data_BGH # _chem_comp.id BGH _chem_comp.name "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C13 H20 N5 O9 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-10-04 _chem_comp.pdbx_modified_date 2018-10-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.300 _chem_comp.one_letter_code G _chem_comp.three_letter_code BGH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BGH "C1'" C1 C 0 1 N N R 239.432 258.190 242.003 0.198 -1.480 -0.680 "C1'" BGH 1 BGH C2 C2 C 0 1 N N N 234.992 257.640 242.357 1.556 1.707 2.086 C2 BGH 2 BGH "C2'" C3 C 0 1 N N R 239.179 259.643 241.676 0.036 -2.306 0.615 "C2'" BGH 3 BGH "C3'" C4 C 0 1 N N R 240.248 260.301 242.498 -1.479 -2.249 0.910 "C3'" BGH 4 BGH C4 C5 C 0 1 N N N 237.198 257.635 243.032 1.765 0.274 0.278 C4 BGH 5 BGH "C4'" C6 C 0 1 N N R 241.411 259.407 242.270 -2.054 -1.395 -0.241 "C4'" BGH 6 BGH C5 C7 C 0 1 N N N 236.773 257.177 244.364 3.025 0.786 0.007 C5 BGH 7 BGH "C5'" C8 C 0 1 N N N 242.353 259.631 243.417 -3.182 -0.498 0.273 "C5'" BGH 8 BGH C6 C9 C 0 1 N N N 235.325 256.956 244.577 3.540 1.795 0.835 C6 BGH 9 BGH C8 C10 C 0 1 N N N 239.145 257.401 244.350 2.572 -0.840 -1.569 C8 BGH 10 BGH N1 N1 N 0 1 N N N 234.537 257.224 243.540 2.787 2.242 1.861 N1 BGH 11 BGH N2 N2 N 0 1 N N N 234.038 257.900 241.266 0.805 2.174 3.134 N2 BGH 12 BGH N3 N3 N 0 1 N N N 236.280 257.843 242.092 1.068 0.758 1.319 N3 BGH 13 BGH N7 N4 N 0 1 N N N 237.930 257.058 245.043 3.571 0.138 -1.119 N7 BGH 14 BGH N9 N5 N 0 1 N N N 238.516 257.747 243.089 1.443 -0.708 -0.641 N9 BGH 15 BGH "O2'" O1 O 0 1 N N N 239.442 259.915 240.313 0.455 -3.656 0.403 "O2'" BGH 16 BGH "O3'" O2 O 0 1 N N N 240.565 261.636 242.181 -2.043 -3.562 0.892 "O3'" BGH 17 BGH "O4'" O3 O 0 1 N N N 240.803 258.137 242.389 -0.942 -0.593 -0.697 "O4'" BGH 18 BGH "O5'" O4 O 0 1 N N N 242.945 258.393 243.712 -3.728 0.252 -0.815 "O5'" BGH 19 BGH O6 O5 O 0 1 N N N 234.801 256.583 245.636 4.647 2.268 0.623 O6 BGH 20 BGH OP1 O6 O 0 1 N N N 244.196 258.732 245.871 -6.087 0.624 0.003 OP1 BGH 21 BGH OP2 O7 O 0 1 N N N 241.927 257.857 245.992 -4.452 2.526 0.287 OP2 BGH 22 BGH P P1 P 0 1 N N N 243.185 257.879 245.197 -4.936 1.301 -0.637 P BGH 23 BGH C71 C11 C 0 1 N N N 238.152 256.687 246.353 4.776 0.372 -1.675 C71 BGH 24 BGH C72 C12 C 0 1 N N N 237.504 255.548 247.067 5.261 -0.491 -2.812 C72 BGH 25 BGH "C6'" C13 C 0 1 N N N 238.255 260.172 239.580 0.982 -4.291 1.569 "C6'" BGH 26 BGH O71 O8 O 0 1 N N N 238.972 257.342 246.961 5.470 1.276 -1.261 O71 BGH 27 BGH H1 H1 H 0 1 N N N 239.261 257.580 241.104 0.184 -2.132 -1.553 H1 BGH 28 BGH H2 H2 H 0 1 N N N 238.173 259.958 241.991 0.602 -1.854 1.430 H2 BGH 29 BGH H3 H3 H 0 1 N N N 239.959 260.234 243.557 -1.663 -1.769 1.871 H3 BGH 30 BGH H4 H4 H 0 1 N N N 241.891 259.579 241.296 -2.414 -2.036 -1.046 H4 BGH 31 BGH H5 H5 H 0 1 N N N 243.126 260.361 243.134 -3.963 -1.115 0.717 H5 BGH 32 BGH H6 H6 H 0 1 N N N 241.800 260.003 244.292 -2.788 0.186 1.024 H6 BGH 33 BGH H7 H7 H 0 1 N N N 239.836 256.550 244.260 2.252 -0.612 -2.586 H7 BGH 34 BGH H8 H8 H 0 1 N N N 233.550 257.107 243.653 3.124 2.944 2.440 H8 BGH 35 BGH H9 H9 H 0 1 N N N 234.369 258.214 240.376 1.153 2.877 3.705 H9 BGH 36 BGH H10 H10 H 0 1 N N N 233.059 257.762 241.415 -0.074 1.801 3.305 H10 BGH 37 BGH H11 H11 H 0 1 N N N 241.250 261.946 242.762 -2.992 -3.585 1.072 H11 BGH 38 BGH H13 H13 H 0 1 N N N 242.033 258.395 246.768 -3.699 3.016 -0.072 H13 BGH 39 BGH H14 H14 H 0 1 N N N 237.900 255.484 248.091 4.473 -1.185 -3.102 H14 BGH 40 BGH H15 H15 H 0 1 N N N 236.417 255.709 247.104 5.520 0.141 -3.662 H15 BGH 41 BGH H16 H16 H 0 1 N N N 237.718 254.611 246.532 6.140 -1.051 -2.493 H16 BGH 42 BGH H17 H17 H 0 1 N N N 238.509 260.377 238.530 1.851 -3.737 1.923 H17 BGH 43 BGH H18 H18 H 0 1 N N N 237.595 259.294 239.632 0.221 -4.310 2.348 H18 BGH 44 BGH H19 H19 H 0 1 N N N 237.740 261.044 240.010 1.277 -5.312 1.325 H19 BGH 45 BGH OP3 OP3 O 0 1 N N N 243.761 256.406 244.985 -5.378 1.860 -2.081 OP3 BGH 46 BGH H20 H20 H 0 1 N N N 239.669 258.252 244.810 2.984 -1.848 -1.522 H20 BGH 47 BGH H12 H12 H 0 1 N N N 244.644 256.358 245.332 -6.103 2.498 -2.051 H12 BGH 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BGH "C6'" "O2'" SING N N 1 BGH "O2'" "C2'" SING N N 2 BGH N2 C2 SING N N 3 BGH "C2'" "C1'" SING N N 4 BGH "C2'" "C3'" SING N N 5 BGH "C1'" "O4'" SING N N 6 BGH "C1'" N9 SING N N 7 BGH N3 C2 DOUB N N 8 BGH N3 C4 SING N N 9 BGH "O3'" "C3'" SING N N 10 BGH "C4'" "O4'" SING N N 11 BGH "C4'" "C3'" SING N N 12 BGH "C4'" "C5'" SING N N 13 BGH C2 N1 SING N N 14 BGH C4 N9 SING N N 15 BGH C4 C5 DOUB N N 16 BGH N9 C8 SING N N 17 BGH "C5'" "O5'" SING N N 18 BGH N1 C6 SING N N 19 BGH "O5'" P SING N N 20 BGH C8 N7 SING N N 21 BGH C5 C6 SING N N 22 BGH C5 N7 SING N N 23 BGH C6 O6 DOUB N N 24 BGH N7 C71 SING N N 25 BGH P OP1 DOUB N N 26 BGH P OP2 SING N N 27 BGH C71 O71 DOUB N N 28 BGH C71 C72 SING N N 29 BGH "C1'" H1 SING N N 30 BGH "C2'" H2 SING N N 31 BGH "C3'" H3 SING N N 32 BGH "C4'" H4 SING N N 33 BGH "C5'" H5 SING N N 34 BGH "C5'" H6 SING N N 35 BGH C8 H7 SING N N 36 BGH N1 H8 SING N N 37 BGH N2 H9 SING N N 38 BGH N2 H10 SING N N 39 BGH "O3'" H11 SING N N 40 BGH OP2 H13 SING N N 41 BGH C72 H14 SING N N 42 BGH C72 H15 SING N N 43 BGH C72 H16 SING N N 44 BGH "C6'" H17 SING N N 45 BGH "C6'" H18 SING N N 46 BGH "C6'" H19 SING N N 47 BGH P OP3 SING N N 48 BGH C8 H20 SING N N 49 BGH OP3 H12 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BGH InChI InChI 1.03 "InChI=1S/C13H20N5O9P/c1-5(19)17-4-18(10-7(17)11(21)16-13(14)15-10)12-9(25-2)8(20)6(27-12)3-26-28(22,23)24/h6,8-9,12,20H,3-4H2,1-2H3,(H2,22,23,24)(H3,14,15,16,21)/t6-,8-,9-,12-/m1/s1" BGH InChIKey InChI 1.03 RRIGHVHFMJOEOI-WOUKDFQISA-N BGH SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2CN(C(C)=O)C3=C2N=C(N)NC3=O" BGH SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2CN(C(C)=O)C3=C2N=C(N)NC3=O" BGH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)OC" BGH SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)O)O)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BGH "Create component" 2017-10-04 EBI BGH "Other modification" 2017-11-02 EBI BGH "Initial release" 2018-01-24 RCSB BGH "Other modification" 2018-10-20 EBI #