data_BGM # _chem_comp.id BGM _chem_comp.name "8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 Br N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-11-21 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.117 _chem_comp.one_letter_code G _chem_comp.three_letter_code BGM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1N7A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BGM P P P 0 1 N N N 11.870 17.189 57.614 1.884 -1.918 -4.898 P BGM 1 BGM OP1 O1P O 0 1 N N N 12.970 18.062 58.071 2.848 -1.580 -5.997 OP1 BGM 2 BGM OP2 O2P O 0 1 N N N 10.861 17.778 56.725 0.345 -1.506 -5.177 OP2 BGM 3 BGM "O5'" O5* O 0 1 N N N 12.533 15.896 56.982 2.211 -1.232 -3.468 "O5'" BGM 4 BGM "C5'" C5* C 0 1 N N N 11.692 14.763 56.713 1.348 -1.500 -2.377 "C5'" BGM 5 BGM "C4'" C4* C 0 1 N N R 12.607 13.719 56.107 2.156 -1.432 -1.088 "C4'" BGM 6 BGM "O4'" O4* O 0 1 N N N 11.998 12.424 56.238 2.678 -0.093 -0.958 "O4'" BGM 7 BGM "C1'" C1* C 0 1 N N R 11.998 11.748 54.968 2.101 0.516 0.211 "C1'" BGM 8 BGM N9 N9 N 0 1 Y N N 10.821 10.901 54.966 1.818 1.923 -0.049 N9 BGM 9 BGM C8 C8 C 0 1 Y N N 9.480 11.209 55.074 1.884 2.962 0.852 C8 BGM 10 BGM N7 N7 N 0 1 Y N N 8.682 10.178 55.088 1.567 4.121 0.309 N7 BGM 11 BGM C5 C5 C 0 1 Y N N 9.561 9.109 54.981 1.288 3.811 -0.989 C5 BGM 12 BGM C4 C4 C 0 1 Y N N 10.863 9.534 54.910 1.433 2.468 -1.242 C4 BGM 13 BGM N3 N3 N 0 1 N N N 11.976 8.784 54.817 1.247 1.795 -2.398 N3 BGM 14 BGM C2 C2 C 0 1 N N N 11.714 7.492 54.786 0.875 2.572 -3.392 C2 BGM 15 BGM N2 N2 N 0 1 N N N 12.732 6.642 54.717 0.635 2.081 -4.649 N2 BGM 16 BGM N1 N1 N 0 1 N N N 10.453 6.956 54.851 0.695 3.968 -3.243 N1 BGM 17 BGM C6 C6 C 0 1 N N N 9.304 7.724 54.955 0.883 4.686 -2.054 C6 BGM 18 BGM O6 O6 O 0 1 N N N 8.187 7.153 55.010 0.727 5.893 -1.922 O6 BGM 19 BGM "C2'" C2* C 0 1 N N N 12.016 12.862 53.945 0.878 -0.312 0.578 "C2'" BGM 20 BGM "C3'" C3* C 0 1 N N S 12.962 13.861 54.630 1.309 -1.697 0.152 "C3'" BGM 21 BGM "O3'" O3* O 0 1 N N N 14.348 13.554 54.447 2.127 -2.250 1.180 "O3'" BGM 22 BGM OP3 O3P O 0 1 N Y N ? ? ? 1.788 -3.490 -4.532 OP3 BGM 23 BGM BR BR BR 0 0 N N N ? ? ? 2.374 2.788 2.685 BR BGM 24 BGM HOP2 2HOP H 0 0 N N N 10.153 17.216 56.431 -0.064 -1.754 -6.033 HOP2 BGM 25 BGM "H5'" 1H5* H 0 1 N N N 11.126 14.402 57.603 0.551 -0.756 -2.359 "H5'" BGM 26 BGM "H5''" 2H5* H 0 0 N N N 10.804 15.002 56.082 0.917 -2.495 -2.497 "H5''" BGM 27 BGM "H4'" H4* H 0 1 N N N 13.555 13.860 56.675 3.008 -2.117 -1.157 "H4'" BGM 28 BGM "H1'" H1* H 0 1 N N N 12.860 11.076 54.746 2.853 0.503 1.007 "H1'" BGM 29 BGM H21 1H2 H 0 1 N N N 12.529 5.642 54.693 0.993 2.585 -5.428 H21 BGM 30 BGM H22 2H2 H 0 1 N N N 13.375 6.831 55.485 0.113 1.240 -4.735 H22 BGM 31 BGM H1 H1 H 0 1 N N N 10.365 5.940 54.820 0.406 4.493 -4.064 H1 BGM 32 BGM "H2'" 1H2* H 0 1 N N N 12.300 12.560 52.909 0.008 0.008 -0.009 "H2'" BGM 33 BGM "H2''" 2H2* H 0 0 N N N 11.017 13.265 53.654 0.635 -0.225 1.641 "H2''" BGM 34 BGM "H3'" H3* H 0 1 N N N 12.833 14.885 54.208 0.475 -2.383 -0.018 "H3'" BGM 35 BGM "HO3'" H3T H 0 0 N Y N 14.569 13.642 53.527 2.928 -1.706 1.218 "HO3'" BGM 36 BGM HOP3 3HOP H 0 0 N N N -0.707 -0.561 -0.294 1.686 -4.141 -5.258 HOP3 BGM 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BGM P OP1 DOUB N N 1 BGM P OP2 SING N N 2 BGM P "O5'" SING N N 3 BGM P OP3 SING N N 4 BGM OP2 HOP2 SING N N 5 BGM "O5'" "C5'" SING N N 6 BGM "C5'" "C4'" SING N N 7 BGM "C5'" "H5'" SING N N 8 BGM "C5'" "H5''" SING N N 9 BGM "C4'" "O4'" SING N N 10 BGM "C4'" "C3'" SING N N 11 BGM "C4'" "H4'" SING N N 12 BGM "O4'" "C1'" SING N N 13 BGM "C1'" N9 SING N N 14 BGM "C1'" "C2'" SING N N 15 BGM "C1'" "H1'" SING N N 16 BGM N9 C8 SING Y N 17 BGM N9 C4 SING Y N 18 BGM C8 N7 DOUB Y N 19 BGM C8 BR SING N N 20 BGM N7 C5 SING Y N 21 BGM C5 C4 DOUB Y N 22 BGM C5 C6 SING N N 23 BGM C4 N3 SING N N 24 BGM N3 C2 DOUB N N 25 BGM C2 N2 SING N N 26 BGM C2 N1 SING N N 27 BGM N2 H21 SING N N 28 BGM N2 H22 SING N N 29 BGM N1 C6 SING N N 30 BGM N1 H1 SING N N 31 BGM C6 O6 DOUB N N 32 BGM "C2'" "C3'" SING N N 33 BGM "C2'" "H2'" SING N N 34 BGM "C2'" "H2''" SING N N 35 BGM "C3'" "O3'" SING N N 36 BGM "C3'" "H3'" SING N N 37 BGM "O3'" "HO3'" SING N N 38 BGM OP3 HOP3 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BGM SMILES ACDLabs 10.04 "O=C1c2nc(Br)n(c2N=C(N)N1)C3OC(C(O)C3)COP(=O)(O)O" BGM SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c(Br)nc2C(=O)N1" BGM SMILES CACTVS 3.341 "NC1=Nc2n([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c(Br)nc2C(=O)N1" BGM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1n2c3c(nc2Br)C(=O)NC(=N3)N)COP(=O)(O)O)O" BGM SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1n2c3c(nc2Br)C(=O)NC(=N3)N)COP(=O)(O)O)O" BGM InChI InChI 1.03 "InChI=1S/C10H13BrN5O7P/c11-9-13-6-7(14-10(12)15-8(6)18)16(9)5-1-3(17)4(23-5)2-22-24(19,20)21/h3-5,17H,1-2H2,(H2,19,20,21)(H3,12,14,15,18)/t3-,4+,5+/m0/s1" BGM InChIKey InChI 1.03 KUFMHNJQBUZBPA-VPENINKCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGM "SYSTEMATIC NAME" ACDLabs 10.04 ;8-bromo-2'-deoxyguanosine 5'-(dihydrogen phosphate) ; BGM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2-amino-8-bromo-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BGM "Create component" 2002-11-21 RCSB BGM "Modify descriptor" 2011-06-04 RCSB #