data_BKB # _chem_comp.id BKB _chem_comp.name "5-{4-[3-chloro-5-(trifluoromethyl)phenyl]piperazine-1-sulfonyl}-N-[5-(hydroxyamino)-5-oxopentyl]-2,3-dihydro-1H-indole-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 Cl F3 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-17 _chem_comp.pdbx_modified_date 2023-04-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 604.041 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BKB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SS6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BKB C13 C1 C 0 1 Y N N 35.550 11.448 2.463 -1.154 -1.925 0.766 C13 BKB 1 BKB C15 C2 C 0 1 Y N N 33.532 10.324 1.815 -2.976 -1.237 -0.647 C15 BKB 2 BKB C17 C3 C 0 1 Y N N 35.611 9.556 0.886 -0.863 -1.857 -1.608 C17 BKB 3 BKB C21 C4 C 0 1 N N N 31.035 10.813 2.277 -5.253 -0.533 -0.146 C21 BKB 4 BKB C24 C5 C 0 1 N N N 28.570 11.201 2.638 -7.528 0.199 0.334 C24 BKB 5 BKB C26 C6 C 0 1 N N N 27.182 13.261 2.042 -9.891 0.983 0.540 C26 BKB 6 BKB C28 C7 C 0 1 N N N 27.827 15.654 1.603 -12.237 1.762 0.732 C28 BKB 7 BKB C01 C8 C 0 1 Y N N 39.385 7.868 7.298 6.571 0.162 1.640 C01 BKB 8 BKB C02 C9 C 0 1 Y N N 39.120 7.271 6.094 5.896 0.573 0.498 C02 BKB 9 BKB C04 C10 C 0 1 N N N 39.251 7.574 3.598 4.048 -0.539 1.461 C04 BKB 10 BKB C05 C11 C 0 1 N N N 38.320 8.313 2.648 2.534 -0.726 1.320 C05 BKB 11 BKB C07 C12 C 0 1 N N N 38.477 10.261 4.036 2.842 -0.655 -1.185 C07 BKB 12 BKB C08 C13 C 0 1 N N N 39.331 9.526 5.059 4.344 -0.470 -0.945 C08 BKB 13 BKB C12 C14 C 0 1 Y N N 36.221 10.559 1.625 -0.354 -2.107 -0.347 C12 BKB 14 BKB C14 C15 C 0 1 Y N N 34.169 11.341 2.550 -2.457 -1.496 0.622 C14 BKB 15 BKB C16 C16 C 0 1 Y N N 34.224 9.445 0.978 -2.164 -1.416 -1.756 C16 BKB 16 BKB C18 C17 C 0 1 N N N 33.254 8.475 0.307 -2.959 -1.073 -2.996 C18 BKB 17 BKB C19 C18 C 0 1 N N N 31.903 8.796 0.907 -4.339 -0.649 -2.465 C19 BKB 18 BKB C25 C19 C 0 1 N N N 28.377 12.371 1.625 -8.756 0.680 -0.441 C25 BKB 19 BKB C27 C20 C 0 1 N N N 27.020 14.457 1.080 -11.119 1.464 -0.234 C27 BKB 20 BKB C32 C21 C 0 1 Y N N 38.953 5.898 5.953 6.562 1.313 -0.471 C32 BKB 21 BKB C33 C22 C 0 1 Y N N 39.044 5.117 7.082 7.893 1.639 -0.296 C33 BKB 22 BKB C34 C23 C 0 1 Y N N 39.289 5.684 8.316 8.563 1.229 0.842 C34 BKB 23 BKB C35 C24 C 0 1 Y N N 39.452 7.069 8.424 7.903 0.491 1.809 C35 BKB 24 BKB C37 C25 C 0 1 N N N 38.846 3.611 6.925 8.616 2.442 -1.347 C37 BKB 25 BKB F38 F1 F 0 1 N N N 37.638 3.415 6.342 8.061 2.172 -2.602 F38 BKB 26 BKB F39 F2 F 0 1 N N N 38.893 3.040 8.155 8.486 3.806 -1.062 F39 BKB 27 BKB F40 F3 F 0 1 N N N 39.807 3.096 6.128 9.970 2.093 -1.350 F40 BKB 28 BKB N03 N1 N 0 1 N N N 39.034 8.100 4.928 4.550 0.242 0.323 N03 BKB 29 BKB N06 N2 N 0 1 N N N 38.684 9.731 2.704 2.256 -1.306 -0.003 N06 BKB 30 BKB N20 N3 N 0 1 N N N 32.094 10.001 1.706 -4.254 -0.799 -1.010 N20 BKB 31 BKB N23 N4 N 0 1 N N N 29.646 10.381 2.076 -6.441 -0.091 -0.605 N23 BKB 32 BKB N30 N5 N 0 1 N N N 27.286 17.004 1.546 -13.425 2.204 0.273 N30 BKB 33 BKB O10 O1 O 0 1 N N N 38.402 10.230 0.157 1.370 -3.333 1.089 O10 BKB 34 BKB O11 O2 O 0 1 N N N 38.423 12.066 1.724 1.674 -3.262 -1.391 O11 BKB 35 BKB O22 O3 O 0 1 N N N 31.309 11.772 2.910 -5.083 -0.690 1.048 O22 BKB 36 BKB O29 O4 O 0 1 N N N 28.920 15.516 2.066 -12.067 1.606 1.922 O29 BKB 37 BKB O31 O5 O 0 1 N N N 28.134 18.009 2.050 -14.475 2.484 1.180 O31 BKB 38 BKB S09 S1 S 0 1 N N N 38.003 10.678 1.485 1.309 -2.656 -0.158 S09 BKB 39 BKB CL36 CL1 CL 0 0 N N N 39.772 7.822 9.981 8.746 -0.015 3.240 CL36 BKB 40 BKB H1 H1 H 0 1 N N N 36.088 12.196 3.027 -0.759 -2.125 1.751 H1 BKB 41 BKB H2 H2 H 0 1 N N N 36.188 8.887 0.264 -0.238 -1.995 -2.478 H2 BKB 42 BKB H3 H3 H 0 1 N N N 28.857 11.590 3.626 -7.209 0.975 1.029 H3 BKB 43 BKB H4 H4 H 0 1 N N N 27.645 10.613 2.730 -7.779 -0.705 0.889 H4 BKB 44 BKB H5 H5 H 0 1 N N N 27.354 13.639 3.060 -10.142 0.079 1.095 H5 BKB 45 BKB H6 H6 H 0 1 N N N 26.262 12.659 2.025 -9.572 1.760 1.235 H6 BKB 46 BKB H7 H7 H 0 1 N N N 39.538 8.935 7.366 6.055 -0.409 2.397 H7 BKB 47 BKB H8 H8 H 0 1 N N N 39.026 6.497 3.580 4.264 -0.010 2.389 H8 BKB 48 BKB H9 H9 H 0 1 N N N 40.297 7.735 3.298 4.536 -1.514 1.476 H9 BKB 49 BKB H10 H10 H 0 1 N N N 37.275 8.179 2.964 2.174 -1.400 2.097 H10 BKB 50 BKB H11 H11 H 0 1 N N N 38.445 7.931 1.624 2.036 0.239 1.408 H11 BKB 51 BKB H12 H12 H 0 1 N N N 38.746 11.328 4.044 2.373 0.318 -1.337 H12 BKB 52 BKB H13 H13 H 0 1 N N N 37.417 10.148 4.306 2.685 -1.278 -2.065 H13 BKB 53 BKB H14 H14 H 0 1 N N N 40.397 9.708 4.860 4.827 -1.446 -0.897 H14 BKB 54 BKB H15 H15 H 0 1 N N N 39.083 9.871 6.074 4.774 0.108 -1.762 H15 BKB 55 BKB H16 H16 H 0 1 N N N 33.598 12.020 3.166 -3.078 -1.360 1.495 H16 BKB 56 BKB H17 H17 H 0 1 N N N 33.536 7.434 0.524 -2.480 -0.243 -3.516 H17 BKB 57 BKB H18 H18 H 0 1 N N N 31.165 8.978 0.112 -4.550 0.384 -2.744 H18 BKB 58 BKB H19 H19 H 0 1 N N N 28.186 11.955 0.625 -8.505 1.584 -0.996 H19 BKB 59 BKB H20 H20 H 0 1 N N N 29.291 12.982 1.600 -9.075 -0.097 -1.136 H20 BKB 60 BKB H21 H21 H 0 1 N N N 25.957 14.733 1.015 -10.868 2.368 -0.789 H21 BKB 61 BKB H22 H22 H 0 1 N N N 27.388 14.176 0.082 -11.438 0.687 -0.929 H22 BKB 62 BKB H23 H23 H 0 1 N N N 38.758 5.458 4.986 6.040 1.633 -1.360 H23 BKB 63 BKB H24 H24 H 0 1 N N N 39.355 5.060 9.195 9.603 1.485 0.976 H24 BKB 64 BKB H25 H25 H 0 1 N N N 29.439 9.546 1.567 -6.577 0.034 -1.558 H25 BKB 65 BKB H26 H26 H 0 1 N N N 26.379 17.203 1.176 -13.561 2.329 -0.680 H26 BKB 66 BKB H27 H27 H 0 1 N N N 28.944 17.617 2.354 -15.287 2.795 0.758 H27 BKB 67 BKB H28 H28 H 0 1 N N N 33.241 8.632 -0.782 -3.054 -1.934 -3.657 H28 BKB 68 BKB H29 H29 H 0 1 N N N 31.560 7.966 1.543 -5.113 -1.311 -2.853 H29 BKB 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BKB O10 S09 DOUB N N 1 BKB C18 C19 SING N N 2 BKB C18 C16 SING N N 3 BKB C17 C16 DOUB Y N 4 BKB C17 C12 SING Y N 5 BKB C19 N20 SING N N 6 BKB C16 C15 SING Y N 7 BKB C27 C28 SING N N 8 BKB C27 C26 SING N N 9 BKB S09 C12 SING N N 10 BKB S09 O11 DOUB N N 11 BKB S09 N06 SING N N 12 BKB N30 C28 SING N N 13 BKB N30 O31 SING N N 14 BKB C28 O29 DOUB N N 15 BKB C12 C13 DOUB Y N 16 BKB C25 C26 SING N N 17 BKB C25 C24 SING N N 18 BKB N20 C15 SING N N 19 BKB N20 C21 SING N N 20 BKB C15 C14 DOUB Y N 21 BKB N23 C21 SING N N 22 BKB N23 C24 SING N N 23 BKB C21 O22 DOUB N N 24 BKB C13 C14 SING Y N 25 BKB C05 N06 SING N N 26 BKB C05 C04 SING N N 27 BKB N06 C07 SING N N 28 BKB C04 N03 SING N N 29 BKB C07 C08 SING N N 30 BKB N03 C08 SING N N 31 BKB N03 C02 SING N N 32 BKB C32 C02 DOUB Y N 33 BKB C32 C33 SING Y N 34 BKB C02 C01 SING Y N 35 BKB F40 C37 SING N N 36 BKB F38 C37 SING N N 37 BKB C37 C33 SING N N 38 BKB C37 F39 SING N N 39 BKB C33 C34 DOUB Y N 40 BKB C01 C35 DOUB Y N 41 BKB C34 C35 SING Y N 42 BKB C35 CL36 SING N N 43 BKB C13 H1 SING N N 44 BKB C17 H2 SING N N 45 BKB C24 H3 SING N N 46 BKB C24 H4 SING N N 47 BKB C26 H5 SING N N 48 BKB C26 H6 SING N N 49 BKB C01 H7 SING N N 50 BKB C04 H8 SING N N 51 BKB C04 H9 SING N N 52 BKB C05 H10 SING N N 53 BKB C05 H11 SING N N 54 BKB C07 H12 SING N N 55 BKB C07 H13 SING N N 56 BKB C08 H14 SING N N 57 BKB C08 H15 SING N N 58 BKB C14 H16 SING N N 59 BKB C18 H17 SING N N 60 BKB C19 H18 SING N N 61 BKB C25 H19 SING N N 62 BKB C25 H20 SING N N 63 BKB C27 H21 SING N N 64 BKB C27 H22 SING N N 65 BKB C32 H23 SING N N 66 BKB C34 H24 SING N N 67 BKB N23 H25 SING N N 68 BKB N30 H26 SING N N 69 BKB O31 H27 SING N N 70 BKB C18 H28 SING N N 71 BKB C19 H29 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BKB SMILES ACDLabs 12.01 "O=S(=O)(c1cc2CCN(C(=O)NCCCCC(=O)NO)c2cc1)N1CCN(CC1)c1cc(cc(Cl)c1)C(F)(F)F" BKB InChI InChI 1.03 "InChI=1S/C25H29ClF3N5O5S/c26-19-14-18(25(27,28)29)15-20(16-19)32-9-11-33(12-10-32)40(38,39)21-4-5-22-17(13-21)6-8-34(22)24(36)30-7-2-1-3-23(35)31-37/h4-5,13-16,37H,1-3,6-12H2,(H,30,36)(H,31,35)" BKB InChIKey InChI 1.03 KWCPEZUHMIKCPD-UHFFFAOYSA-N BKB SMILES_CANONICAL CACTVS 3.385 "ONC(=O)CCCCNC(=O)N1CCc2cc(ccc12)[S](=O)(=O)N3CCN(CC3)c4cc(Cl)cc(c4)C(F)(F)F" BKB SMILES CACTVS 3.385 "ONC(=O)CCCCNC(=O)N1CCc2cc(ccc12)[S](=O)(=O)N3CCN(CC3)c4cc(Cl)cc(c4)C(F)(F)F" BKB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1S(=O)(=O)N3CCN(CC3)c4cc(cc(c4)Cl)C(F)(F)F)CCN2C(=O)NCCCCC(=O)NO" BKB SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1S(=O)(=O)N3CCN(CC3)c4cc(cc(c4)Cl)C(F)(F)F)CCN2C(=O)NCCCCC(=O)NO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BKB "SYSTEMATIC NAME" ACDLabs 12.01 "5-{4-[3-chloro-5-(trifluoromethyl)phenyl]piperazine-1-sulfonyl}-N-[5-(hydroxyamino)-5-oxopentyl]-2,3-dihydro-1H-indole-1-carboxamide" BKB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[4-[3-chloranyl-5-(trifluoromethyl)phenyl]piperazin-1-yl]sulfonyl-~{N}-[5-(oxidanylamino)-5-oxidanylidene-pentyl]-2,3-dihydroindole-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BKB "Create component" 2021-11-17 RCSB BKB "Initial release" 2023-04-12 RCSB #