C05 DOUB Y N 9 BF9 CZ CE2 SING Y N 10 BF9 CD1 CG2 DOUB Y N 11 BF9 C03 C04 DOUB Y N 12 BF9 C05 C04 SING Y N 13 BF9 CE2 CD2 DOUB Y N 14 BF9 CG2 CD2 SING Y N 15 BF9 CG2 CB2 SING N N 16 BF9 CB2 CA2 DOUB N Z 17 BF9 CA2 C2 SING N N 18 BF9 CA2 N2 SING N N 19 BF9 O2 C2 DOUB N N 20 BF9 C2 N3 SING N N 21 BF9 N2 C1 DOUB N N 22 BF9 N3 C1 SING N N 23 BF9 N3 CA3 SING N N 24 BF9 C1 CA1 SING N N 25 BF9 CG1 CB1 SING N N 26 BF9 CA3 C3 SING N N 27 BF9 CA1 CB1 SING N N 28 BF9 CA1 N1 SING N N 29 BF9 CB1 OG1 SING N N 30 BF9 C3 O3 DOUB N N 31 BF9 C01 H1 SING N N 32 BF9 C02 H22 SING N N 33 BF9 C03 H3 SING N N 34 BF9 C04 H4 SING N N 35 BF9 C05 H5 SING N N 36 BF9 CE2 H6 SING N N 37 BF9 CD2 H7 SING N N 38 BF9 CD1 H8 SING N N 39 BF9 CE1 H9 SING N N 40 BF9 CB2 H10 SING N N 41 BF9 CA3 HA31 SING N N 42 BF9 CA3 HA32 SING N N 43 BF9 CA1 HA1 SING N N 44 BF9 CB1 H18 SING N N 45 BF9 CG1 H19 SING N N 46 BF9 CG1 H20 SING N N 47 BF9 CG1 H21 SING N N 48 BF9 N1 H2 SING N N 49 BF9 N1 H SING N N 50 BF9 OG1 H26 SING N N 51 BF9 C3 OXT SING N N 52 BF9 OXT HXT SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BF9 SMILES ACDLabs 12.01 "c1ccccc1C(c3ccc(\C=C2\C(N(C(C(C(O)C)N)=N2)CC(=O)O)=O)cc3)=O" BF9 InChI InChI 1.03 "InChI=1S/C22H21N3O5/c1-13(26)19(23)21-24-17(22(30)25(21)12-18(27)28)11-14-7-9-16(10-8-14)20(29)15-5-3-2-4-6-15/h2-11,13,19,26H,12,23H2,1H3,(H,27,28)/b17-11-/t13-,19-/m0/s1" BF9 InChIKey InChI 1.03 QQKMSEAMLFRSCX-GBQBQLPHSA-N BF9 SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)[C@H](N)C1=NC(=C/c2ccc(cc2)C(=O)c3ccccc3)\C(=O)N1CC(O)=O" BF9 SMILES CACTVS 3.385 "C[CH](O)[CH](N)C1=NC(=Cc2ccc(cc2)C(=O)c3ccccc3)C(=O)N1CC(O)=O" BF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]([C@@H](C1=N/C(=C\c2ccc(cc2)C(=O)c3ccccc3)/C(=O)N1CC(=O)O)N)O" BF9 SMILES "OpenEye OEToolkits" 2.0.6 "CC(C(C1=NC(=Cc2ccc(cc2)C(=O)c3ccccc3)C(=O)N1CC(=O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BF9 "SYSTEMATIC NAME" ACDLabs 12.01 "[(4Z)-2-[(1R,2S)-1-amino-2-hydroxypropyl]-4-{[4-(benzenecarbonyl)phenyl]methylidene}-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid" BF9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(4~{Z})-2-[(1~{R},2~{S})-1-azanyl-2-oxidanyl-propyl]-5-oxidanylidene-4-[[4-(phenylcarbonyl)phenyl]methylidene]imidazol-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BF9 "Create component" 2018-12-19 PDBJ BF9 "Initial release" 2019-01-30 RCSB BF9 "Modify synonyms" 2021-03-01 PDBE BF9 "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BF9 _pdbx_chem_comp_synonyms.name "PEPTIDE DERIVED CHROMOPHORE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #