data_BKC # _chem_comp.id BKC _chem_comp.name "Bongkrekic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Bongkrek acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-04-17 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.597 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BKC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6GCI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BKC O3 O1 O 0 1 N N N -19.415 24.912 -10.368 4.643 -0.129 1.764 O3 BKC 1 BKC C3 C1 C 0 1 N N N -17.300 29.434 -5.968 -4.263 1.692 0.135 C3 BKC 2 BKC C2 C2 C 0 1 N N S -18.792 29.180 -6.178 -4.281 0.206 -0.227 C2 BKC 3 BKC C1 C3 C 0 1 N N N -19.015 28.096 -7.235 -3.275 -0.057 -1.349 C1 BKC 4 BKC O1 O2 O 0 1 N N N -23.032 25.997 -4.247 11.266 -1.739 -0.981 O1 BKC 5 BKC O2 O3 O 0 1 N N N -21.700 26.963 -5.736 10.186 -0.332 0.360 O2 BKC 6 BKC C4 C4 C 0 1 N N N -16.646 28.399 -5.109 -2.919 2.053 0.712 C4 BKC 7 BKC C5 C5 C 0 1 N N N -15.363 28.113 -5.073 -2.221 3.029 0.187 C5 BKC 8 BKC C6 C6 C 0 1 N N N -14.729 27.067 -4.207 -0.876 3.390 0.763 C6 BKC 9 BKC C7 C7 C 0 1 N N N -14.210 25.865 -5.020 0.182 3.343 -0.341 C7 BKC 10 BKC C8 C8 C 0 1 N N N -15.237 24.783 -5.239 1.526 3.703 0.236 C8 BKC 11 BKC C9 C9 C 0 1 N N N -15.975 24.579 -6.326 2.556 2.876 0.088 C9 BKC 12 BKC C10 C10 C 0 1 N N N -16.925 23.503 -6.467 3.869 3.229 0.651 C10 BKC 13 BKC C11 C11 C 0 1 N N N -17.672 23.224 -7.532 4.921 2.451 0.420 C11 BKC 14 BKC C12 C12 C 0 1 N N N -17.810 23.906 -8.868 4.744 1.135 -0.293 C12 BKC 15 BKC C13 C13 C 0 1 N N R -19.264 24.370 -9.050 5.369 0.015 0.542 C13 BKC 16 BKC C14 C14 C 0 1 N N N -20.267 23.256 -8.814 5.314 -1.277 -0.231 C14 BKC 17 BKC C15 C15 C 0 1 N N N -21.189 23.407 -7.864 6.440 -1.836 -0.678 C15 BKC 18 BKC C16 C16 C 0 1 N N N -21.391 24.563 -7.064 7.736 -1.281 -0.288 C16 BKC 19 BKC C17 C17 C 0 1 N N N -22.278 24.695 -6.072 8.874 -1.779 -0.825 C17 BKC 20 BKC C18 C18 C 0 1 N N N -23.186 23.580 -5.628 8.806 -2.905 -1.823 C18 BKC 21 BKC C19 C19 C 0 1 N N N -22.325 25.977 -5.279 10.131 -1.242 -0.447 C19 BKC 22 BKC C20 C20 C 0 1 N N N -20.160 22.045 -9.697 3.987 -1.939 -0.498 C20 BKC 23 BKC C21 C21 C 0 1 N N N -20.527 25.804 -10.503 5.258 0.511 2.884 C21 BKC 24 BKC C22 C22 C 0 1 N N N -19.481 30.465 -6.528 -5.662 -0.182 -0.688 C22 BKC 25 BKC C23 C23 C 0 1 N N N -19.961 30.806 -7.707 -6.344 -1.124 -0.033 C23 BKC 26 BKC C24 C24 C 0 1 N N N -20.639 32.022 -8.093 -7.685 -1.501 -0.481 C24 BKC 27 BKC C25 C25 C 0 1 N N N -21.041 32.139 -9.383 -8.432 -2.349 0.261 C25 BKC 28 BKC C26 C26 C 0 1 N N N -20.901 31.242 -10.611 -8.043 -2.662 1.588 C26 BKC 29 BKC O4 O4 O 0 1 N N N -21.424 31.627 -11.682 -7.106 -2.079 2.100 O4 BKC 30 BKC O5 O5 O 0 1 N N N -20.229 30.178 -10.504 -8.711 -3.606 2.283 O5 BKC 31 BKC C27 C27 C 0 1 N N N -20.890 33.098 -7.069 -8.233 -0.944 -1.770 C27 BKC 32 BKC C28 C28 C 0 1 N N N -21.791 32.826 -5.885 -8.856 0.404 -1.510 C28 BKC 33 BKC O6 O6 O 0 1 N N N -22.965 32.472 -6.107 -8.855 0.864 -0.393 O6 BKC 34 BKC O7 O7 O 0 1 N N N -21.297 32.991 -4.753 -9.412 1.092 -2.519 O7 BKC 35 BKC H1 H1 H 0 1 N N N -16.804 29.439 -6.950 -4.446 2.287 -0.760 H1 BKC 36 BKC H2 H2 H 0 1 N N N -17.176 30.416 -5.489 -5.041 1.896 0.872 H2 BKC 37 BKC H3 H3 H 0 1 N N N -19.209 28.814 -5.228 -4.011 -0.385 0.649 H3 BKC 38 BKC H4 H4 H 0 1 N N N -18.492 27.176 -6.934 -2.276 0.224 -1.015 H4 BKC 39 BKC H5 H5 H 0 1 N N N -20.092 27.891 -7.329 -3.288 -1.116 -1.607 H5 BKC 40 BKC H6 H6 H 0 1 N N N -18.622 28.441 -8.203 -3.545 0.533 -2.225 H6 BKC 41 BKC H7 H7 H 0 1 N N N -23.019 26.869 -3.870 12.071 -1.309 -0.663 H7 BKC 42 BKC H8 H8 H 0 1 N N N -17.290 27.831 -4.454 -2.530 1.507 1.559 H8 BKC 43 BKC H9 H9 H 0 1 N N N -14.711 28.679 -5.722 -2.609 3.575 -0.660 H9 BKC 44 BKC H10 H10 H 0 1 N N N -13.884 27.520 -3.668 -0.919 4.395 1.183 H10 BKC 45 BKC H11 H11 H 0 1 N N N -15.476 26.708 -3.483 -0.615 2.679 1.548 H11 BKC 46 BKC H12 H12 H 0 1 N N N -13.356 25.427 -4.483 0.224 2.338 -0.761 H12 BKC 47 BKC H13 H13 H 0 1 N N N -13.877 26.230 -6.003 -0.080 4.053 -1.125 H13 BKC 48 BKC H14 H14 H 0 1 N N N -15.391 24.096 -4.420 1.653 4.634 0.769 H14 BKC 49 BKC H15 H15 H 0 1 N N N -15.856 25.261 -7.155 2.429 1.946 -0.445 H15 BKC 50 BKC H16 H16 H 0 1 N N N -17.043 22.852 -5.614 3.977 4.119 1.253 H16 BKC 51 BKC H17 H17 H 0 1 N N N -18.293 22.348 -7.418 5.904 2.763 0.742 H17 BKC 52 BKC H18 H18 H 0 1 N N N -17.545 23.201 -9.670 3.681 0.937 -0.429 H18 BKC 53 BKC H19 H19 H 0 1 N N N -17.138 24.776 -8.908 5.233 1.180 -1.266 H19 BKC 54 BKC H20 H20 H 0 1 N N N -19.457 25.162 -8.312 6.407 0.263 0.762 H20 BKC 55 BKC H21 H21 H 0 1 N N N -21.846 22.569 -7.685 6.395 -2.697 -1.328 H21 BKC 56 BKC H22 H22 H 0 1 N N N -20.768 25.419 -7.278 7.785 -0.474 0.427 H22 BKC 57 BKC H23 H23 H 0 1 N N N -23.821 23.931 -4.801 8.728 -2.494 -2.830 H23 BKC 58 BKC H24 H24 H 0 1 N N N -23.821 23.267 -6.470 9.708 -3.513 -1.748 H24 BKC 59 BKC H25 H25 H 0 1 N N N -22.580 22.727 -5.289 7.933 -3.524 -1.615 H25 BKC 60 BKC H26 H26 H 0 1 N N N -20.940 21.320 -9.422 3.580 -1.571 -1.440 H26 BKC 61 BKC H27 H27 H 0 1 N N N -20.292 22.344 -10.747 4.125 -3.019 -0.560 H27 BKC 62 BKC H28 H28 H 0 1 N N N -19.170 21.584 -9.568 3.295 -1.707 0.312 H28 BKC 63 BKC H29 H29 H 0 1 N N N -20.576 26.176 -11.537 4.700 0.273 3.790 H29 BKC 64 BKC H30 H30 H 0 1 N N N -21.457 25.269 -10.262 6.284 0.157 2.986 H30 BKC 65 BKC H31 H31 H 0 1 N N N -20.402 26.652 -9.814 5.260 1.590 2.731 H31 BKC 66 BKC H32 H32 H 0 1 N N N -19.596 31.185 -5.732 -6.099 0.301 -1.549 H32 BKC 67 BKC H33 H33 H 0 1 N N N -19.830 30.076 -8.492 -5.907 -1.607 0.828 H33 BKC 68 BKC H34 H34 H 0 1 N N N -21.571 33.059 -9.584 -9.326 -2.789 -0.157 H34 BKC 69 BKC H35 H35 H 0 1 N N N -20.193 29.740 -11.346 -8.373 -3.750 3.177 H35 BKC 70 BKC H36 H36 H 0 1 N N N -19.909 33.382 -6.661 -7.424 -0.837 -2.493 H36 BKC 71 BKC H37 H37 H 0 1 N N N -21.325 33.953 -7.608 -8.988 -1.622 -2.167 H37 BKC 72 BKC H38 H38 H 0 1 N N N -21.952 32.806 -4.091 -9.799 1.952 -2.304 H38 BKC 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BKC O4 C26 DOUB N N 1 BKC C26 O5 SING N N 2 BKC C26 C25 SING N N 3 BKC C21 O3 SING N N 4 BKC O3 C13 SING N N 5 BKC C20 C14 SING N N 6 BKC C25 C24 DOUB N Z 7 BKC C13 C12 SING N N 8 BKC C13 C14 SING N N 9 BKC C12 C11 SING N N 10 BKC C14 C15 DOUB N Z 11 BKC C24 C23 SING N N 12 BKC C24 C27 SING N N 13 BKC C15 C16 SING N N 14 BKC C23 C22 DOUB N E 15 BKC C11 C10 DOUB N Z 16 BKC C1 C2 SING N N 17 BKC C27 C28 SING N N 18 BKC C16 C17 DOUB N E 19 BKC C22 C2 SING N N 20 BKC C10 C9 SING N N 21 BKC C9 C8 DOUB N E 22 BKC C2 C3 SING N N 23 BKC O6 C28 DOUB N N 24 BKC C17 C18 SING N N 25 BKC C17 C19 SING N N 26 BKC C3 C4 SING N N 27 BKC C28 O7 SING N N 28 BKC O2 C19 DOUB N N 29 BKC C19 O1 SING N N 30 BKC C8 C7 SING N N 31 BKC C4 C5 DOUB N E 32 BKC C5 C6 SING N N 33 BKC C7 C6 SING N N 34 BKC C3 H1 SING N N 35 BKC C3 H2 SING N N 36 BKC C2 H3 SING N N 37 BKC C1 H4 SING N N 38 BKC C1 H5 SING N N 39 BKC C1 H6 SING N N 40 BKC O1 H7 SING N N 41 BKC C4 H8 SING N N 42 BKC C5 H9 SING N N 43 BKC C6 H10 SING N N 44 BKC C6 H11 SING N N 45 BKC C7 H12 SING N N 46 BKC C7 H13 SING N N 47 BKC C8 H14 SING N N 48 BKC C9 H15 SING N N 49 BKC C10 H16 SING N N 50 BKC C11 H17 SING N N 51 BKC C12 H18 SING N N 52 BKC C12 H19 SING N N 53 BKC C13 H20 SING N N 54 BKC C15 H21 SING N N 55 BKC C16 H22 SING N N 56 BKC C18 H23 SING N N 57 BKC C18 H24 SING N N 58 BKC C18 H25 SING N N 59 BKC C20 H26 SING N N 60 BKC C20 H27 SING N N 61 BKC C20 H28 SING N N 62 BKC C21 H29 SING N N 63 BKC C21 H30 SING N N 64 BKC C21 H31 SING N N 65 BKC C22 H32 SING N N 66 BKC C23 H33 SING N N 67 BKC C25 H34 SING N N 68 BKC O5 H35 SING N N 69 BKC C27 H36 SING N N 70 BKC C27 H37 SING N N 71 BKC O7 H38 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BKC InChI InChI 1.03 "InChI=1S/C28H38O7/c1-21(15-18-24(19-26(29)30)20-27(31)32)13-11-9-7-5-6-8-10-12-14-25(35-4)22(2)16-17-23(3)28(33)34/h6,8-12,15-19,21,25H,5,7,13-14,20H2,1-4H3,(H,29,30)(H,31,32)(H,33,34)/b8-6+,11-9+,12-10-,18-15+,22-16-,23-17+,24-19+/t21-,25+/m0/s1" BKC InChIKey InChI 1.03 SHCXABJSXUACKU-WUTQZGRKSA-N BKC SMILES_CANONICAL CACTVS 3.385 "CO[C@H](C/C=C\C=C\CC/C=C/C[C@H](C)/C=C/C(CC(O)=O)=C\C(O)=O)\C(C)=C/C=C(\C)C(O)=O" BKC SMILES CACTVS 3.385 "CO[CH](CC=CC=CCCC=CC[CH](C)C=CC(CC(O)=O)=CC(O)=O)C(C)=CC=C(C)C(O)=O" BKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H](C/C=C/CC/C=C/C=C\C[C@H](/C(=C\C=C(/C)\C(=O)O)/C)OC)/C=C/C(=C\C(=O)O)/CC(=O)O" BKC SMILES "OpenEye OEToolkits" 2.0.6 "CC(CC=CCCC=CC=CCC(C(=CC=C(C)C(=O)O)C)OC)C=CC(=CC(=O)O)CC(=O)O" # _pdbx_chem_comp_identifier.comp_id BKC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{E},4~{Z},6~{R},8~{Z},10~{E},14~{E},17~{S},18~{E},20~{Z})-20-(2-hydroxy-2-oxoethyl)-6-methoxy-2,5,17-trimethyl-docosa-2,4,8,10,14,18,20-heptaenedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BKC "Create component" 2018-04-17 EBI BKC "Initial release" 2019-01-09 RCSB BKC "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BKC _pdbx_chem_comp_synonyms.name "Bongkrek acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##