data_BFD # _chem_comp.id BFD _chem_comp.name "ASPARTATE BERYLLIUM TRIFLUORIDE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H6 Be F3 N O4" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2000-09-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 198.102 _chem_comp.one_letter_code D _chem_comp.three_letter_code BFD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1J97 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BFD N N N 0 1 N N N Y Y N 60.744 16.367 43.646 ? ? ? N BFD 1 BFD CA CA C 0 1 N N S Y N N 60.353 15.613 44.812 ? ? ? CA BFD 2 BFD C C C 0 1 N N N Y N Y 59.503 16.624 45.661 ? ? ? C BFD 3 BFD O O O 0 1 N N N Y N Y 59.594 17.841 45.508 ? ? ? O BFD 4 BFD CB CB C 0 1 N N N N N N 61.622 15.177 45.568 ? ? ? CB BFD 5 BFD CG CG C 0 1 N N N N N N 61.331 14.702 46.983 ? ? ? CG BFD 6 BFD OD1 OD1 O 0 1 N N N N N N 60.512 13.755 47.120 ? ? ? OD1 BFD 7 BFD OD2 OD2 O 0 1 N N N N N N 61.897 15.337 47.897 ? ? ? OD2 BFD 8 BFD OXT OXT O 0 1 N Y N Y N Y 58.665 16.102 46.548 ? ? ? OXT BFD 9 BFD BE BE BE -2 0 N N N N N N 59.852 13.201 48.387 ? ? ? BE BFD 10 BFD F1 F1 F 0 1 N N N N N N 59.793 11.701 48.229 ? ? ? F1 BFD 11 BFD F2 F2 F 0 1 N N N N N N 60.602 13.497 49.669 ? ? ? F2 BFD 12 BFD F3 F3 F 0 1 N N N N N N 58.447 13.775 48.481 ? ? ? F3 BFD 13 BFD H H H 0 1 N N N Y Y N 61.296 15.710 43.094 ? ? ? H BFD 14 BFD H2 HN2 H 0 1 N Y N Y Y N 61.223 17.242 43.856 ? ? ? H2 BFD 15 BFD HA HA H 0 1 N N N Y N N 59.774 14.689 44.578 ? ? ? HA BFD 16 BFD HB2 1HB H 0 1 N N N N N N 62.182 14.402 44.994 ? ? ? HB2 BFD 17 BFD HB3 2HB H 0 1 N N N N N N 62.385 15.989 45.568 ? ? ? HB3 BFD 18 BFD HXT HXT H 0 1 N Y N Y N Y 58.150 16.713 47.061 ? ? ? HXT BFD 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BFD N CA SING N N 1 BFD N H SING N N 2 BFD N H2 SING N N 3 BFD CA C SING N N 4 BFD CA CB SING N N 5 BFD CA HA SING N N 6 BFD C O DOUB N N 7 BFD C OXT SING N N 8 BFD CB CG SING N N 9 BFD CB HB2 SING N N 10 BFD CB HB3 SING N N 11 BFD CG OD1 SING N N 12 BFD CG OD2 DOUB N N 13 BFD OD1 BE SING N N 14 BFD OXT HXT SING N N 15 BFD BE F1 SING N N 16 BFD BE F2 SING N N 17 BFD BE F3 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BFD SMILES ACDLabs 10.04 "O=C(O[Be-2](F)(F)F)CC(N)C(=O)O" BFD SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CC(=O)O[Be--](F)(F)F)C(O)=O" BFD SMILES CACTVS 3.341 "N[CH](CC(=O)O[Be--](F)(F)F)C(O)=O" BFD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[Be-2](OC(=O)C[C@@H](C(=O)O)N)(F)(F)F" BFD SMILES "OpenEye OEToolkits" 1.5.0 "[Be-2](OC(=O)CC(C(=O)O)N)(F)(F)F" BFD InChI InChI 1.03 "InChI=1S/C4H7NO4.Be.3FH/c5-2(4(8)9)1-3(6)7;;;;/h2H,1,5H2,(H,6,7)(H,8,9);;3*1H/q;+2;;;/p-4/t2-;;;;/m0..../s1" BFD InChIKey InChI 1.03 AHUXVQYBCVIJSZ-AIDJSRAFSA-J # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BFD "SYSTEMATIC NAME" ACDLabs 10.04 "(L-aspartato-kappaO~4~)(trifluoro)beryllate(2-)" BFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(3S)-3-amino-4-hydroxy-4-oxo-butanoyl]oxy-trifluoro-beryllium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BFD "Create component" 2000-09-26 RCSB BFD "Modify descriptor" 2011-06-04 RCSB BFD "Modify backbone" 2023-11-03 PDBE BFD "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id BFD _pdbx_chem_comp_pcm.modified_residue_id ASP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #