data_BJ9 # _chem_comp.id BJ9 _chem_comp.name "1-{(2R,3R,4S,5R)-5-[(S)-{[(2S,3S,4S)-2-amino-5-(carbamoyloxy)-3,4-dihydroxypentanoyl]amino}(carboxy)methyl]-3,4-dihydroxyoxolan-2-yl}-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H23 N5 O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Polyoxin d" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-15 _chem_comp.pdbx_modified_date 2022-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.390 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BJ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7STO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BJ9 C10 C1 C 0 1 N N R 129.446 97.559 91.891 3.480 -2.109 0.170 C10 BJ9 1 BJ9 C15 C2 C 0 1 N N N 127.873 97.068 96.090 0.174 -1.996 1.452 C15 BJ9 2 BJ9 C21 C3 C 0 1 N N S 132.029 95.594 97.011 -3.568 -1.582 -1.023 C21 BJ9 3 BJ9 C22 C4 C 0 1 N N S 131.966 96.031 98.479 -3.901 -0.308 -0.244 C22 BJ9 4 BJ9 C24 C5 C 0 1 N N N 132.093 93.739 99.529 -5.555 1.547 0.012 C24 BJ9 5 BJ9 C26 C6 C 0 1 N N N 130.715 92.735 101.186 -7.147 3.325 0.010 C26 BJ9 6 BJ9 C01 C7 C 0 1 N N N 127.321 99.587 92.313 4.506 1.034 -0.903 C01 BJ9 7 BJ9 C02 C8 C 0 1 N N N 126.479 100.733 91.979 4.978 2.230 -0.396 C02 BJ9 8 BJ9 C03 C9 C 0 1 N N N 125.608 100.684 90.806 4.439 2.696 0.893 C03 BJ9 9 BJ9 C06 C10 C 0 1 N N N 126.423 98.280 90.237 3.097 0.783 0.968 C06 BJ9 10 BJ9 C09 C11 C 0 1 N N R 128.175 97.253 91.836 3.071 -0.928 -0.746 C09 BJ9 11 BJ9 C11 C12 C 0 1 N N S 130.002 96.597 92.921 2.398 -3.166 -0.160 C11 BJ9 12 BJ9 C12 C13 C 0 1 N N R 128.852 96.421 93.937 1.240 -2.345 -0.759 C12 BJ9 13 BJ9 C14 C14 C 0 1 N N S 129.002 97.350 95.135 -0.030 -2.555 0.068 C14 BJ9 14 BJ9 C19 C15 C 0 1 N N N 130.691 95.802 96.361 -2.414 -2.289 -0.360 C19 BJ9 15 BJ9 C23 C16 C 0 1 N N S 132.824 95.066 99.342 -5.150 0.343 -0.841 C23 BJ9 16 BJ9 C34 C17 C 0 1 N N N 126.502 101.977 92.860 5.988 3.013 -1.120 C34 BJ9 17 BJ9 N05 N1 N 0 1 N N N 125.570 99.514 89.957 3.514 1.937 1.517 N05 BJ9 18 BJ9 N08 N2 N 0 1 N N N 127.323 98.391 91.482 3.570 0.340 -0.207 N08 BJ9 19 BJ9 N18 N3 N 0 1 N N N 130.331 97.138 95.794 -1.152 -1.868 -0.576 N18 BJ9 20 BJ9 N28 N4 N 0 1 N N N 130.843 91.705 102.199 -8.178 4.010 -0.523 N28 BJ9 21 BJ9 N31 N5 N 0 1 N N N 133.040 96.400 96.301 -4.741 -2.467 -1.038 N31 BJ9 22 BJ9 O04 O1 O 0 1 N N N 124.942 101.599 90.558 4.820 3.742 1.384 O04 BJ9 23 BJ9 O07 O2 O 0 1 N N N 126.397 97.327 89.553 2.266 0.119 1.556 O07 BJ9 24 BJ9 O13 O3 O 0 1 N N N 127.773 96.737 93.307 1.628 -0.962 -0.715 O13 BJ9 25 BJ9 O16 O4 O 0 1 N N N 126.677 97.418 95.779 -0.544 -1.113 1.859 O16 BJ9 26 BJ9 O17 O5 O 0 1 N N N 128.085 96.499 97.171 1.153 -2.477 2.233 O17 BJ9 27 BJ9 O20 O6 O 0 1 N N N 129.906 94.892 96.300 -2.621 -3.237 0.368 O20 BJ9 28 BJ9 O25 O7 O 0 1 N N N 131.787 93.591 100.917 -6.667 2.235 -0.619 O25 BJ9 29 BJ9 O27 O8 O 0 1 N N N 129.708 92.846 100.593 -6.651 3.690 1.057 O27 BJ9 30 BJ9 O29 O9 O 0 1 N N N 133.048 95.634 100.583 -6.218 -0.605 -0.864 O29 BJ9 31 BJ9 O30 O10 O 0 1 N N N 132.459 97.308 98.587 -4.144 -0.637 1.126 O30 BJ9 32 BJ9 O32 O11 O 0 1 N N N 130.280 95.431 92.337 2.891 -4.106 -1.115 O32 BJ9 33 BJ9 O33 O12 O 0 1 N N N 130.136 97.327 90.576 4.782 -2.591 -0.169 O33 BJ9 34 BJ9 O35 O13 O 0 1 N N N 127.581 102.420 93.273 6.434 4.177 -0.608 O35 BJ9 35 BJ9 O36 O14 O 0 1 N N N 125.420 102.561 93.162 6.421 2.611 -2.183 O36 BJ9 36 BJ9 H101 H1 H 0 0 N N N 129.620 98.593 92.223 3.435 -1.821 1.220 H101 BJ9 37 BJ9 H211 H2 H 0 0 N N N 132.299 94.529 96.964 -3.296 -1.322 -2.046 H211 BJ9 38 BJ9 H221 H3 H 0 0 N N N 130.922 95.977 98.823 -3.063 0.386 -0.307 H221 BJ9 39 BJ9 H241 H4 H 0 0 N N N 131.164 93.739 98.941 -5.854 1.205 1.003 H241 BJ9 40 BJ9 H242 H5 H 0 0 N N N 132.736 92.910 99.199 -4.710 2.229 0.103 H242 BJ9 41 BJ9 H011 H6 H 0 0 N N N 127.951 99.627 93.189 4.876 0.658 -1.845 H011 BJ9 42 BJ9 H091 H7 H 0 0 N N N 127.987 96.427 91.134 3.437 -1.085 -1.761 H091 BJ9 43 BJ9 H111 H8 H 0 0 N N N 130.873 97.044 93.422 2.074 -3.676 0.747 H111 BJ9 44 BJ9 H121 H9 H 0 0 N N N 128.848 95.379 94.289 1.064 -2.650 -1.791 H121 BJ9 45 BJ9 H141 H10 H 0 0 N N N 128.931 98.392 94.789 -0.247 -3.621 0.135 H141 BJ9 46 BJ9 H231 H11 H 0 0 N N N 133.773 94.879 98.819 -4.936 0.674 -1.858 H231 BJ9 47 BJ9 H051 H12 H 0 0 N N N 124.965 99.514 89.161 3.149 2.225 2.368 H051 BJ9 48 BJ9 H181 H13 H 0 0 N N N 130.981 97.895 95.855 -0.987 -1.110 -1.158 H181 BJ9 49 BJ9 H281 H14 H 0 0 N N N 130.075 91.093 102.390 -8.575 3.718 -1.359 H281 BJ9 50 BJ9 H282 H15 H 0 0 N N N 131.699 91.607 102.707 -8.524 4.795 -0.070 H282 BJ9 51 BJ9 H311 H16 H 0 0 N N N 133.934 96.266 96.729 -4.568 -3.287 -1.600 H311 BJ9 52 BJ9 H1 H17 H 0 1 N N N 133.082 96.114 95.344 -5.013 -2.723 -0.100 H1 BJ9 53 BJ9 H2 H19 H 0 1 N N N 127.267 96.400 97.643 1.245 -2.087 3.113 H2 BJ9 54 BJ9 H291 H20 H 0 0 N N N 133.573 95.044 101.112 -6.462 -0.944 0.008 H291 BJ9 55 BJ9 H301 H21 H 0 0 N N N 132.423 97.586 99.495 -4.879 -1.252 1.258 H301 BJ9 56 BJ9 H321 H22 H 0 0 N N N 130.629 94.828 92.983 3.659 -4.610 -0.811 H321 BJ9 57 BJ9 H331 H23 H 0 0 N N N 131.054 97.559 90.654 5.046 -3.385 0.316 H331 BJ9 58 BJ9 H3 H24 H 0 1 N N N 127.425 103.196 93.798 7.098 4.657 -1.121 H3 BJ9 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BJ9 O07 C06 DOUB N N 1 BJ9 N05 C06 SING N N 2 BJ9 N05 C03 SING N N 3 BJ9 C06 N08 SING N N 4 BJ9 O04 C03 DOUB N N 5 BJ9 O33 C10 SING N N 6 BJ9 C03 C02 SING N N 7 BJ9 N08 C09 SING N N 8 BJ9 N08 C01 SING N N 9 BJ9 C09 C10 SING N N 10 BJ9 C09 O13 SING N N 11 BJ9 C10 C11 SING N N 12 BJ9 C02 C01 DOUB N N 13 BJ9 C02 C34 SING N N 14 BJ9 O32 C11 SING N N 15 BJ9 C34 O36 DOUB N N 16 BJ9 C34 O35 SING N N 17 BJ9 C11 C12 SING N N 18 BJ9 O13 C12 SING N N 19 BJ9 C12 C14 SING N N 20 BJ9 C14 N18 SING N N 21 BJ9 C14 C15 SING N N 22 BJ9 O16 C15 DOUB N N 23 BJ9 N18 C19 SING N N 24 BJ9 C15 O17 SING N N 25 BJ9 O20 C19 DOUB N N 26 BJ9 N31 C21 SING N N 27 BJ9 C19 C21 SING N N 28 BJ9 C21 C22 SING N N 29 BJ9 C22 O30 SING N N 30 BJ9 C22 C23 SING N N 31 BJ9 C23 C24 SING N N 32 BJ9 C23 O29 SING N N 33 BJ9 C24 O25 SING N N 34 BJ9 O27 C26 DOUB N N 35 BJ9 O25 C26 SING N N 36 BJ9 C26 N28 SING N N 37 BJ9 C10 H101 SING N N 38 BJ9 C21 H211 SING N N 39 BJ9 C22 H221 SING N N 40 BJ9 C24 H241 SING N N 41 BJ9 C24 H242 SING N N 42 BJ9 C01 H011 SING N N 43 BJ9 C09 H091 SING N N 44 BJ9 C11 H111 SING N N 45 BJ9 C12 H121 SING N N 46 BJ9 C14 H141 SING N N 47 BJ9 C23 H231 SING N N 48 BJ9 N05 H051 SING N N 49 BJ9 N18 H181 SING N N 50 BJ9 N28 H281 SING N N 51 BJ9 N28 H282 SING N N 52 BJ9 N31 H311 SING N N 53 BJ9 N31 H1 SING N N 54 BJ9 O17 H2 SING N N 55 BJ9 O29 H291 SING N N 56 BJ9 O30 H301 SING N N 57 BJ9 O32 H321 SING N N 58 BJ9 O33 H331 SING N N 59 BJ9 O35 H3 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BJ9 SMILES ACDLabs 12.01 "NC(=O)OCC(O)C(O)C(N)C(=O)NC(C1OC(N2C=C(C(=O)NC2=O)C(=O)O)C(O)C1O)C(=O)O" BJ9 InChI InChI 1.03 "InChI=1S/C17H23N5O14/c18-5(7(24)4(23)2-35-16(19)33)12(28)20-6(15(31)32)10-8(25)9(26)13(36-10)22-1-3(14(29)30)11(27)21-17(22)34/h1,4-10,13,23-26H,2,18H2,(H2,19,33)(H,20,28)(H,29,30)(H,31,32)(H,21,27,34)/t4-,5-,6-,7+,8-,9+,10+,13+/m0/s1" BJ9 InChIKey InChI 1.03 JPFWJDMDPLEUBD-ITJAGOAWSA-N BJ9 SMILES_CANONICAL CACTVS 3.385 "N[C@@H]([C@H](O)[C@@H](O)COC(N)=O)C(=O)N[C@@H]([C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=C(C(O)=O)C(=O)NC2=O)C(O)=O" BJ9 SMILES CACTVS 3.385 "N[CH]([CH](O)[CH](O)COC(N)=O)C(=O)N[CH]([CH]1O[CH]([CH](O)[CH]1O)N2C=C(C(O)=O)C(=O)NC2=O)C(O)=O" BJ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)[C@@H](C(=O)O)NC(=O)[C@H]([C@@H]([C@H](COC(=O)N)O)O)N)O)O)C(=O)O" BJ9 SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1C2C(C(C(O2)C(C(=O)O)NC(=O)C(C(C(COC(=O)N)O)O)N)O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BJ9 "SYSTEMATIC NAME" ACDLabs 12.01 "1-{(2R,3R,4S,5R)-5-[(S)-{[(2S,3S,4S)-2-amino-5-(carbamoyloxy)-3,4-dihydroxypentanoyl]amino}(carboxy)methyl]-3,4-dihydroxyoxolan-2-yl}-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid (non-preferred name)" BJ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(2~{R},3~{R},4~{S},5~{R})-5-[(1~{S})-1-[[(2~{S},3~{S},4~{S})-5-aminocarbonyloxy-2-azanyl-3,4-bis(oxidanyl)pentanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-2,4-bis(oxidanylidene)pyrimidine-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BJ9 "Create component" 2021-11-15 RCSB BJ9 "Initial release" 2022-07-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BJ9 _pdbx_chem_comp_synonyms.name "Polyoxin d" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #