data_BIG # _chem_comp.id BIG _chem_comp.name "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "butylthio-DADMe-Immucillin A" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-07-10 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 335.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BIG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3DP9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BIG C2 C2 C 0 1 Y N N -1.321 -4.128 5.295 4.595 -2.135 1.293 C2 BIG 1 BIG C5 C5 C 0 1 Y N N -3.934 -3.464 4.593 4.847 -0.123 -0.471 C5 BIG 2 BIG C4 C4 C 0 1 Y N N -3.235 -2.914 5.756 3.603 -0.736 -0.240 C4 BIG 3 BIG C8 C8 C 0 1 Y N N -5.326 -2.046 5.613 3.338 0.887 -1.785 C8 BIG 4 BIG "O3'" "O3'" O 0 1 N N N -1.263 2.082 8.214 -0.350 2.625 1.856 "O3'" BIG 5 BIG "C3'" "C3'" C 0 1 N N R -1.219 1.114 7.158 -0.825 2.181 0.584 "C3'" BIG 6 BIG "C4'" "C4'" C 0 1 N N S -2.117 1.510 5.992 -1.686 0.912 0.747 "C4'" BIG 7 BIG "C5'" "C5'" C 0 1 N N N -1.644 0.896 4.676 -3.087 1.143 0.177 "C5'" BIG 8 BIG "S5'" "S5'" S 0 1 N N N -0.393 1.862 3.883 -4.123 -0.308 0.512 "S5'" BIG 9 BIG C20 C20 C 0 1 N N N -1.338 3.108 3.054 -5.716 0.149 -0.226 C20 BIG 10 BIG C21 C21 C 0 1 N N N -0.402 4.151 2.453 -6.717 -0.990 -0.025 C21 BIG 11 BIG C22 C22 C 0 1 N N N -1.135 5.457 2.161 -8.061 -0.605 -0.648 C22 BIG 12 BIG C23 C23 C 0 1 N N N -0.977 5.826 0.704 -9.061 -1.744 -0.446 C23 BIG 13 BIG "C1'" "C1'" C 0 1 N N N -3.459 0.879 6.322 -0.951 -0.178 -0.063 "C1'" BIG 14 BIG "N1'" "N1'" N 0 1 N N N -3.255 0.114 7.571 0.460 0.283 -0.116 "N1'" BIG 15 BIG "C2'" "C2'" C 0 1 N N N -1.825 -0.155 7.709 0.357 1.752 -0.311 "C2'" BIG 16 BIG C10 C10 C 0 1 N N N -3.975 -1.176 7.647 1.178 -0.347 -1.232 C10 BIG 17 BIG N7 N7 N 0 1 Y N N -5.158 -2.903 4.555 4.651 0.858 -1.416 N7 BIG 18 BIG C6 C6 C 0 1 Y N N -3.159 -4.431 3.790 5.955 -0.589 0.245 C6 BIG 19 BIG N6 N6 N 0 1 N N N -3.684 -5.023 2.689 7.206 -0.022 0.060 N6 BIG 20 BIG N3 N3 N 0 1 Y N N -1.962 -3.258 6.082 3.524 -1.733 0.646 N3 BIG 21 BIG C9 C9 C 0 1 Y N N -4.176 -1.981 6.396 2.651 -0.054 -1.111 C9 BIG 22 BIG N1 N1 N 0 1 Y N N -1.892 -4.695 4.204 5.782 -1.586 1.107 N1 BIG 23 BIG H2 H2 H 0 1 N N N -0.302 -4.391 5.539 4.500 -2.940 2.007 H2 BIG 24 BIG H8 H8 H 0 1 N N N -6.232 -1.494 5.813 2.913 1.564 -2.512 H8 BIG 25 BIG "HO3'" "HO3'" H 0 0 N N N -1.273 1.636 9.053 0.198 3.421 1.815 "HO3'" BIG 26 BIG "H3'" "H3'" H 0 1 N N N -0.178 1.017 6.815 -1.401 2.970 0.099 "H3'" BIG 27 BIG "H4'" "H4'" H 0 1 N N N -2.133 2.603 5.870 -1.747 0.628 1.797 "H4'" BIG 28 BIG "H5'" "H5'" H 0 1 N N N -1.231 -0.102 4.887 -3.530 2.022 0.646 "H5'" BIG 29 BIG "H5'A" "H5'A" H 0 0 N N N -2.510 0.850 3.999 -3.020 1.301 -0.900 "H5'A" BIG 30 BIG H20 H20 H 0 1 N N N -1.930 2.643 2.252 -6.093 1.053 0.253 H20 BIG 31 BIG H20A H20A H 0 0 N N N -2.010 3.595 3.776 -5.583 0.332 -1.293 H20A BIG 32 BIG H21 H21 H 0 1 N N N 0.410 4.352 3.167 -6.340 -1.894 -0.504 H21 BIG 33 BIG H21A H21A H 0 0 N N N -0.006 3.756 1.506 -6.850 -1.173 1.041 H21A BIG 34 BIG H22 H22 H 0 1 N N N -2.204 5.333 2.390 -8.437 0.299 -0.168 H22 BIG 35 BIG H22A H22A H 0 0 N N N -0.708 6.257 2.784 -7.928 -0.422 -1.714 H22A BIG 36 BIG H23 H23 H 0 1 N N N -0.939 6.921 0.605 -10.019 -1.470 -0.890 H23 BIG 37 BIG H23A H23A H 0 0 N N N -0.045 5.390 0.314 -8.685 -2.648 -0.926 H23A BIG 38 BIG H23B H23B H 0 0 N N N -1.832 5.436 0.132 -9.194 -1.927 0.620 H23B BIG 39 BIG "H1'" "H1'" H 0 1 N N N -4.227 1.654 6.463 -1.018 -1.140 0.445 "H1'" BIG 40 BIG "H1'A" "H1'A" H 0 0 N N N -3.808 0.229 5.506 -1.366 -0.249 -1.069 "H1'A" BIG 41 BIG "H2'" "H2'" H 0 1 N N N -1.514 -1.044 7.141 0.148 1.983 -1.355 "H2'" BIG 42 BIG "H2'A" "H2'A" H 0 0 N N N -1.514 -0.383 8.739 1.276 2.243 0.011 "H2'A" BIG 43 BIG H10 H10 H 0 1 N N N -3.398 -1.812 8.334 1.019 -1.425 -1.204 H10 BIG 44 BIG H10A H10A H 0 0 N N N -4.995 -0.894 7.949 0.805 0.051 -2.175 H10A BIG 45 BIG HN7 HN7 H 0 1 N N N -5.847 -3.086 3.854 5.342 1.442 -1.765 HN7 BIG 46 BIG HN6 HN6 H 0 1 N N N -3.813 -4.339 1.972 7.321 0.705 -0.572 HN6 BIG 47 BIG HN6A HN6A H 0 0 N N N -3.060 -5.733 2.363 7.968 -0.354 0.561 HN6A BIG 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BIG C2 N3 DOUB Y N 1 BIG C2 N1 SING Y N 2 BIG C5 C4 DOUB Y N 3 BIG C5 N7 SING Y N 4 BIG C5 C6 SING Y N 5 BIG C4 N3 SING Y N 6 BIG C4 C9 SING Y N 7 BIG C8 N7 SING Y N 8 BIG C8 C9 DOUB Y N 9 BIG "O3'" "C3'" SING N N 10 BIG "C3'" "C4'" SING N N 11 BIG "C3'" "C2'" SING N N 12 BIG "C4'" "C5'" SING N N 13 BIG "C4'" "C1'" SING N N 14 BIG "C5'" "S5'" SING N N 15 BIG "S5'" C20 SING N N 16 BIG C20 C21 SING N N 17 BIG C21 C22 SING N N 18 BIG C22 C23 SING N N 19 BIG "C1'" "N1'" SING N N 20 BIG "N1'" "C2'" SING N N 21 BIG "N1'" C10 SING N N 22 BIG C10 C9 SING N N 23 BIG C6 N6 SING N N 24 BIG C6 N1 DOUB Y N 25 BIG C2 H2 SING N N 26 BIG C8 H8 SING N N 27 BIG "O3'" "HO3'" SING N N 28 BIG "C3'" "H3'" SING N N 29 BIG "C4'" "H4'" SING N N 30 BIG "C5'" "H5'" SING N N 31 BIG "C5'" "H5'A" SING N N 32 BIG C20 H20 SING N N 33 BIG C20 H20A SING N N 34 BIG C21 H21 SING N N 35 BIG C21 H21A SING N N 36 BIG C22 H22 SING N N 37 BIG C22 H22A SING N N 38 BIG C23 H23 SING N N 39 BIG C23 H23A SING N N 40 BIG C23 H23B SING N N 41 BIG "C1'" "H1'" SING N N 42 BIG "C1'" "H1'A" SING N N 43 BIG "C2'" "H2'" SING N N 44 BIG "C2'" "H2'A" SING N N 45 BIG C10 H10 SING N N 46 BIG C10 H10A SING N N 47 BIG N7 HN7 SING N N 48 BIG N6 HN6 SING N N 49 BIG N6 HN6A SING N N 50 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BIG SMILES ACDLabs 10.04 "S(CCCC)CC3CN(Cc2cnc1c2ncnc1N)CC3O" BIG SMILES_CANONICAL CACTVS 3.341 "CCCCSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c(N)ncnc23" BIG SMILES CACTVS 3.341 "CCCCSC[CH]1CN(C[CH]1O)Cc2c[nH]c3c(N)ncnc23" BIG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCSC[C@H]1C[N@](C[C@@H]1O)Cc2c[nH]c3c2ncnc3N" BIG SMILES "OpenEye OEToolkits" 1.5.0 "CCCCSCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N" BIG InChI InChI 1.03 "InChI=1S/C16H25N5OS/c1-2-3-4-23-9-12-7-21(8-13(12)22)6-11-5-18-15-14(11)19-10-20-16(15)17/h5,10,12-13,18,22H,2-4,6-9H2,1H3,(H2,17,19,20)/t12-,13+/m1/s1" BIG InChIKey InChI 1.03 LTSUEVPGSXUJHT-OLZOCXBDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BIG "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol" BIG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1S,3R,4S)-1-[(4-amino-5H-pyrrolo[5,4-e]pyrimidin-7-yl)methyl]-4-(butylsulfanylmethyl)pyrrolidin-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BIG "Create component" 2008-07-10 RCSB BIG "Modify aromatic_flag" 2011-06-04 RCSB BIG "Modify descriptor" 2011-06-04 RCSB BIG "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BIG _pdbx_chem_comp_synonyms.name "butylthio-DADMe-Immucillin A" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##